assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011995885.1_ASM1199588v1	NZ_CP047054	Clavibacter michiganensis subsp. michiganensis strain VL527 chromosome, complete genome	1	589412-589593	1	PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	TCGGCATCGCCGGATCCGCCG	21	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,WYL,cas3	NA|196aa|up_8|NZ_CP047054.1_581083_581671_-,NA|132aa|up_6|NZ_CP047054.1_582655_583051_-,NA	NA|286aa|up_9|NZ_CP047054.1_580096_580954_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|196aa|up_8|NZ_CP047054.1_581083_581671_-	NA	NA|279aa|up_7|NZ_CP047054.1_581759_582596_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|132aa|up_6|NZ_CP047054.1_582655_583051_-	NA	NA|217aa|up_5|NZ_CP047054.1_583034_583685_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|185aa|up_4|NZ_CP047054.1_583681_584236_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|158aa|up_3|NZ_CP047054.1_584368_584842_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|292aa|up_2|NZ_CP047054.1_585014_585890_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|185aa|up_1|NZ_CP047054.1_585956_586511_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|698aa|up_0|NZ_CP047054.1_586510_588604_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|266aa|down_0|NZ_CP047054.1_589979_590777_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|302aa|down_1|NZ_CP047054.1_590906_591812_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|57aa|down_2|NZ_CP047054.1_591885_592056_-	pfam05532, CsbD, CsbD-like	NA|140aa|down_3|NZ_CP047054.1_592240_592660_+	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|725aa|down_4|NZ_CP047054.1_592748_594923_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|336aa|down_5|NZ_CP047054.1_594942_595950_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|422aa|down_6|NZ_CP047054.1_596146_597412_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|300aa|down_7|NZ_CP047054.1_597570_598470_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|415aa|down_8|NZ_CP047054.1_598547_599792_+	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]	NA|365aa|down_9|NZ_CP047054.1_599825_600920_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_011995885.1_ASM1199588v1	NZ_CP047054	Clavibacter michiganensis subsp. michiganensis strain VL527 chromosome, complete genome	2	2262743-2263011	1,2	CRISPRCasFinder,PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	GACCAGGGCTTGCGCTCCCCGTC,CGACCAGGGCTTGCGCTCCCCATCACG	23,27	0	0	NA	NA	NA:NA	4,3	4	Orphan	csa3,DEDDh,WYL,cas3	NA|70aa|up_2|NZ_CP047054.1_2260334_2260544_-,NA|330aa|up_0|NZ_CP047054.1_2261583_2262573_-,NA|236aa|down_1|NZ_CP047054.1_2270933_2271641_+,NA|200aa|down_2|NZ_CP047054.1_2271637_2272237_+,NA|46aa|down_4|NZ_CP047054.1_2272889_2273027_-	NA|295aa|up_9|NZ_CP047054.1_2252405_2253290_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|329aa|up_8|NZ_CP047054.1_2253359_2254346_-	PRK00283, xerD, tyrosine recombinase	NA|226aa|up_7|NZ_CP047054.1_2254342_2255020_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|581aa|up_6|NZ_CP047054.1_2255016_2256759_-	PRK05380, pyrG, CTP synthetase; Validated	NA|572aa|up_5|NZ_CP047054.1_2256832_2258548_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|320aa|up_4|NZ_CP047054.1_2258540_2259500_-	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|268aa|up_3|NZ_CP047054.1_2259463_2260267_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|70aa|up_2|NZ_CP047054.1_2260334_2260544_-	NA	NA|347aa|up_1|NZ_CP047054.1_2260553_2261594_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|330aa|up_0|NZ_CP047054.1_2261583_2262573_-	NA	NA|435aa|down_0|NZ_CP047054.1_2269410_2270715_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|236aa|down_1|NZ_CP047054.1_2270933_2271641_+	NA	NA|200aa|down_2|NZ_CP047054.1_2271637_2272237_+	NA	NA|205aa|down_3|NZ_CP047054.1_2272267_2272882_-	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|46aa|down_4|NZ_CP047054.1_2272889_2273027_-	NA	NA|498aa|down_5|NZ_CP047054.1_2273023_2274517_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|413aa|down_6|NZ_CP047054.1_2274521_2275760_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|308aa|down_7|NZ_CP047054.1_2275808_2276732_-	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|406aa|down_8|NZ_CP047054.1_2276881_2278099_-	PRK03244, argD, acetylornithine transaminase	NA|312aa|down_9|NZ_CP047054.1_2278095_2279031_-	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis
GCF_011995885.1_ASM1199588v1	NZ_CP047054	Clavibacter michiganensis subsp. michiganensis strain VL527 chromosome, complete genome	3	2352907-2353085	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	CTTCGCCGTCGACTTCTTCGCGC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|46aa|down_2|NZ_CP047054.1_2357464_2357602_+	NA|266aa|up_9|NZ_CP047054.1_2343488_2344286_+	cd05233, SDR_c, classical (c) SDRs	NA|70aa|up_8|NZ_CP047054.1_2344285_2344495_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|416aa|up_7|NZ_CP047054.1_2344574_2345822_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|221aa|up_6|NZ_CP047054.1_2345818_2346481_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|462aa|up_5|NZ_CP047054.1_2346518_2347904_-	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|211aa|up_4|NZ_CP047054.1_2348012_2348645_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|93aa|up_3|NZ_CP047054.1_2348746_2349025_-	pfam11272, DUF3072, Protein of unknown function (DUF3072)	NA|395aa|up_2|NZ_CP047054.1_2349126_2350311_-	pfam13367, PrsW-protease, Protease prsW family	NA|474aa|up_1|NZ_CP047054.1_2350439_2351861_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|312aa|up_0|NZ_CP047054.1_2351919_2352855_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|840aa|down_0|NZ_CP047054.1_2353947_2356467_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|293aa|down_1|NZ_CP047054.1_2356557_2357436_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|46aa|down_2|NZ_CP047054.1_2357464_2357602_+	NA	NA|305aa|down_3|NZ_CP047054.1_2357645_2358560_+	pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain	NA|506aa|down_4|NZ_CP047054.1_2358637_2360155_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|284aa|down_5|NZ_CP047054.1_2360261_2361113_+	COG4328, COG4328, Predicted nuclease (RNAse H fold) [General function prediction only]	NA|249aa|down_6|NZ_CP047054.1_2361128_2361875_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|174aa|down_7|NZ_CP047054.1_2362064_2362586_+	pfam04138, GtrA, GtrA-like protein	NA|426aa|down_8|NZ_CP047054.1_2362605_2363883_-	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|492aa|down_9|NZ_CP047054.1_2363980_2365456_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
