assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011996085.1_ASM1199608v1	NZ_CP047378	Escherichia coli strain CAU16175 chromosome, complete genome	1	2620258-2620381	1	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|30aa|down_7|NZ_CP047378.1_2629277_2629367_+	NA|471aa|up_9|NZ_CP047378.1_2609711_2611124_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP047378.1_2611680_2611890_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP047378.1_2612345_2612972_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP047378.1_2612992_2615095_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP047378.1_2615107_2615746_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP047378.1_2615809_2616478_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP047378.1_2616474_2617260_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP047378.1_2617263_2618076_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP047378.1_2618087_2619692_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP047378.1_2619817_2620123_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP047378.1_2620695_2621952_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP047378.1_2621992_2623366_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP047378.1_2623580_2624222_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP047378.1_2624261_2625410_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP047378.1_2625700_2626912_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP047378.1_2627024_2627957_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP047378.1_2627953_2628979_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP047378.1_2629277_2629367_+	NA	NA|390aa|down_8|NZ_CP047378.1_2629532_2630702_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP047378.1_2630847_2631429_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011996085.1_ASM1199608v1	NZ_CP047378	Escherichia coli strain CAU16175 chromosome, complete genome	2	4425658-4425869	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	TypeI-E	cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP047378.1_4417470_4418232_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP047378.1_4418212_4419262_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP047378.1_4419258_4419738_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP047378.1_4419737_4420448_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP047378.1_4420466_4420778_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP047378.1_4420971_4421295_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP047378.1_4421344_4421950_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP047378.1_4421949_4423377_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP047378.1_4423378_4424287_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP047378.1_4424538_4425576_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP047378.1_4425965_4426259_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP047378.1_4426258_4427179_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP047378.1_4427175_4427826_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP047378.1_4427807_4428554_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP047378.1_4428564_4429620_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP047378.1_4429631_4430171_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP047378.1_4430167_4431730_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP047378.1_4431827_4434527_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP047378.1_4434880_4435993_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP047378.1_4436069_4436222_-	pfam01848, HOK_GEF, Hok/gef family
GCF_011996085.1_ASM1199608v1	NZ_CP047378	Escherichia coli strain CAU16175 chromosome, complete genome	3	4452920-4453741	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGA	29,27,25	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP047378.1_4454890_4455031_+	NA|122aa|up_9|NZ_CP047378.1_4441121_4441487_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP047378.1_4441564_4442836_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP047378.1_4442826_4443087_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP047378.1_4443103_4443679_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_5|NZ_CP047378.1_4443826_4444720_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP047378.1_4444683_4445463_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_3|NZ_CP047378.1_4445440_4446850_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_2|NZ_CP047378.1_4446871_4448326_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|426aa|up_1|NZ_CP047378.1_4449498_4450776_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP047378.1_4450802_4452281_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP047378.1_4454080_4454752_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP047378.1_4454890_4455031_+	NA	NA|291aa|down_2|NZ_CP047378.1_4455044_4455917_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP047378.1_4455976_4457275_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP047378.1_4457362_4459000_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP047378.1_4459227_4460019_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP047378.1_4460089_4460425_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP047378.1_4460424_4460673_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP047378.1_4460750_4462985_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP047378.1_4463032_4464334_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
