The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	4029210	928029	935416	4029210		Staphylococcus_phage(50.0%)	8	NA	NA
WP_167675924.1|928029_929697_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	28.1	1.9e-41
WP_167675926.1|929835_929985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167675928.1|929950_931204_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	54.0	3.3e-99
WP_167675930.1|931316_931766_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_167675932.1|931788_932925_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.6	4.2e-45
WP_167675934.1|932978_933635_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	32.5	3.4e-23
WP_167675936.1|933714_934818_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	38.9	1.3e-64
WP_167675938.1|934939_935416_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.3	4.2e-31
>prophage 2
NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	4029210	953688	964404	4029210	tRNA	uncultured_Mediterranean_phage(33.33%)	7	NA	NA
WP_167675964.1|953688_954438_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	55.1	1.7e-74
WP_167675966.1|954451_955069_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.8	5.8e-33
WP_167675968.1|955120_956044_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_167675970.1|956121_957090_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.5	1.2e-35
WP_167675972.1|957250_959848_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.5	5.1e-30
WP_167675974.1|960211_961273_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.3	1.7e-112
WP_167675976.1|961779_964404_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 3
NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	4029210	2102028	2110744	4029210	tRNA	uncultured_Caudovirales_phage(33.33%)	10	NA	NA
WP_167677694.1|2102028_2102688_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	44.2	4.6e-36
WP_167677696.1|2102747_2103137_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	39.4	4.6e-20
WP_167677698.1|2103149_2103506_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_167677700.1|2103502_2103799_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_167677702.1|2103792_2104143_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_167677704.1|2104393_2105680_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.8	2.0e-96
WP_167677706.1|2105698_2106073_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	36.8	7.9e-09
WP_167677708.1|2106065_2107397_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.3	4.0e-79
WP_167680030.1|2107403_2108027_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_167677710.1|2108056_2110744_-	DUF87 domain-containing protein	NA	A0A218M9A2	Mycobacterium_phage	48.3	4.1e-83
>prophage 4
NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	4029210	2649177	2701197	4029210	integrase,transposase	Escherichia_phage(25.0%)	34	2678223:2678238	2698866:2698881
WP_167678459.1|2649177_2650362_-|transposase	transposase	transposase	A0A191SB13	Nostoc_phage	24.9	1.6e-18
WP_167678461.1|2650926_2652756_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.1	4.9e-27
WP_167678463.1|2652752_2653214_-	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_167678465.1|2653228_2653612_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_167678467.1|2653726_2654278_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.8	5.3e-54
WP_167678469.1|2654274_2655267_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	37.0	6.5e-34
WP_167678471.1|2655263_2656130_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	67.0	1.6e-105
WP_167678473.1|2656173_2657247_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.5	3.2e-95
WP_167678475.1|2657406_2658876_-	capsule assembly Wzi family protein	NA	NA	NA	NA	NA
WP_167678477.1|2659143_2660856_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_167678479.1|2661745_2665792_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.0	1.1e-15
WP_167678481.1|2665855_2676646_-	tandem-95 repeat protein	NA	NA	NA	NA	NA
WP_167678483.1|2677384_2677564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167678485.1|2677722_2678553_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
2678223:2678238	attL	TGATGAGCAAAATTTT	NA	NA	NA	NA
WP_167678487.1|2679179_2680184_-	SEC-C domain-containing protein	NA	NA	NA	NA	NA
WP_167678489.1|2681143_2683204_-	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.3	3.5e-34
WP_167678491.1|2683738_2684038_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_167678493.1|2684130_2684385_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_167678495.1|2684371_2684659_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	59.1	1.8e-21
WP_167674520.1|2684645_2684840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167678497.1|2685069_2685543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167678499.1|2685700_2687299_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_167678501.1|2687291_2690189_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_167678502.1|2690195_2691443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167678504.1|2691883_2693050_+|integrase	site-specific integrase	integrase	A0A0P0ZGT7	Escherichia_phage	22.0	3.8e-17
WP_167678506.1|2693480_2693747_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_167678508.1|2693737_2694244_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_167678510.1|2694385_2695924_-	Fic family protein	NA	NA	NA	NA	NA
WP_167678512.1|2696176_2696893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167678514.1|2696846_2697290_+	hypothetical protein	NA	A0A0A8WJI7	Clostridium_phage	31.6	4.3e-06
WP_167678515.1|2697375_2697837_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_167680065.1|2697833_2699171_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
2698866:2698881	attR	AAAATTTTGCTCATCA	NA	NA	NA	NA
WP_167678517.1|2699747_2700848_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	27.5	3.4e-07
