assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011765625.1_ASM1176562v1	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	1	104850-104923	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh	Orphan	CAAGTTTTTCTTCAATTGTAAGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,c2c9_V-U4	NA|92aa|up_9|NZ_CP050315.1_96006_96282_+,NA|77aa|up_8|NZ_CP050315.1_96278_96509_+,NA|358aa|up_6|NZ_CP050315.1_97216_98290_+,NA|424aa|up_5|NZ_CP050315.1_98305_99577_+,NA|236aa|up_4|NZ_CP050315.1_99674_100382_+,NA|734aa|up_3|NZ_CP050315.1_100401_102603_+,NA|165aa|up_2|NZ_CP050315.1_102786_103281_+,NA|288aa|up_1|NZ_CP050315.1_103323_104187_-,NA|77aa|up_0|NZ_CP050315.1_104258_104489_-,NA|332aa|down_0|NZ_CP050315.1_105954_106950_-,NA|61aa|down_1|NZ_CP050315.1_107081_107264_-,NA|407aa|down_2|NZ_CP050315.1_107274_108495_-,NA|436aa|down_3|NZ_CP050315.1_108509_109817_-,NA|437aa|down_4|NZ_CP050315.1_109829_111140_-,NA|201aa|down_5|NZ_CP050315.1_111182_111785_-,NA|426aa|down_6|NZ_CP050315.1_111781_113059_-,NA|129aa|down_7|NZ_CP050315.1_113033_113420_-,NA|200aa|down_8|NZ_CP050315.1_113646_114246_-,NA|362aa|down_9|NZ_CP050315.1_114363_115449_-	NA|92aa|up_9|NZ_CP050315.1_96006_96282_+	NA	NA|77aa|up_8|NZ_CP050315.1_96278_96509_+	NA	NA|219aa|up_7|NZ_CP050315.1_96498_97155_+	pfam12796, Ank_2, Ankyrin repeats (3 copies)	NA|358aa|up_6|NZ_CP050315.1_97216_98290_+	NA	NA|424aa|up_5|NZ_CP050315.1_98305_99577_+	NA	NA|236aa|up_4|NZ_CP050315.1_99674_100382_+	NA	NA|734aa|up_3|NZ_CP050315.1_100401_102603_+	NA	NA|165aa|up_2|NZ_CP050315.1_102786_103281_+	NA	NA|288aa|up_1|NZ_CP050315.1_103323_104187_-	NA	NA|77aa|up_0|NZ_CP050315.1_104258_104489_-	NA	NA|332aa|down_0|NZ_CP050315.1_105954_106950_-	NA	NA|61aa|down_1|NZ_CP050315.1_107081_107264_-	NA	NA|407aa|down_2|NZ_CP050315.1_107274_108495_-	NA	NA|436aa|down_3|NZ_CP050315.1_108509_109817_-	NA	NA|437aa|down_4|NZ_CP050315.1_109829_111140_-	NA	NA|201aa|down_5|NZ_CP050315.1_111182_111785_-	NA	NA|426aa|down_6|NZ_CP050315.1_111781_113059_-	NA	NA|129aa|down_7|NZ_CP050315.1_113033_113420_-	NA	NA|200aa|down_8|NZ_CP050315.1_113646_114246_-	NA	NA|362aa|down_9|NZ_CP050315.1_114363_115449_-	NA
GCF_011765625.1_ASM1176562v1	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	2	194596-197825	1,1,2,3,4	CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	DEDDh	c2c9_V-U4,DEDDh	Unclear	ANCTATCNANATNAGTTGAACATGTTCAACTCTTAGAAGT,AGTTGAACATGTTCAACTCTTAGA,AGTTGAACATGTTCAACTCTTAGA,GAAGCCCTCTACCTCCATATGAGTTGAACATGTTCAACTCTTAGAAGTGAACTCAC,ATGAGTTGAACATGTTCAACTCTTAGAAGT	40,24,24,56,30	0	0	NA	NA	NA:NA:NA:NA:NA	49,29,29,29,29	49	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,c2c9_V-U4	NA|103aa|up_9|NZ_CP050315.1_185769_186078_+,NA|173aa|up_8|NZ_CP050315.1_186196_186715_+,NA|143aa|up_7|NZ_CP050315.1_186716_187145_-,NA|170aa|up_6|NZ_CP050315.1_187200_187710_-,NA|253aa|up_5|NZ_CP050315.1_187829_188588_-,NA|97aa|up_2|NZ_CP050315.1_191797_192088_+,NA|464aa|up_0|NZ_CP050315.1_193121_194513_+,NA|284aa|down_3|NZ_CP050315.1_202953_203805_+,NA|410aa|down_5|NZ_CP050315.1_204936_206166_+,NA|351aa|down_6|NZ_CP050315.1_206149_207202_+,NA|142aa|down_7|NZ_CP050315.1_207347_207773_+,NA|195aa|down_8|NZ_CP050315.1_207826_208411_-,NA|813aa|down_9|NZ_CP050315.1_208421_210860_-	NA|103aa|up_9|NZ_CP050315.1_185769_186078_+	NA	NA|173aa|up_8|NZ_CP050315.1_186196_186715_+	NA	NA|143aa|up_7|NZ_CP050315.1_186716_187145_-	NA	NA|170aa|up_6|NZ_CP050315.1_187200_187710_-	NA	NA|253aa|up_5|NZ_CP050315.1_187829_188588_-	NA	NA|453aa|up_4|NZ_CP050315.1_188695_190054_-	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	NA|400aa|up_3|NZ_CP050315.1_190596_191796_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|97aa|up_2|NZ_CP050315.1_191797_192088_+	NA	NA|285aa|up_1|NZ_CP050315.1_192063_192918_+	