assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012220405.1_ASM1222040v1	NZ_CP047630	Lactococcus raffinolactis strain Lr_18_12S chromosome, complete genome	1	252602-252747	1	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,csn2,cas2,cas1,cas9	Orphan	GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,csn2,cas2,cas1,cas9	NA|77aa|up_3|NZ_CP047630.1_249382_249613_+,NA|81aa|up_2|NZ_CP047630.1_249616_249859_+,NA	NA|133aa|up_9|NZ_CP047630.1_243019_243418_-	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]	NA|421aa|up_8|NZ_CP047630.1_243656_244919_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|428aa|up_7|NZ_CP047630.1_244908_246192_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|290aa|up_6|NZ_CP047630.1_246265_247135_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|186aa|up_5|NZ_CP047630.1_247142_247700_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|429aa|up_4|NZ_CP047630.1_248099_249386_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|77aa|up_3|NZ_CP047630.1_249382_249613_+	NA	NA|81aa|up_2|NZ_CP047630.1_249616_249859_+	NA	NA|581aa|up_1|NZ_CP047630.1_249882_251625_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|306aa|up_0|NZ_CP047630.1_251591_252509_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|289aa|down_0|NZ_CP047630.1_252814_253681_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|35aa|down_1|NZ_CP047630.1_253826_253931_-	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|330aa|down_2|NZ_CP047630.1_254170_255160_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|287aa|down_3|NZ_CP047630.1_255161_256022_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|147aa|down_4|NZ_CP047630.1_256232_256673_+	pfam08837, DUF1810, Protein of unknown function (DUF1810)	NA|478aa|down_5|NZ_CP047630.1_257025_258459_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|278aa|down_6|NZ_CP047630.1_258559_259393_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|391aa|down_7|NZ_CP047630.1_259513_260686_+	PRK09354, recA, recombinase A; Provisional	NA|133aa|down_8|NZ_CP047630.1_260865_261264_+	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|66aa|down_9|NZ_CP047630.1_261764_261962_-	pfam05532, CsbD, CsbD-like
GCF_012220405.1_ASM1222040v1	NZ_CP047630	Lactococcus raffinolactis strain Lr_18_12S chromosome, complete genome	2	1364223-1366501	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9,csa3	cas3,csa3,DinG,DEDDh,WYL,csn2,cas2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGAGGCATTCAATTCAACACAGCTCTAAAAC,GTTTTGGAGGCATTCAATTCAACACAGCTCTAAAAC,GTTTTGGAGGCATTCAATTCAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	34,34,33	34	TypeII-B,TypeII-A,TypeII-C	cas3,csa3,DinG,DEDDh,WYL,csn2,cas2,cas1,cas9	NA|228aa|up_6|NZ_CP047630.1_1356598_1357282_-,NA	NA|106aa|up_9|NZ_CP047630.1_1352785_1353103_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|838aa|up_8|NZ_CP047630.1_1353210_1355724_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|234aa|up_7|NZ_CP047630.1_1355728_1356430_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|228aa|up_6|NZ_CP047630.1_1356598_1357282_-	NA	NA|520aa|up_5|NZ_CP047630.1_1357496_1359056_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_4|NZ_CP047630.1_1359566_1360475_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|166aa|up_3|NZ_CP047630.1_1360449_1360947_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|458aa|up_2|NZ_CP047630.1_1360970_1362344_-	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional	NA|311aa|up_1|NZ_CP047630.1_1362336_1363269_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|108aa|up_0|NZ_CP047630.1_1363699_1364023_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csn2|221aa|down_0|NZ_CP047630.1_1366659_1367322_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP047630.1_1367311_1367656_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP047630.1_1367652_1368519_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1478aa|down_3|NZ_CP047630.1_1368735_1373169_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|779aa|down_4|NZ_CP047630.1_1373322_1375659_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|187aa|down_5|NZ_CP047630.1_1375667_1376228_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|317aa|down_6|NZ_CP047630.1_1376385_1377336_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|260aa|down_7|NZ_CP047630.1_1378863_1379643_-	pfam13349, DUF4097, Putative adhesin	NA|199aa|down_8|NZ_CP047630.1_1379632_1380229_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|104aa|down_9|NZ_CP047630.1_1380225_1380537_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