WP_167680066.1|2701095_2701197_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP050314	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence	231478	70467	167139	231478	integrase,transposase	uncultured_virus(23.08%)	66	84827:84843	118539:118554
WP_167680206.1|70467_73446_+|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	22.2	2.1e-35
WP_001120888.1|73863_75357_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_167680207.1|75387_75657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031679.1|75734_76937_-	Tet(D)-related tetracycline efflux MFS transporter	NA	NA	NA	NA	NA
WP_000113092.1|77017_77620_+	tetracycline resistance transcriptional repressor TetR	NA	NA	NA	NA	NA
WP_001120888.1|77798_79292_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001031679.1|79670_80873_-	Tet(D)-related tetracycline efflux MFS transporter	NA	NA	NA	NA	NA
WP_000113092.1|80953_81556_+	tetracycline resistance transcriptional repressor TetR	NA	NA	NA	NA	NA
WP_001120888.1|81734_83228_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_014386803.1|83500_84385_-	Mph(G) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_085286200.1|84389_85613_-	macrolide efflux MFS transporter Mef(C)	NA	A0A1B0RXA6	Streptococcus_phage	36.8	2.3e-57
84827:84843	attL	AAACCACTTCTACAATT	NA	NA	NA	NA
WP_001043260.1|85900_86716_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
84827:84843	attL	AAACCACTTCTACAATT	NA	NA	NA	NA
WP_040522710.1|90268_90538_-	DNA polymerase	NA	A0A218MNF2	uncultured_virus	75.0	1.2e-27
WP_008844764.1|90545_90995_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.9	9.1e-36
WP_008844765.1|91634_92543_+	DNA polymerase III subunit epsilon	NA	A0A2K9V2V7	Faecalibacterium_phage	31.1	6.6e-09
WP_040522712.1|92616_92916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167680208.1|93233_94157_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_167680209.1|95515_95764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680210.1|95774_96239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024592037.1|96378_96783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024608498.1|96775_98581_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_024608497.1|98577_100230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024592040.1|100237_101371_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_167680211.1|101570_102167_-|integrase	tyrosine-type recombinase/integrase	integrase	A3F636	Streptococcus_phage	30.6	1.0e-10
WP_167680212.1|105518_106742_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_167680213.1|106806_107145_-	DUF2946 family protein	NA	NA	NA	NA	NA
106872:106888	attR	AATTGTAGAAGTGGTTT	NA	NA	NA	NA
WP_167680214.1|107393_108137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
106872:106888	attR	AATTGTAGAAGTGGTTT	NA	NA	NA	NA
WP_167680215.1|108206_108929_+	transglutaminase family protein	NA	NA	NA	NA	NA
WP_167680216.1|109187_109709_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_167680217.1|110739_112306_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	30.1	1.3e-09
WP_167680218.1|112793_113840_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_167680219.1|113913_114753_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_167680220.1|114858_115680_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_167680221.1|116290_116692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167680222.1|116750_117329_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_167680223.1|117329_118454_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2I7R1N2	Vibrio_phage	29.9	9.9e-31
WP_167680224.1|118443_118956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680225.1|119468_119891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167680226.1|120244_120796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680227.1|120859_122167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680228.1|122465_123326_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_167680229.1|123335_123668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167680230.1|124051_124612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167680231.1|124671_131043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680232.1|131046_131931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680233.1|133221_133965_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_167680234.1|133967_134591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680235.1|136628_138104_-	NarK family nitrate/nitrite MFS transporter	NA	NA	NA	NA	NA
WP_167680236.1|138691_140215_+|transposase	ISNCY family transposase	transposase	A0A0M3LQE2	Mannheimia_phage	46.1	3.4e-18
WP_167680237.1|140670_141744_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_167680238.1|141740_144029_-	MFS transporter	NA	NA	NA	NA	NA
WP_167680239.1|144427_145603_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_167680240.1|145675_146458_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_167680241.1|146516_147200_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
WP_167680242.1|147209_147923_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
WP_167680243.1|147933_149466_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	36.6	1.1e-19
WP_167680244.1|149481_153207_-	nitrate reductase subunit alpha	NA	NA	NA	NA	NA
WP_167680245.1|153496_155278_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_167680246.1|155580_156786_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	74.6	1.6e-79
WP_167680247.1|156905_157562_-	two-component system response regulator NarL	NA	NA	NA	NA	NA
WP_167680248.1|157870_159484_+	MFS transporter	NA	NA	NA	NA	NA
WP_167680249.1|159567_159939_+	ribonucleotide reductase subunit alpha	NA	NA	NA	NA	NA
WP_167680250.1|161568_162066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167680251.1|162103_163831_-	bifunctional protein-serine/threonine kinase/phosphatase	NA	A0A1V0SD90	Indivirus	20.8	5.6e-09
WP_167680252.1|165412_165787_+	zinc-binding protein	NA	NA	NA	NA	NA
WP_167680253.1|166035_167139_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
