assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012317185.1_ASM1231718v1	NZ_CP048838	[Clostridium] innocuum strain ATCC 14501 chromosome, complete genome	1	1263675-1264326	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csa3,PrimPol	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	Type I-A	ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC,ATTTAGATCNACAAGCTCCGCGAAAGAGCTTGAC,ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	34,34,34	0	0	NA	NA	NA:NA:NA	9,9,7	9	Orphan	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	NA|291aa|up_2|NZ_CP048838.1_1258471_1259344_+,NA|491aa|down_7|NZ_CP048838.1_1274624_1276097_+	NA|342aa|up_9|NZ_CP048838.1_1249928_1250954_+	cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes	NA|130aa|up_8|NZ_CP048838.1_1250968_1251358_+	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion]	NA|162aa|up_7|NZ_CP048838.1_1251572_1252058_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)	NA|273aa|up_6|NZ_CP048838.1_1252111_1252930_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|439aa|up_5|NZ_CP048838.1_1252951_1254268_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|258aa|up_4|NZ_CP048838.1_1254423_1255197_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|768aa|up_3|NZ_CP048838.1_1255449_1257753_+	cd01948, EAL, EAL domain	NA|291aa|up_2|NZ_CP048838.1_1258471_1259344_+	NA	NA|666aa|up_1|NZ_CP048838.1_1260079_1262077_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|467aa|up_0|NZ_CP048838.1_1262153_1263554_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|390aa|down_0|NZ_CP048838.1_1264692_1265862_+	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional	NA|200aa|down_1|NZ_CP048838.1_1265858_1266458_+	pfam03575, Peptidase_S51, Peptidase family S51	NA|445aa|down_2|NZ_CP048838.1_1266680_1268015_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|514aa|down_3|NZ_CP048838.1_1268137_1269679_+	PRK00074, guaA, GMP synthase; Reviewed	NA|654aa|down_4|NZ_CP048838.1_1270171_1272133_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|160aa|down_5|NZ_CP048838.1_1272870_1273350_-	cd09281, UPF0066, Escherichia coli YaeB and related proteins	NA|274aa|down_6|NZ_CP048838.1_1273421_1274243_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|491aa|down_7|NZ_CP048838.1_1274624_1276097_+	NA	PrimPol|587aa|down_8|NZ_CP048838.1_1276271_1278032_+	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown]	NA|325aa|down_9|NZ_CP048838.1_1278040_1279015_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_012317185.1_ASM1231718v1	NZ_CP048838	[Clostridium] innocuum strain ATCC 14501 chromosome, complete genome	2	1592424-1594426	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	Orphan	ATTTAGATCCACTAGCCTCAGGAGAGGCTAGAC,ATTTAGATCCACTAGCCTCAGGAGAGGCTAGAC,ATTTAGATCCACTAGCCTCAGGAGAGGCTAGAC	33,33,33	0	0	NA	NA	NA:NA:NA	29,29,29	29	Orphan	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	NA,NA|200aa|down_6|NZ_CP048838.1_1603902_1604502_-	NA|244aa|up_9|NZ_CP048838.1_1576984_1577716_-	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB	NA|550aa|up_8|NZ_CP048838.1_1577838_1579488_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|401aa|up_7|NZ_CP048838.1_1579557_1580760_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|556aa|up_6|NZ_CP048838.1_1581938_1583606_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|558aa|up_5|NZ_CP048838.1_1584330_1586004_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|698aa|up_4|NZ_CP048838.1_1586228_1588322_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|179aa|up_3|NZ_CP048838.1_1588657_1589194_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|466aa|up_2|NZ_CP048838.1_1589440_1590838_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|226aa|up_1|NZ_CP048838.1_1590850_1591528_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|228aa|up_0|NZ_CP048838.1_1591643_1592327_+	pfam09560, Spore_YunB, Sporulation protein YunB (Spo_YunB)	NA|793aa|down_0|NZ_CP048838.1_1594685_1597064_-	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|379aa|down_1|NZ_CP048838.1_1597082_1598219_-	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|357aa|down_2|NZ_CP048838.1_1598453_1599524_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|368aa|down_3|NZ_CP048838.1_1599626_1600730_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|352aa|down_4|NZ_CP048838.1_1601978_1603034_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|238aa|down_5|NZ_CP048838.1_1603030_1603744_+	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline	NA|200aa|down_6|NZ_CP048838.1_1603902_1604502_-	NA	NA|326aa|down_7|NZ_CP048838.1_1604686_1605664_+	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|262aa|down_8|NZ_CP048838.1_1605651_1606437_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|529aa|down_9|NZ_CP048838.1_1606426_1608013_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein