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|464aa|up_0|NZ_CP050315.1_193121_194513_+	NA	NA|295aa|down_0|NZ_CP050315.1_199127_200012_+	pfam02387, IncFII_repA, IncFII RepA protein family	NA|356aa|down_1|NZ_CP050315.1_200415_201483_-	PRK09354, recA, recombinase A; Provisional	NA|370aa|down_2|NZ_CP050315.1_201676_202786_+	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|284aa|down_3|NZ_CP050315.1_202953_203805_+	NA	NA|358aa|down_4|NZ_CP050315.1_203819_204893_+	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)	NA|410aa|down_5|NZ_CP050315.1_204936_206166_+	NA	NA|351aa|down_6|NZ_CP050315.1_206149_207202_+	NA	NA|142aa|down_7|NZ_CP050315.1_207347_207773_+	NA	NA|195aa|down_8|NZ_CP050315.1_207826_208411_-	NA	NA|813aa|down_9|NZ_CP050315.1_208421_210860_-	NA
GCF_011765625.1_ASM1176562v1	NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	1	665717-665935	1	PILER-CR	no	DEDDh	csa3,cas3,DEDDh,DinG,cas14j	Unclear	AATGAAGCACAAAAAAGCGACATTAGCTCAGTTGGTAGAGCGATACCTTGC	51	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,c2c9_V-U4	NA,NA|152aa|down_0|NZ_CP050313.1_666519_666975_+	NA|141aa|up_9|NZ_CP050313.1_649992_650415_-	pfam03892, NapB, Nitrate reductase cytochrome c-type subunit (NapB)	NA|828aa|up_8|NZ_CP050313.1_650527_653011_-	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA	NA|385aa|up_7|NZ_CP050313.1_653258_654413_-	COG5621, COG5621, Predicted secreted hydrolase [General function prediction only]	NA|875aa|up_6|NZ_CP050313.1_654412_657037_-	pfam02687, FtsX, FtsX-like permease family	NA|253aa|up_5|NZ_CP050313.1_657051_657810_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|1065aa|up_4|NZ_CP050313.1_658613_661808_-	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	NA|287aa|up_3|NZ_CP050313.1_661872_662733_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|289aa|up_2|NZ_CP050313.1_662748_663615_-	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|354aa|up_1|NZ_CP050313.1_663665_664727_-	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	DEDDh|182aa|up_0|NZ_CP050313.1_664840_665386_+	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|152aa|down_0|NZ_CP050313.1_666519_666975_+	NA	NA|153aa|down_1|NZ_CP050313.1_667120_667579_+	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA|441aa|down_2|NZ_CP050313.1_667581_668904_+	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|635aa|down_3|NZ_CP050313.1_668905_670810_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|315aa|down_4|NZ_CP050313.1_670788_671733_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|85aa|down_5|NZ_CP050313.1_671816_672071_+	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|386aa|down_6|NZ_CP050313.1_673434_674592_+	PRK10930, PRK10930, FtsH protease activity modulator HflK	NA|297aa|down_7|NZ_CP050313.1_674594_675485_+	PRK11029, PRK11029, protease modulator HflC	NA|197aa|down_8|NZ_CP050313.1_675898_676489_+	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|405aa|down_9|NZ_CP050313.1_676488_677703_+	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion]
GCF_011765625.1_ASM1176562v1	NZ_CP050313	Shewanella aestuarii strain PN3F2 chromosome PN3F2, complete sequence	2	3084660-3084807	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j	Orphan	AAATAACCTGACATACATCACAA	23	1	2	3084683-3084724|3084683-3084724	NZ_CP050313.1_386809-386850|NZ_CP050313.1_1555896-1555937	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,c2c9_V-U4	NA|272aa|up_3|NZ_CP050313.1_3075425_3076241_-,NA|604aa|down_4|NZ_CP050313.1_3089037_3090849_+	NA|408aa|up_9|NZ_CP050313.1_3067746_3068970_+	pfam03616, Glt_symporter, Sodium/glutamate symporter	NA|87aa|up_8|NZ_CP050313.1_3069045_3069306_-	TIGR03853, hypothetical_protein, probable metal-binding protein	