assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	1	303207-303292	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA,NA|695aa|down_6|NZ_AP022868.1_311748_313833_+	NA|560aa|up_9|NZ_AP022868.1_290707_292387_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|245aa|up_8|NZ_AP022868.1_292620_293355_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|903aa|up_7|NZ_AP022868.1_293438_296147_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|94aa|up_6|NZ_AP022868.1_296258_296540_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|475aa|up_5|NZ_AP022868.1_296582_298007_+	pfam02646, RmuC, RmuC family	NA|210aa|up_4|NZ_AP022868.1_298003_298633_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|283aa|up_3|NZ_AP022868.1_298726_299575_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|100aa|up_2|NZ_AP022868.1_299741_300041_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_AP022868.1_300044_301586_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_AP022868.1_301611_303111_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|355aa|down_0|NZ_AP022868.1_303406_304471_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NZ_AP022868.1_304481_304796_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|618aa|down_2|NZ_AP022868.1_304969_306823_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NZ_AP022868.1_307041_308655_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NZ_AP022868.1_308860_310930_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NZ_AP022868.1_311237_311627_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NZ_AP022868.1_311748_313833_+	NA	NA|912aa|down_7|NZ_AP022868.1_313944_316680_-	NF000540, alt_ValS, valine--tRNA ligase	NA|509aa|down_8|NZ_AP022868.1_316823_318350_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NZ_AP022868.1_318411_319098_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	2	804900-804973	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	GGTGTCAAAATGACACCCCTGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|142aa|up_7|NZ_AP022868.1_798883_799309_+,NA|168aa|up_6|NZ_AP022868.1_799385_799889_-,NA|326aa|up_3|NZ_AP022868.1_802652_803630_+,NA|157aa|up_2|NZ_AP022868.1_803626_804097_+,NA|73aa|up_1|NZ_AP022868.1_804122_804341_+,NA|54aa|up_0|NZ_AP022868.1_804330_804492_+,NA|139aa|down_1|NZ_AP022868.1_807069_807486_+,NA|162aa|down_2|NZ_AP022868.1_807586_808072_-,NA|133aa|down_3|NZ_AP022868.1_808733_809132_+,NA|96aa|down_4|NZ_AP022868.1_809128_809416_+,NA|179aa|down_5|NZ_AP022868.1_809412_809949_+,NA|62aa|down_6|NZ_AP022868.1_809945_810131_+,NA|163aa|down_7|NZ_AP022868.1_810127_810616_+,NA|184aa|down_9|NZ_AP022868.1_811604_812156_-	NA|481aa|up_9|NZ_AP022868.1_794170_795613_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|200aa|up_8|NZ_AP022868.1_797237_797837_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|142aa|up_7|NZ_AP022868.1_798883_799309_+	NA	NA|168aa|up_6|NZ_AP022868.1_799385_799889_-	NA	NA|408aa|up_5|NZ_AP022868.1_800209_801433_+	pfam13412, HTH_24, Winged helix-turn-helix DNA-binding	NA|389aa|up_4|NZ_AP022868.1_801483_802650_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|326aa|up_3|NZ_AP022868.1_802652_803630_+	NA	NA|157aa|up_2|NZ_AP022868.1_803626_804097_+	NA	NA|73aa|up_1|NZ_AP022868.1_804122_804341_+	NA	NA|54aa|up_0|NZ_AP022868.1_804330_804492_+	NA	NA|272aa|down_0|NZ_AP022868.1_806034_806850_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_1|NZ_AP022868.1_807069_807486_+	NA	NA|162aa|down_2|NZ_AP022868.1_807586_808072_-	NA	NA|133aa|down_3|NZ_AP022868.1_808733_809132_+	NA	NA|96aa|down_4|NZ_AP022868.1_809128_809416_+	NA	NA|179aa|down_5|NZ_AP022868.1_809412_809949_+	NA	NA|62aa|down_6|NZ_AP022868.1_809945_810131_+	NA	NA|163aa|down_7|NZ_AP022868.1_810127_810616_+	NA	NA|322aa|down_8|NZ_AP022868.1_810637_811603_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|184aa|down_9|NZ_AP022868.1_811604_812156_-	NA
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	3	872069-872182	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	CTTCTCGAACACGTTGCCCTTCCCGTCGCCGCCGGACAGCCA	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|82aa|up_9|NZ_AP022868.1_862320_862566_-,NA|104aa|up_7|NZ_AP022868.1_865860_866172_+,NA|187aa|up_6|NZ_AP022868.1_866185_866746_-,NA|106aa|up_5|NZ_AP022868.1_867115_867433_-,NA|55aa|up_4|NZ_AP022868.1_867419_867584_-,NA|266aa|up_3|NZ_AP022868.1_867730_868528_-,NA|113aa|up_0|NZ_AP022868.1_871615_871954_-,NA|124aa|down_1|NZ_AP022868.1_874647_875019_-,NA|73aa|down_2|NZ_AP022868.1_875103_875322_-,NA|99aa|down_3|NZ_AP022868.1_875604_875901_+,NA|121aa|down_4|NZ_AP022868.1_876373_876736_-,NA|209aa|down_5|NZ_AP022868.1_876923_877550_-,NA|361aa|down_6|NZ_AP022868.1_877770_878853_+	