assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	1	1026425-1026819	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|47aa|up_1|NZ_CP041284.1_1025134_1025275_-,NA	NA|434aa|up_9|NZ_CP041284.1_1015831_1017133_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041284.1_1017180_1019415_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041284.1_1019492_1019741_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041284.1_1019740_1020076_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041284.1_1020146_1020938_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041284.1_1021165_1022803_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041284.1_1022890_1024189_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041284.1_1024248_1025121_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041284.1_1025134_1025275_-	NA	NA|224aa|up_0|NZ_CP041284.1_1025413_1026085_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041284.1_1027457_1028936_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041284.1_1028962_1030240_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041284.1_1030558_1031344_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041284.1_1031413_1032868_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP041284.1_1032889_1034299_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041284.1_1034276_1035056_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP041284.1_1035019_1035913_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041284.1_1036060_1036636_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041284.1_1036652_1036913_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041284.1_1036903_1038175_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	2	1047580-1048339	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Unclear	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|192aa|up_9|NZ_CP041284.1_1036060_1036636_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_8|NZ_CP041284.1_1036652_1036913_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_7|NZ_CP041284.1_1036903_1038175_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_6|NZ_CP041284.1_1038252_1038615_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_5|NZ_CP041284.1_1038933_1040733_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|NZ_CP041284.1_1040732_1042445_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|NZ_CP041284.1_1042518_1043253_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_2|NZ_CP041284.1_1043517_1043670_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_1|NZ_CP041284.1_1043862_1044975_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas2|78aa|up_0|NZ_CP041284.1_1047249_1047483_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041284.1_1048421_1049459_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041284.1_1049710_1050619_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041284.1_1050620_1052048_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041284.1_1052047_1052653_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041284.1_1052702_1053026_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041284.1_1053219_1053531_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041284.1_1053549_1054260_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041284.1_1054259_1054739_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041284.1_1054735_1055785_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041284.1_1055765_1056527_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	3	1588693-1588810	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|62aa|up_9|NZ_CP041284.1_1577978_1578164_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP041284.1_1578176_1579076_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP041284.1_1579268_1580459_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP041284.1_1580455_1581715_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP041284.1_1581704_1583333_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP041284.1_1583605_1584964_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP041284.1_1584968_1586045_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP041284.1_1586507_1587158_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041284.1_1587211_1587466_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041284.1_1587465_1588596_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041284.1_1588829_1591115_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP041284.1_1591810_1595563_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP041284.1_1595690_1596413_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP041284.1_1596559_1599187_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP041284.1_1599335_1601024_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP041284.1_1601020_1601644_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP041284.1_1604155_1605805_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP041284.1_1605809_1606586_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP041284.1_1606659_1607844_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP041284.1_1607874_1609197_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	4	2197860-2197983	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA|30aa|down_7|NZ_CP041284.1_2206879_2206969_+	NA|471aa|up_9|NZ_CP041284.1_2187314_2188727_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041284.1_2189283_2189493_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041284.1_2189947_2190574_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041284.1_2190594_2192697_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP041284.1_2192709_2193348_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041284.1_2193411_2194080_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041284.1_2194076_2194862_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041284.1_2194865_2195678_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041284.1_2195689_2197294_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041284.1_2197419_2197725_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041284.1_2198297_2199554_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041284.1_2199594_2200968_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041284.1_2201182_2201824_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041284.1_2201863_2203012_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041284.1_2203302_2204514_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041284.1_2204626_2205559_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041284.1_2205555_2206581_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041284.1_2206879_2206969_+	NA	NA|390aa|down_8|NZ_CP041284.1_2207134_2208304_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041284.1_2208538_2209120_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	5	2836808-2836899	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|61aa|up_9|NZ_CP041284.1_2825886_2826069_-,NA	NA|61aa|up_9|NZ_CP041284.1_2825886_2826069_-	NA	NA|1321aa|up_8|NZ_CP041284.1_2826147_2830110_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP041284.1_2830149_2830788_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP041284.1_2831075_2832167_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041284.1_2832166_2832859_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041284.1_2832870_2833257_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041284.1_2833264_2834065_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041284.1_2834074_2834665_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041284.1_2834675_2835170_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041284.1_2835190_2836519_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041284.1_2837322_2837919_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041284.1_2837939_2838167_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041284.1_2838204_2839446_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP041284.1_2839738_2840995_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP041284.1_2841255_2842176_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP041284.1_2842175_2842481_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP041284.1_2842632_2843232_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP041284.1_2843228_2845775_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP041284.1_2845774_2846947_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP041284.1_2847076_2847769_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	6	3099100-3099244	