NA|540aa|up_7|NZ_CP050313.1_3069410_3071030_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|452aa|up_6|NZ_CP050313.1_3071238_3072594_-	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|553aa|up_5|NZ_CP050313.1_3072668_3074327_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|277aa|up_4|NZ_CP050313.1_3074661_3075492_-	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|272aa|up_3|NZ_CP050313.1_3075425_3076241_-	NA	NA|354aa|up_2|NZ_CP050313.1_3076430_3077492_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|1660aa|up_1|NZ_CP050313.1_3078024_3083004_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|516aa|up_0|NZ_CP050313.1_3083008_3084556_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|379aa|down_0|NZ_CP050313.1_3084948_3086085_+	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|568aa|down_1|NZ_CP050313.1_3086087_3087791_+	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|222aa|down_2|NZ_CP050313.1_3087822_3088488_+	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit	NA|189aa|down_3|NZ_CP050313.1_3088493_3089060_+	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group	NA|604aa|down_4|NZ_CP050313.1_3089037_3090849_+	NA	NA|252aa|down_5|NZ_CP050313.1_3093496_3094252_+	cd05390, HypB, nickel incorporation protein HypB	NA|79aa|down_6|NZ_CP050313.1_3094262_3094499_+	pfam01455, HupF_HypC, HupF/HypC family	NA|376aa|down_7|NZ_CP050313.1_3094506_3095634_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|337aa|down_8|NZ_CP050313.1_3095638_3096649_+	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|116aa|down_9|NZ_CP050313.1_3096648_3096996_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA
GCF_011765625.1_ASM1176562v1	NZ_CP050314	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence	1	31590-31803	1	PILER-CR	no		DEDDh,WYL	Orphan	CTGGATATACCTACTCATCAGCTAATAATCGCTGTGAAAAAACAACAACTGTAGCTGCATCTAA	64	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,c2c9_V-U4	NA|252aa|up_9|NZ_CP050314.1_23172_23928_+,NA|167aa|up_7|NZ_CP050314.1_24407_24908_+,NA|162aa|up_6|NZ_CP050314.1_24888_25374_+,NA|156aa|up_5|NZ_CP050314.1_25441_25909_+,NA|121aa|up_1|NZ_CP050314.1_27974_28337_+,NA|224aa|up_0|NZ_CP050314.1_28470_29142_+,NA|52aa|down_2|NZ_CP050314.1_40886_41042_+,NA|283aa|down_5|NZ_CP050314.1_45398_46247_-,NA|100aa|down_7|NZ_CP050314.1_48976_49276_+,NA|125aa|down_9|NZ_CP050314.1_50710_51085_+	NA|252aa|up_9|NZ_CP050314.1_23172_23928_+	NA	NA|154aa|up_8|NZ_CP050314.1_23937_24399_+	PRK11648, PRK11648, metal-dependent hydrolase	NA|167aa|up_7|NZ_CP050314.1_24407_24908_+	NA	NA|162aa|up_6|NZ_CP050314.1_24888_25374_+	NA	NA|156aa|up_5|NZ_CP050314.1_25441_25909_+	NA	NA|134aa|up_4|NZ_CP050314.1_25918_26320_+	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|113aa|up_3|NZ_CP050314.1_26416_26755_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|214aa|up_2|NZ_CP050314.1_26947_27589_-	pfam08536, Whirly, Whirly transcription factor	NA|121aa|up_1|NZ_CP050314.1_27974_28337_+	NA	NA|224aa|up_0|NZ_CP050314.1_28470_29142_+	NA	NA|158aa|down_0|NZ_CP050314.1_39272_39746_+	TIGR02227, Inactive_signal_peptidase_IA	NA|386aa|down_1|NZ_CP050314.1_39732_40890_+	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|52aa|down_2|NZ_CP050314.1_40886_41042_+	NA	NA|294aa|down_3|NZ_CP050314.1_41184_42066_+	pfam06834, TraU, TraU protein	NA|1111aa|down_4|NZ_CP050314.1_42069_45402_+	PRK14877, PRK14877, conjugal transfer mating pair stabilization protein TraN; Provisional	NA|283aa|down_5|NZ_CP050314.1_45398_46247_-	NA	NA|631aa|down_6|NZ_CP050314.1_46512_48405_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|100aa|down_7|NZ_CP050314.1_48976_49276_+	NA	NA|188aa|down_8|NZ_CP050314.1_50078_50642_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|125aa|down_9|NZ_CP050314.1_50710_51085_+	NA