GCF_012317185.1_ASM1231718v1	NZ_CP048838	[Clostridium] innocuum strain ATCC 14501 chromosome, complete genome	3	4316301-4316470	3,3	PILER-CR,CRISPRCasFinder	no	cas14k	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	Unclear	ATAGATTTAGATCCACTAGCCTCAGG-GAGGCTAGAC,GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	37,32	0	0	NA	NA	NA:NA	2,2	2	TypeV	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	NA|314aa|up_9|NZ_CP048838.1_4306427_4307369_-,NA|180aa|down_4|NZ_CP048838.1_4325615_4326155_-	NA|314aa|up_9|NZ_CP048838.1_4306427_4307369_-	NA	NA|223aa|up_8|NZ_CP048838.1_4307379_4308048_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|216aa|up_7|NZ_CP048838.1_4308034_4308682_-	PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|310aa|up_6|NZ_CP048838.1_4308716_4309646_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|144aa|up_5|NZ_CP048838.1_4309645_4310077_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|169aa|up_4|NZ_CP048838.1_4310073_4310580_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|287aa|up_3|NZ_CP048838.1_4310598_4311459_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|274aa|up_2|NZ_CP048838.1_4311488_4312310_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|298aa|up_1|NZ_CP048838.1_4312335_4313229_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|282aa|up_0|NZ_CP048838.1_4313642_4314488_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|625aa|down_0|NZ_CP048838.1_4316577_4318452_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|112aa|down_1|NZ_CP048838.1_4318465_4318801_-	PRK02693, PRK02693, apocytochrome f; Reviewed	NA|287aa|down_2|NZ_CP048838.1_4320764_4321625_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|358aa|down_3|NZ_CP048838.1_4321624_4322698_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|180aa|down_4|NZ_CP048838.1_4325615_4326155_-	NA	NA|538aa|down_5|NZ_CP048838.1_4326177_4327791_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|454aa|down_6|NZ_CP048838.1_4327894_4329256_-	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides	NA|512aa|down_7|NZ_CP048838.1_4329368_4330904_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|163aa|down_8|NZ_CP048838.1_4331160_4331649_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|239aa|down_9|NZ_CP048838.1_4331877_4332594_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)
GCF_012317185.1_ASM1231718v1	NZ_CP048838	[Clostridium] innocuum strain ATCC 14501 chromosome, complete genome	4	4356705-4356874	4	CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas2	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	 Type I-U?,Type I-C,Type I-U	GTCTAGCCTCCCTGAGGCTAGTGGATTTAAATT	33	0	0	NA	NA	NA	2	2	TypeI-U?,TypeI-C,TypeI-U	cas14k,cas14j,PD-DExK,csa3,PrimPol,cas3,WYL,DEDDh,DinG,RT,c2c10_CAS-V-U3,cas5,cas8c,cas7,cas4,cas2	NA,NA	NA|478aa|up_9|NZ_CP048838.1_4341402_4342836_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|465aa|up_8|NZ_CP048838.1_4343607_4345002_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|330aa|up_7|NZ_CP048838.1_4345167_4346157_+	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates	NA|627aa|up_6|NZ_CP048838.1_4346222_4348103_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	cas3|789aa|up_5|NZ_CP048838.1_4348240_4350607_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|up_4|NZ_CP048838.1_4351108_4351849_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|627aa|up_3|NZ_CP048838.1_4351832_4353713_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|282aa|up_2|NZ_CP048838.1_4353709_4354555_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|222aa|up_1|NZ_CP048838.1_4354544_4355210_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|98aa|up_0|NZ_CP048838.1_4356245_4356539_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|227aa|down_0|NZ_CP048838.1_4357318_4357999_-	pfam11750, DUF3307, Protein of unknown function (DUF3307)	NA|288aa|down_1|NZ_CP048838.1_4357991_4358855_-	pfam16264, SatD, SatD family (SatD)	NA|495aa|down_2|NZ_CP048838.1_4358980_4360465_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|565aa|down_3|NZ_CP048838.1_4360951_4362646_-	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|339aa|down_4|NZ_CP048838.1_4362995_4364012_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|297aa|down_5|NZ_CP048838.1_4364001_4364892_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|152aa|down_6|NZ_CP048838.1_4365079_4365535_-	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|203aa|down_7|NZ_CP048838.1_4365548_4366157_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|301aa|down_8|NZ_CP048838.1_4366697_4367600_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|363aa|down_9|NZ_CP048838.1_4367799_4368888_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