NA|82aa|up_9|NZ_AP022868.1_862320_862566_-	NA	NA|295aa|up_8|NZ_AP022868.1_864634_865519_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|104aa|up_7|NZ_AP022868.1_865860_866172_+	NA	NA|187aa|up_6|NZ_AP022868.1_866185_866746_-	NA	NA|106aa|up_5|NZ_AP022868.1_867115_867433_-	NA	NA|55aa|up_4|NZ_AP022868.1_867419_867584_-	NA	NA|266aa|up_3|NZ_AP022868.1_867730_868528_-	NA	NA|490aa|up_2|NZ_AP022868.1_868530_870000_-	pfam12666, PrgI, PrgI family protein	NA|479aa|up_1|NZ_AP022868.1_870084_871521_-	PHA03264, PHA03264, envelope glycoprotein D; Provisional	NA|113aa|up_0|NZ_AP022868.1_871615_871954_-	NA	NA|414aa|down_0|NZ_AP022868.1_872929_874171_-	PRK08581, PRK08581, amidase domain-containing protein	NA|124aa|down_1|NZ_AP022868.1_874647_875019_-	NA	NA|73aa|down_2|NZ_AP022868.1_875103_875322_-	NA	NA|99aa|down_3|NZ_AP022868.1_875604_875901_+	NA	NA|121aa|down_4|NZ_AP022868.1_876373_876736_-	NA	NA|209aa|down_5|NZ_AP022868.1_876923_877550_-	NA	NA|361aa|down_6|NZ_AP022868.1_877770_878853_+	NA	NA|455aa|down_7|NZ_AP022868.1_878877_880242_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|262aa|down_8|NZ_AP022868.1_880643_881429_+	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|956aa|down_9|NZ_AP022868.1_881474_884342_+	PRK05755, PRK05755, DNA polymerase I; Provisional
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	4	1457083-1457163	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|107aa|up_5|NZ_AP022868.1_1447445_1447766_-,NA|284aa|down_0|NZ_AP022868.1_1458063_1458915_+	NA|170aa|up_9|NZ_AP022868.1_1443322_1443832_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_AP022868.1_1443871_1444930_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_AP022868.1_1445154_1446111_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_AP022868.1_1446235_1447180_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_AP022868.1_1447445_1447766_-	NA	NA|263aa|up_4|NZ_AP022868.1_1447765_1448554_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_AP022868.1_1448692_1450246_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_AP022868.1_1450367_1451363_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_AP022868.1_1451481_1455159_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|530aa|up_0|NZ_AP022868.1_1455219_1456809_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NZ_AP022868.1_1458063_1458915_+	NA	NA|532aa|down_1|NZ_AP022868.1_1459218_1460814_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_AP022868.1_1460862_1461384_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_AP022868.1_1461433_1463143_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_AP022868.1_1463146_1464316_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_AP022868.1_1464317_1465409_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|400aa|down_6|NZ_AP022868.1_1465805_1467005_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|545aa|down_7|NZ_AP022868.1_1467153_1468788_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_8|NZ_AP022868.1_1469067_1470351_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_9|NZ_AP022868.1_1470406_1471219_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	5	1560555-1560710	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	AGCGTCGGCCTCGGAACGGGTACG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|107aa|up_3|NZ_AP022868.1_1556946_1557267_+,NA|89aa|down_7|NZ_AP022868.1_1571078_1571345_-	NA|492aa|up_9|NZ_AP022868.1_1541541_1543017_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|276aa|up_8|NZ_AP022868.1_1543126_1543954_+	cd19126, AKR_AKR5A_5G, AKR5A and AKR5G families of aldo-keto reductase (AKR)	NA|167aa|up_7|NZ_AP022868.1_1550055_1550556_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|626aa|up_6|NZ_AP022868.1_1550652_1552530_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|135aa|up_5|NZ_AP022868.1_1552752_1553157_-	pfam13811, DUF4186, Domain of unknown function (DUF4186)	NA|1186aa|up_4|NZ_AP022868.1_1553281_1556839_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|107aa|up_3|NZ_AP022868.1_1556946_1557267_+	NA	NA|267aa|up_2|NZ_AP022868.1_1557347_1558148_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|321aa|up_1|NZ_AP022868.1_1558674_1559637_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|183aa|up_0|NZ_AP022868.1_1559636_1560185_-	PRK14771, PRK14771, lipoprotein signal peptidase; Provisional	NA|101aa|down_0|NZ_AP022868.1_1561725_1562028_-	pfam02325, YGGT, YGGT family	NA|160aa|down_1|NZ_AP022868.1_1562149_1562629_-	