assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012053525.1_ASM1205352v1	NZ_CP050777	Salmonella enterica subsp. enterica serovar Indiana strain SI96 chromosome, complete genome	1	584764-584864	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|177aa|down_1|NZ_CP050777.1_586382_586913_-	NA|448aa|up_9|NZ_CP050777.1_570841_572185_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP050777.1_572812_573265_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP050777.1_573292_574795_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP050777.1_574819_577498_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP050777.1_577719_578121_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP050777.1_578120_579065_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP050777.1_579215_579485_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP050777.1_579726_581862_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP050777.1_581971_582856_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP050777.1_582961_583042_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP050777.1_585077_586322_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP050777.1_586382_586913_-	NA	NA|240aa|down_2|NZ_CP050777.1_587071_587791_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP050777.1_587768_588776_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP050777.1_588953_589850_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP050777.1_589840_590836_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP050777.1_591052_591577_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP050777.1_591570_592074_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP050777.1_592060_592378_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP050777.1_592415_592859_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_012053525.1_ASM1205352v1	NZ_CP050777	Salmonella enterica subsp. enterica serovar Indiana strain SI96 chromosome, complete genome	2	960690-961756	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP050777.1_949238_949775_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP050777.1_949771_950242_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP050777.1_950256_950763_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP050777.1_950782_951556_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP050777.1_951568_954268_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP050777.1_954347_954935_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP050777.1_955539_956340_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP050777.1_956567_958205_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP050777.1_958287_959586_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP050777.1_959721_960393_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP050777.1_961853_962651_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP050777.1_962738_963101_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP050777.1_963524_965324_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP050777.1_965323_967036_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP050777.1_967111_967846_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP050777.1_967933_968887_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP050777.1_969267_971967_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP050777.1_972324_973860_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP050777.1_973876_974479_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP050777.1_974501_975560_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_012053525.1_ASM1205352v1	NZ_CP050777	Salmonella enterica subsp. enterica serovar Indiana strain SI96 chromosome, complete genome	3	978297-979362	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP050777.1_967111_967846_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP050777.1_967933_968887_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP050777.1_969267_971967_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP050777.1_972324_973860_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP050777.1_973876_974479_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP050777.1_974501_975560_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP050777.1_975569_976295_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP050777.1_976294_976999_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP050777.1_976998_977916_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050777.1_977918_978212_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050777.1_979376_980423_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050777.1_980673_981582_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050777.1_981591_983031_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050777.1_983017_983623_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050777.1_983673_983997_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050777.1_984187_984499_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050777.1_984517_985228_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050777.1_985227_985707_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050777.1_985703_986753_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050777.1_986733_987495_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012053525.1_ASM1205352v1	NZ_CP050777	Salmonella enterica subsp. enterica serovar Indiana strain SI96 chromosome, complete genome	4	3619684-3619766	4	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	TGGACACTGGCTGGACATCGGCTGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA|82aa|up_2|NZ_CP050777.1_3616818_3617064_-,NA|100aa|up_1|NZ_CP050777.1_3617548_3617848_-,NA|49aa|down_0|NZ_CP050777.1_3620162_3620309_-,NA|159aa|down_4|NZ_CP050777.1_3622101_3622578_+,NA|202aa|down_5|NZ_CP050777.1_3623200_3623806_+,NA|53aa|down_6|NZ_CP050777.1_3624196_3624355_+,NA|95aa|down_9|NZ_CP050777.1_3625571_3625856_+	NA|108aa|up_9|NZ_CP050777.1_3611973_3612297_-	TIGR01594, Uncharacterized_protein_HI_1416, phage holin, lambda family	NA|230aa|up_8|NZ_CP050777.1_3612940_3613630_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|198aa|up_7|NZ_CP050777.1_3613739_3614333_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|57aa|up_6|NZ_CP050777.1_3614325_3614496_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|150aa|up_5|NZ_CP050777.1_3614488_3614938_-	pfam05772, NinB, NinB protein	NA|141aa|up_4|NZ_CP050777.1_3615864_3616287_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|178aa|up_3|NZ_CP050777.1_3616288_3616822_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|82aa|up_2|NZ_CP050777.1_3616818_3617064_-	NA	NA|100aa|up_1|NZ_CP050777.1_3617548_3617848_-	NA	NA|478aa|up_0|NZ_CP050777.1_3617847_3619281_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP050777.1_3620162_3620309_-	NA	NA|189aa|down_1|NZ_CP050777.1_3620398_3620965_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|84aa|down_2|NZ_CP050777.1_3620994_3621246_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_3|NZ_CP050777.1_3621373_3622066_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|159aa|down_4|NZ_CP050777.1_3622101_3622578_+	NA	NA|202aa|down_5|NZ_CP050777.1_3623200_3623806_+	NA	NA|53aa|down_6|NZ_CP050777.1_3624196_3624355_+	NA	NA|68aa|down_7|NZ_CP050777.1_3624351_3624555_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|313aa|down_8|NZ_CP050777.1_3624625_3625564_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|95aa|down_9|NZ_CP050777.1_3625571_3625856_+	NA
