assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011995665.1_ASM1199566v1	NZ_CP047051	Clavibacter michiganensis subsp. michiganensis strain MSF322 chromosome, complete genome	1	571439-571620	1	PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	TCGGCATCGCCGGATCCGCCG	21	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,WYL,cas3	NA|196aa|up_9|NZ_CP047051.1_559100_559688_-,NA|132aa|up_6|NZ_CP047051.1_564588_564984_-,NA	NA|196aa|up_9|NZ_CP047051.1_559100_559688_-	NA	NA|279aa|up_8|NZ_CP047051.1_559776_560613_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|1149aa|up_7|NZ_CP047051.1_560772_564219_-	sd00006, TPR, Tetratricopeptide repeat	NA|132aa|up_6|NZ_CP047051.1_564588_564984_-	NA	NA|250aa|up_5|NZ_CP047051.1_564980_565730_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|185aa|up_4|NZ_CP047051.1_565726_566281_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|158aa|up_3|NZ_CP047051.1_566413_566887_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|312aa|up_2|NZ_CP047051.1_566999_567935_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|185aa|up_1|NZ_CP047051.1_568001_568556_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|692aa|up_0|NZ_CP047051.1_568555_570631_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|266aa|down_0|NZ_CP047051.1_572006_572804_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|302aa|down_1|NZ_CP047051.1_572933_573839_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|57aa|down_2|NZ_CP047051.1_573912_574083_-	pfam05532, CsbD, CsbD-like	NA|140aa|down_3|NZ_CP047051.1_574267_574687_+	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|725aa|down_4|NZ_CP047051.1_574775_576950_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|336aa|down_5|NZ_CP047051.1_576969_577977_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|359aa|down_6|NZ_CP047051.1_578323_579400_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|300aa|down_7|NZ_CP047051.1_579558_580458_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|415aa|down_8|NZ_CP047051.1_580535_581780_+	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]	NA|365aa|down_9|NZ_CP047051.1_581819_582914_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_011995665.1_ASM1199566v1	NZ_CP047051	Clavibacter michiganensis subsp. michiganensis strain MSF322 chromosome, complete genome	2	868259-868798	1	CRT	no		csa3,DEDDh,WYL,cas3	Orphan	CGTCCNTCNTACNACGAC	18	5	13	868541-868558|868541-868558|868655-868672|868655-868672|868655-868672|868655-868672|868655-868672|868691-868708|868691-868708|868727-868744|868727-868744|868763-868780|868763-868780	NZ_CP047051.1_2953026-2953043|NZ_CP047052.1_24927-24944|NZ_CP047051.1_966142-966125|NZ_CP047051.1_1253888-1253871|NZ_CP047051.1_600944-600961|NZ_CP047051.1_799867-799884|NZ_CP047051.1_1866403-1866420|NZ_CP047051.1_1499988-1499971|NZ_CP047051.1_2414591-2414608|NZ_CP047051.1_2316152-2316135|NZ_CP047051.1_410317-410334|NZ_CP047051.1_868241-868258|NZ_CP047051.1_2316152-2316135	NA	11	11	Orphan	csa3,DEDDh,WYL,cas3	NA|133aa|up_2|NZ_CP047051.1_863301_863700_-,NA	NA|377aa|up_9|NZ_CP047051.1_852973_854104_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|687aa|up_8|NZ_CP047051.1_854433_856494_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|222aa|up_7|NZ_CP047051.1_856582_857248_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|488aa|up_6|NZ_CP047051.1_857310_858774_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|328aa|up_5|NZ_CP047051.1_858933_859917_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|694aa|up_4|NZ_CP047051.1_860029_862111_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|356aa|up_3|NZ_CP047051.1_862237_863305_+	pfam13515, FUSC_2, Fusaric acid resistance protein-like	NA|133aa|up_2|NZ_CP047051.1_863301_863700_-	NA	NA|133aa|up_1|NZ_CP047051.1_863717_864116_-	pfam11625, DUF3253, Protein of unknown function (DUF3253)	NA|1090aa|up_0|NZ_CP047051.1_864304_867574_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|164aa|down_0|NZ_CP047051.1_870208_870700_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|320aa|down_1|NZ_CP047051.1_870834_871794_+	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase	NA|314aa|down_2|NZ_CP047051.1_871790_872732_+	COG1830, FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]	NA|502aa|down_3|NZ_CP047051.1_872785_874291_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|309aa|down_4|NZ_CP047051.1_874344_875271_+	pfam04962, KduI, KduI/IolB family	NA|639aa|down_5|NZ_CP047051.1_875267_877184_+	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|326aa|down_6|NZ_CP047051.1_877283_878261_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|323aa|down_7|NZ_CP047051.1_878257_879226_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|364aa|down_8|NZ_CP047051.1_879314_880406_-	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|607aa|down_9|NZ_CP047051.1_880402_882223_-	pfam02384, N6_Mtase, N-6 DNA Methylase