pfam04472, SepF, Cell division protein SepF	NA|404aa|down_2|NZ_AP022868.1_1562641_1563853_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|415aa|down_3|NZ_AP022868.1_1563964_1565209_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|491aa|down_4|NZ_AP022868.1_1565353_1566826_-	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|315aa|down_5|NZ_AP022868.1_1567261_1568206_+	cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	NA|918aa|down_6|NZ_AP022868.1_1568288_1571042_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|89aa|down_7|NZ_AP022868.1_1571078_1571345_-	NA	NA|270aa|down_8|NZ_AP022868.1_1571548_1572358_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase	NA|126aa|down_9|NZ_AP022868.1_1572408_1572786_+	pfam01910, Thiamine_BP, Thiamine-binding protein
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	6	1656376-1656449	6	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	CAGCCGCAATACGGCCAGCCCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|131aa|up_9|NZ_AP022868.1_1646111_1646504_+,NA	NA|131aa|up_9|NZ_AP022868.1_1646111_1646504_+	NA	NA|262aa|up_8|NZ_AP022868.1_1646560_1647346_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|422aa|up_7|NZ_AP022868.1_1647393_1648659_-	cd00609, AAT_like, Aspartate aminotransferase family	NA|256aa|up_6|NZ_AP022868.1_1648929_1649697_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|262aa|up_5|NZ_AP022868.1_1649942_1650728_+	pfam14512, TM1586_NiRdase, Putative TM nitroreductase	NA|341aa|up_4|NZ_AP022868.1_1650769_1651792_-	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|218aa|up_3|NZ_AP022868.1_1652034_1652688_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|811aa|up_2|NZ_AP022868.1_1652818_1655251_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|102aa|up_1|NZ_AP022868.1_1655322_1655628_+	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	NA|122aa|up_0|NZ_AP022868.1_1655726_1656092_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|329aa|down_0|NZ_AP022868.1_1656953_1657940_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|486aa|down_1|NZ_AP022868.1_1658238_1659696_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|341aa|down_2|NZ_AP022868.1_1659921_1660944_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|357aa|down_3|NZ_AP022868.1_1660940_1662011_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|514aa|down_4|NZ_AP022868.1_1662012_1663554_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|577aa|down_5|NZ_AP022868.1_1664993_1666724_-	PRK13614, PRK13614, lipoprotein LpqB; Provisional	NA|566aa|down_6|NZ_AP022868.1_1666720_1668418_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|241aa|down_7|NZ_AP022868.1_1668414_1669137_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|460aa|down_8|NZ_AP022868.1_1669194_1670574_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|856aa|down_9|NZ_AP022868.1_1670656_1673224_-	pfam12029, DUF3516, Domain of unknown function (DUF3516)
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	7	1808870-1811409	7,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	WYL,cas2,cas1,cas9	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Type II-C,,Type II-A,Type II-B	GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	39,39,35,35	39	TypeII-C,,TypeII-A,TypeII-B	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|97aa|up_0|NZ_AP022868.1_1808558_1808849_-,NA	NA|1395aa|up_9|NZ_AP022868.1_1792883_1797068_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	WYL|362aa|up_8|NZ_AP022868.1_1797145_1798231_+	pfam13280, WYL, WYL domain	NA|340aa|up_7|NZ_AP022868.1_1798464_1799484_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|431aa|up_6|NZ_AP022868.1_1799697_1800990_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|261aa|up_5|NZ_AP022868.1_1801263_1802046_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|327aa|up_4|NZ_AP022868.1_1802235_1803216_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|725aa|up_3|NZ_AP022868.1_1803392_1805567_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_2|NZ_AP022868.1_1805649_1806387_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|605aa|up_1|NZ_AP022868.1_1806662_1808477_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|97aa|up_0|NZ_AP022868.1_1808558_1808849_-	NA	cas2|111aa|down_0|NZ_AP022868.1_1811459_1811792_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_1|NZ_AP022868.1_1811788_1812694_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1152aa|down_2|NZ_AP022868.1_1812697_1816153_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|473aa|down_3|NZ_AP022868.1_1816347_1817766_-	