assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012149945.1_ASM1214994v1	NZ_AP022650	Escherichia coli strain 09-02E	1	965135-965282	1	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	NA,NA	NA|551aa|up_9|NZ_AP022650.1_951717_953370_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_AP022650.1_953513_954413_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_AP022650.1_954733_955429_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_AP022650.1_955854_957513_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_AP022650.1_957509_958466_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_AP022650.1_958616_959732_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_AP022650.1_959728_961675_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_AP022650.1_961747_961972_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_AP022650.1_962294_962615_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_AP022650.1_962645_964922_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_AP022650.1_965665_965884_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_AP022650.1_966168_966873_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_AP022650.1_966914_968636_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_AP022650.1_968636_970403_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_AP022650.1_970525_971491_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_AP022650.1_972034_972529_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_AP022650.1_972663_976653_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_AP022650.1_976811_977423_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_AP022650.1_977433_978777_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_AP022650.1_978867_980160_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_012149945.1_ASM1214994v1	NZ_AP022650	Escherichia coli strain 09-02E	2	2536499-2536625	2	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	NA,NA	NA|395aa|up_9|NZ_AP022650.1_2515406_2516591_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_AP022650.1_2516664_2517441_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_AP022650.1_2517445_2519095_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_AP022650.1_2519095_2523490_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_AP022650.1_2523633_2524257_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_AP022650.1_2524253_2525942_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_AP022650.1_2526090_2528718_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_AP022650.1_2528864_2529587_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_AP022650.1_2529714_2533467_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_AP022650.1_2534162_2536448_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_AP022650.1_2536681_2537812_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_AP022650.1_2537811_2538066_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_AP022650.1_2538119_2538770_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_AP022650.1_2539232_2540309_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_AP022650.1_2540313_2541672_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_AP022650.1_2541944_2543573_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_AP022650.1_2543562_2544822_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_AP022650.1_2544818_2546009_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|304aa|down_8|NZ_AP022650.1_2546201_2547113_+	PRK09956, PRK09956, ISNCY family transposase	NA|74aa|down_9|NZ_AP022650.1_2547125_2547347_+	PRK09956, PRK09956, ISNCY family transposase
GCF_012149945.1_ASM1214994v1	NZ_AP022650	Escherichia coli strain 09-02E	3	4351087-4351219	3	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	Orphan	ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	NA,NA	NA|252aa|up_9|NZ_AP022650.1_4342612_4343368_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_AP022650.1_4343381_4343987_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_AP022650.1_4343983_4345624_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_AP022650.1_4345702_4345972_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_AP022650.1_4345975_4346491_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_AP022650.1_4346493_4347270_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_AP022650.1_4347311_4348094_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_AP022650.1_4348090_4348579_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_AP022650.1_4348745_4350239_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_AP022650.1_4350284_4350986_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_AP022650.1_4351257_4352421_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_AP022650.1_4352430_4354620_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_AP022650.1_4354809_4356141_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_AP022650.1_4356140_4356755_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_AP022650.1_4356793_4358245_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_AP022650.1_4358256_4358802_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_AP022650.1_4364389_4364917_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_AP022650.1_4364898_4365483_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_AP022650.1_4365552_4365822_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_AP022650.1_4365898_4366885_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_012149945.1_ASM1214994v1	NZ_AP022650	Escherichia coli strain 09-02E	4	4900526-4900675	4	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	NA|597aa|up_6|NZ_AP022650.1_4891637_4893428_+,NA	NA|238aa|up_9|NZ_AP022650.1_4889540_4890254_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_AP022650.1_4890324_4890918_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_AP022650.1_4891062_4891515_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|597aa|up_6|NZ_AP022650.1_4891637_4893428_+	NA	NA|335aa|up_5|NZ_AP022650.1_4893483_4894488_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_AP022650.1_4894649_4895066_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_AP022650.1_4895111_4895615_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_AP022650.1_4895807_4897004_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_AP022650.1_4897059_4899915_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_AP022650.1_4899914_4900358_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_AP022650.1_4900711_4902223_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_AP022650.1_4902489_4903590_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_AP022650.1_4903589_4904672_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_AP022650.1_4904832_4906335_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_AP022650.1_4906412_4907411_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_AP022650.1_4907477_4908797_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_AP022650.1_4908861_4909626_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_AP022650.1_4909649_4910681_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_AP022650.1_4910897_4911461_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_AP022650.1_4911464_4912484_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_012149945.1_ASM1214994v1	NZ_AP022652	Escherichia coli strain 09-02E plasmid p2-09-02E, complete sequence	1	252-371	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,WYL,RT	NA,NA|148aa|down_2|NZ_AP022652.1_2329_2773_+,NA|119aa|down_3|NZ_AP022652.1_2912_3269_+,NA|104aa|down_5|NZ_AP022652.1_4351_4663_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|280aa|down_0|NZ_AP022652.1_623_1463_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_AP022652.1_1483_2326_+	pfam01051, Rep_3, Initiator Replication protein	NA|148aa|down_2|NZ_AP022652.1_2329_2773_+	NA	NA|119aa|down_3|NZ_AP022652.1_2912_3269_+	NA	NA|199aa|down_4|NZ_AP022652.1_3320_3917_-	pfam14317, YcxB, YcxB-like protein	NA|104aa|down_5|NZ_AP022652.1_4351_4663_-	NA	NA|77aa|down_6|NZ_AP022652.1_4678_4909_-	pfam09274, ParG, ParG	NA|207aa|down_7|NZ_AP022652.1_4960_5581_-	cd02042, ParAB_family, partition proteins ParAB family	NA|216aa|down_8|NZ_AP022652.1_5875_6523_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|738aa|down_9|NZ_AP022652.1_6656_8870_+	pfam13166, AAA_13, AAA domain