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|330aa|up_9|NZ_CP041284.1_3086998_3087988_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP041284.1_3088384_3089293_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP041284.1_3089484_3091506_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP041284.1_3092084_3092762_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP041284.1_3092754_3093510_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP041284.1_3093496_3094651_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP041284.1_3094647_3095688_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP041284.1_3095774_3097064_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP041284.1_3097122_3097599_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP041284.1_3097750_3099034_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041284.1_3099267_3101529_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041284.1_3101711_3103145_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041284.1_3103220_3104273_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP041284.1_3104456_3105410_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP041284.1_3105450_3106446_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP041284.1_3106600_3107419_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP041284.1_3107419_3108478_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP041284.1_3108480_3109170_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP041284.1_3109169_3109943_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP041284.1_3110109_3110259_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	7	3317620-3317716	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|231aa|up_9|NZ_CP041284.1_3309415_3310108_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP041284.1_3310327_3310870_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP041284.1_3311340_3312207_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP041284.1_3312208_3312421_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP041284.1_3312528_3313050_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP041284.1_3313085_3314471_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP041284.1_3314644_3315139_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP041284.1_3315141_3315864_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP041284.1_3315981_3316491_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP041284.1_3316487_3317555_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP041284.1_3317749_3318643_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP041284.1_3318639_3319455_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|407aa|down_2|NZ_CP041284.1_3319504_3320725_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP041284.1_3320734_3322402_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP041284.1_3322718_3323768_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP041284.1_3323789_3325025_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP041284.1_3325035_3325821_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP041284.1_3326048_3327194_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP041284.1_3327215_3328517_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP041284.1_3328573_3329935_-	PRK08044, PRK08044, allantoinase AllB
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	8	3855781-3855915	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	1	3855831-3855865	NZ_CP041284.1_3919008-3918974	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA|53aa|down_4|NZ_CP041284.1_3863199_3863358_-	NA|393aa|up_9|NZ_CP041284.1_3843764_3844943_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP041284.1_3845044_3845176_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP041284.1_3845264_3846920_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP041284.1_3847083_3848067_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP041284.1_3848042_3849653_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP041284.1_3849636_3850335_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP041284.1_3850448_3851213_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP041284.1_3851298_3852177_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP041284.1_3852515_3854216_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP041284.1_3854226_3855729_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP041284.1_3855928_3856624_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP041284.1_3856698_3859050_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP041284.1_3859214_3862121_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP041284.1_3862132_3862792_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|53aa|down_4|NZ_CP041284.1_3863199_3863358_-	NA	NA|272aa|down_5|NZ_CP041284.1_3864315_3865131_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP041284.1_3865385_3867740_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP041284.1_3867792_3869079_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP041284.1_3869078_3870068_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP041284.1_3870064_3870886_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_012278675.1_ASM1227867v1	NZ_CP041284	Escherichia coli strain 54 chromosome, complete genome	9	3887755-3887896	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|96aa|up_9|NZ_CP041284.1_3876746_3877034_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP041284.1_3877030_3878317_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP041284.1_3878367_3879309_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP041284.1_3879323_3880094_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP041284.1_3880566_3882081_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP041284.1_3882111_3883254_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP041284.1_3883382_3884600_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP041284.1_3884673_3886227_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP041284.1_3886335_3887121_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP041284.1_3887126_3887717_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP041284.1_3887925_3888321_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP041284.1_3888582_3891804_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP041284.1_3891821_3892970_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP041284.1_3893425_3894247_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP041284.1_3894413_3895328_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP041284.1_3895393_3896344_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP041284.1_3896345_3896795_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP041284.1_3896919_3897414_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP041284.1_3897413_3900230_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP041284.1_3900272_3901214_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_012278675.1_ASM1227867v1	NZ_CP041285	Escherichia coli strain 54 plasmid p54-p2, complete sequence	1	3595-3693	1	CRISPRCasFinder	no			Orphan	CCATTTTGCTACTTTTTTGCTATC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|38aa|up_0|NZ_CP041285.1_2879_2993_-,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|381aa|up_1|NZ_CP041285.1_492_1635_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|38aa|up_0|NZ_CP041285.1_2879_2993_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_012278675.1_ASM1227867v1	NZ_CP041286	Escherichia coli strain 54 plasmid p54-tetX, complete sequence	1	64126-64245	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|145aa|up_7|NZ_CP041286.1_58339_58774_-,NA|28aa|up_6|NZ_CP041286.1_58754_58838_+,NA|94aa|up_3|NZ_CP041286.1_60777_61059_+,NA|326aa|up_2|NZ_CP041286.1_61083_62061_+,NA|119aa|up_1|NZ_CP041286.1_62057_62414_-,NA|86aa|down_2|NZ_CP041286.1_66546_66804_+	NA|145aa|up_9|NZ_CP041286.1_55108_55543_+	PRK13752, PRK13752, mercuric resistance operon transcriptional regulator MerR	NA|235aa|up_8|NZ_CP041286.1_56540_57245_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|145aa|up_7|NZ_CP041286.1_58339_58774_-	NA	NA|28aa|up_6|NZ_CP041286.1_58754_58838_+	NA	NA|215aa|up_5|NZ_CP041286.1_58992_59637_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|221aa|up_4|NZ_CP041286.1_60017_60680_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|94aa|up_3|NZ_CP041286.1_60777_61059_+	NA	NA|326aa|up_2|NZ_CP041286.1_61083_62061_+	NA	NA|119aa|up_1|NZ_CP041286.1_62057_62414_-	NA	NA|279aa|up_0|NZ_CP041286.1_63036_63873_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP041286.1_65106_65358_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP041286.1_65347_65629_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|86aa|down_2|NZ_CP041286.1_66546_66804_+	NA	NA|323aa|down_3|NZ_CP041286.1_66840_67809_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|66aa|down_4|NZ_CP041286.1_68152_68350_-	pfam11666, DUF2933, Protein of unknown function (DUF2933)	NA|826aa|down_5|NZ_CP041286.1_68390_70868_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|147aa|down_6|NZ_CP041286.1_70965_71406_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|1049aa|down_7|NZ_CP041286.1_71492_74639_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|431aa|down_8|NZ_CP041286.1_74649_75942_-	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional	NA|118aa|down_9|NZ_CP041286.1_76055_76409_-	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional