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|217aa|down_4|NZ_AP022868.1_1819214_1819865_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|518aa|down_5|NZ_AP022868.1_1820032_1821586_-	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|428aa|down_6|NZ_AP022868.1_1821638_1822922_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|225aa|down_7|NZ_AP022868.1_1822918_1823593_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|226aa|down_8|NZ_AP022868.1_1823767_1824445_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|235aa|down_9|NZ_AP022868.1_1824576_1825281_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	8	1951868-1951953	8	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|51aa|up_8|NZ_AP022868.1_1941592_1941745_-,NA|30aa|up_5|NZ_AP022868.1_1943956_1944046_-,NA|211aa|up_4|NZ_AP022868.1_1944237_1944870_-,NA|243aa|down_1|NZ_AP022868.1_1954033_1954762_+,NA|104aa|down_7|NZ_AP022868.1_1961911_1962223_+	NA|545aa|up_9|NZ_AP022868.1_1939799_1941434_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|51aa|up_8|NZ_AP022868.1_1941592_1941745_-	NA	NA|303aa|up_7|NZ_AP022868.1_1942066_1942975_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_AP022868.1_1943105_1943804_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_AP022868.1_1943956_1944046_-	NA	NA|211aa|up_4|NZ_AP022868.1_1944237_1944870_-	NA	NA|513aa|up_3|NZ_AP022868.1_1944997_1946536_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_AP022868.1_1946550_1947675_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_AP022868.1_1947772_1948936_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_AP022868.1_1948937_1949411_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_AP022868.1_1952758_1953826_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NZ_AP022868.1_1954033_1954762_+	NA	NA|348aa|down_2|NZ_AP022868.1_1954802_1955846_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|389aa|down_3|NZ_AP022868.1_1956378_1957545_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|134aa|down_4|NZ_AP022868.1_1957544_1957946_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_5|NZ_AP022868.1_1958756_1959557_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_6|NZ_AP022868.1_1959763_1961944_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|104aa|down_7|NZ_AP022868.1_1961911_1962223_+	NA	NA|304aa|down_8|NZ_AP022868.1_1962219_1963131_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_9|NZ_AP022868.1_1963212_1963755_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated
GCF_011764605.1_ASM1176460v1	NZ_AP022868	Bifidobacterium longum strain Jih1	9	2102195-2102268	9	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	AAATGACGAACCGGGACAGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|59aa|up_0|NZ_AP022868.1_2101175_2101352_+,NA	NA|378aa|up_9|NZ_AP022868.1_2088748_2089882_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|up_8|NZ_AP022868.1_2089882_2091574_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|83aa|up_7|NZ_AP022868.1_2091642_2091891_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_6|NZ_AP022868.1_2091913_2092222_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1023aa|up_5|NZ_AP022868.1_2092373_2095442_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|402aa|up_4|NZ_AP022868.1_2095754_2096960_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|315aa|up_3|NZ_AP022868.1_2097066_2098011_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|483aa|up_2|NZ_AP022868.1_2098186_2099635_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|365aa|up_1|NZ_AP022868.1_2099631_2100726_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_AP022868.1_2101175_2101352_+	NA	NA|485aa|down_0|NZ_AP022868.1_2102347_2103802_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_AP022868.1_2103938_2105051_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_AP022868.1_2105157_2106474_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_AP022868.1_2106634_2108227_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NZ_AP022868.1_2108229_2110092_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|222aa|down_5|NZ_AP022868.1_2110305_2110971_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|426aa|down_6|NZ_AP022868.1_2110967_2112245_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|311aa|down_7|NZ_AP022868.1_2112321_2113254_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_8|NZ_AP022868.1_2113347_2114601_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_9|NZ_AP022868.1_2114649_2115975_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