GCF_011995665.1_ASM1199566v1	NZ_CP047051	Clavibacter michiganensis subsp. michiganensis strain MSF322 chromosome, complete genome	3	1793504-1793574	1	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	AGCTGCGCGCCCGCAAGCGCGCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3	NA|69aa|up_5|NZ_CP047051.1_1784669_1784876_+,NA|123aa|down_4|NZ_CP047051.1_1798498_1798867_-	NA|370aa|up_9|NZ_CP047051.1_1780705_1781815_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|462aa|up_8|NZ_CP047051.1_1781925_1783311_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|178aa|up_7|NZ_CP047051.1_1783362_1783896_-	cd04332, YbaK_like, YbaK-like	NA|242aa|up_6|NZ_CP047051.1_1783947_1784673_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|69aa|up_5|NZ_CP047051.1_1784669_1784876_+	NA	NA|381aa|up_4|NZ_CP047051.1_1785058_1786201_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|420aa|up_3|NZ_CP047051.1_1786205_1787465_+	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|630aa|up_2|NZ_CP047051.1_1787589_1789479_+	PRK05667, dnaG, DNA primase; Validated	NA|552aa|up_1|NZ_CP047051.1_1789679_1791335_+	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|362aa|up_0|NZ_CP047051.1_1791488_1792574_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|571aa|down_0|NZ_CP047051.1_1793594_1795307_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|316aa|down_1|NZ_CP047051.1_1795420_1796368_+	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters	NA|302aa|down_2|NZ_CP047051.1_1796478_1797384_+	cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|343aa|down_3|NZ_CP047051.1_1797450_1798479_+	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|123aa|down_4|NZ_CP047051.1_1798498_1798867_-	NA	NA|189aa|down_5|NZ_CP047051.1_1799097_1799664_-	PRK00150, def, peptide deformylase; Reviewed	NA|304aa|down_6|NZ_CP047051.1_1799703_1800615_+	pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA	NA|420aa|down_7|NZ_CP047051.1_1800795_1802055_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|731aa|down_8|NZ_CP047051.1_1802396_1804589_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|335aa|down_9|NZ_CP047051.1_1804688_1805693_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs
GCF_011995665.1_ASM1199566v1	NZ_CP047051	Clavibacter michiganensis subsp. michiganensis strain MSF322 chromosome, complete genome	4	2330344-2330522	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	CTTCGCCGTCGACTTCTTCGCGC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|46aa|down_2|NZ_CP047051.1_2334919_2335057_+	NA|266aa|up_9|NZ_CP047051.1_2320919_2321717_+	cd05233, SDR_c, classical (c) SDRs	NA|70aa|up_8|NZ_CP047051.1_2321716_2321926_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|416aa|up_7|NZ_CP047051.1_2322005_2323253_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|221aa|up_6|NZ_CP047051.1_2323249_2323912_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|462aa|up_5|NZ_CP047051.1_2323949_2325335_-	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|211aa|up_4|NZ_CP047051.1_2325443_2326076_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|93aa|up_3|NZ_CP047051.1_2326177_2326456_-	pfam11272, DUF3072, Protein of unknown function (DUF3072)	NA|395aa|up_2|NZ_CP047051.1_2326557_2327742_-	pfam13367, PrsW-protease, Protease prsW family	NA|476aa|up_1|NZ_CP047051.1_2327870_2329298_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|312aa|up_0|NZ_CP047051.1_2329356_2330292_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|840aa|down_0|NZ_CP047051.1_2331381_2333901_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|293aa|down_1|NZ_CP047051.1_2333998_2334877_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|46aa|down_2|NZ_CP047051.1_2334919_2335057_+	NA	NA|307aa|down_3|NZ_CP047051.1_2335100_2336021_+	pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain	NA|506aa|down_4|NZ_CP047051.1_2336098_2337616_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|284aa|down_5|NZ_CP047051.1_2337722_2338574_+	COG4328, COG4328, Predicted nuclease (RNAse H fold) [General function prediction only]	NA|249aa|down_6|NZ_CP047051.1_2338595_2339342_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|174aa|down_7|NZ_CP047051.1_2339531_2340053_+	pfam04138, GtrA, GtrA-like protein	NA|426aa|down_8|NZ_CP047051.1_2340071_2341349_-	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|492aa|down_9|NZ_CP047051.1_2341446_2342922_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
