The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040617	Campylobacter sp. CFSAN093259 chromosome, complete genome	1688111	505351	578457	1688111	tail,integrase,tRNA,terminase,transposase,plate,capsid	Campylobacter_phage(47.37%)	92	525036:525054	586920:586938
WP_052792835.1|505351_506650_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_020837007.1|506633_508343_+|tRNA	proline--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	24.1	5.2e-07
WP_002854991.1|508339_508729_+	FxsA family protein	NA	NA	NA	NA	NA
WP_002820769.1|508725_509649_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_002867682.1|509645_511448_+	menaquinone biosynthesis decarboxylase	NA	NA	NA	NA	NA
WP_002858519.1|511604_511970_+	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_002884515.1|511972_513904_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_002776169.1|513915_514302_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_002776186.1|514282_514558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002890292.1|514989_515559_+	elongation factor P	NA	NA	NA	NA	NA
WP_002856730.1|515718_516411_+	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002858607.1|516397_517351_+	DUF979 domain-containing protein	NA	NA	NA	NA	NA
WP_002890294.1|517360_518365_+	DUF2891 domain-containing protein	NA	NA	NA	NA	NA
WP_168952599.1|518483_519776_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_002825067.1|519786_520584_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002890302.1|520580_521666_-	FUSC family protein	NA	NA	NA	NA	NA
WP_002890303.1|521662_522895_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	40.4	2.4e-78
WP_002890304.1|522965_523901_+	NAD(P)-binding domain-containing protein	NA	A0A2K9L162	Tupanvirus	26.2	1.2e-05
WP_002890305.1|524081_525410_+	MATE family efflux transporter	NA	NA	NA	NA	NA
525036:525054	attL	GGGGGATTTTTATCTTTAT	NA	NA	NA	NA
WP_002890306.1|525457_526387_-	DUF2860 domain-containing protein	NA	NA	NA	NA	NA
WP_002887667.1|526540_527917_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	36.2	3.3e-68
WP_079263766.1|527979_528582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002858584.1|528572_528779_+	membrane protein	NA	NA	NA	NA	NA
WP_100221710.1|528858_528924_+	DUF3944 domain-containing protein	NA	NA	NA	NA	NA
WP_002858615.1|529307_529586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032598961.1|530605_531070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002865392.1|531395_531677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002852065.1|531682_532552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002852192.1|532560_533628_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_002878902.1|534731_535361_+	LexA family transcriptional regulator	NA	A7YG70	Campylobacter_phage	99.1	1.3e-59
WP_002865000.1|535441_535762_+	hypothetical protein	NA	A7YGI4	Campylobacter_phage	100.0	1.3e-52
WP_002843339.1|535771_535966_+	hypothetical protein	NA	A7YG72	Campylobacter_phage	100.0	1.8e-28
WP_002865266.1|536045_536333_+	hypothetical protein	NA	A7YGI8	Campylobacter_phage	100.0	6.6e-48
WP_025985917.1|536362_537178_-	DNA adenine methylase	NA	A7YGW6	Campylobacter_phage	99.6	2.4e-151
WP_002865380.1|537379_537868_-	phage virion morphogenesis protein	NA	A7YGE7	Campylobacter_phage	100.0	2.0e-89
WP_168952600.1|537871_540088_-|tail	phage tail tape measure protein	tail	A7YGX1	Campylobacter_phage	99.7	0.0e+00
WP_002865378.1|540129_540435_+	hypothetical protein	NA	A7YGX3	Campylobacter_phage	100.0	2.7e-39
WP_002873740.1|540546_540786_-|tail	phage tail assembly protein	tail	A7YGZ3	Campylobacter_phage	93.8	9.4e-24
WP_002865376.1|540938_541448_-|tail	tail protein	tail	A7YG76	Campylobacter_phage	100.0	3.3e-90
WP_002878906.1|541474_542668_-|tail	tail sheath protein	tail	A7YGT4	Campylobacter_phage	98.2	1.2e-196
WP_002878907.1|542686_543694_-	hypothetical protein	NA	A7YGZ7	Campylobacter_phage	99.7	6.5e-191
WP_002878908.1|543690_544077_-	DUF1353 domain-containing protein	NA	A7YGA5	Campylobacter_phage	97.5	1.2e-65
WP_002878909.1|544073_544580_-	DUF4376 domain-containing protein	NA	A7YGK2	Campylobacter_phage	100.0	2.0e-87
WP_002896214.1|544604_545636_-|tail	phage tail protein	tail	A7YGF9	Campylobacter_phage	99.1	3.1e-188
WP_002878911.1|545635_546256_-|tail	phage tail protein I	tail	A7YH02	Campylobacter_phage	96.6	2.8e-59
WP_002878912.1|546252_547419_-|plate	baseplate J/gp47 family protein	plate	A0A1X9SH02	Bradyrhizobium_phage	25.8	3.3e-13
WP_002795239.1|547415_547706_-	GPW/gp25 family protein	NA	Q8H9N4	Vibrio_phage	40.8	2.7e-09
WP_002795238.1|547702_547894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002827116.1|547902_548535_-|plate	phage baseplate assembly protein V	plate	V5YUM9	Pseudomonas_phage	35.6	4.6e-09
WP_002784492.1|548534_548849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002784496.1|548960_549209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002865466.1|549205_549547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002878913.1|549557_549947_-	DUF882 domain-containing protein	NA	A0A1X9Q0V8	Human_gokushovirus	46.3	6.5e-22
WP_002784501.1|550094_550529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002865468.1|550530_551346_+	hypothetical protein	NA	A0A2H4JAW3	uncultured_Caudovirales_phage	48.4	2.9e-24
WP_002784505.1|551348_551876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002865469.1|551878_552856_+|capsid	major capsid protein	capsid	R9TRN2	Rhizobium_phage	23.4	3.3e-06
WP_002855185.1|552972_553431_+	DUF1320 family protein	NA	NA	NA	NA	NA
WP_002803360.1|553423_554023_+	DUF1804 family protein	NA	NA	NA	NA	NA
WP_002865471.1|554022_555693_+|terminase	phage terminase large subunit	terminase	A0A0A1IW02	Pseudomonas_phage	41.6	8.0e-93
WP_002865472.1|555702_557079_+	DUF935 family protein	NA	A0A2H4JHL1	uncultured_Caudovirales_phage	26.2	1.9e-15
WP_002865473.1|557080_558319_+	hypothetical protein	NA	A0A0A1IX74	Pseudomonas_phage	28.4	9.6e-19
WP_002784519.1|558443_558818_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002784520.1|558810_559002_+|tail	tail protein	tail	NA	NA	NA	NA
WP_002855003.1|558995_559973_+|tail	tail protein	tail	A0A219Y9Y2	Aeromonas_phage	25.7	6.2e-13
WP_168952601.1|559969_560875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002865476.1|560840_561047_-	CJH_07325 family protein	NA	S5VYW8	Campylobacter_phage	47.0	2.4e-07
WP_043012815.1|561168_561453_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_002852234.1|561546_562218_+	endonuclease	NA	NA	NA	NA	NA
WP_002795452.1|562209_562485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002865478.1|562531_562981_-	DUF1018 domain-containing protein	NA	NA	NA	NA	NA
WP_002878916.1|562977_563670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002784531.1|563669_563939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002878917.1|563935_564898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002791413.1|565009_565396_-	hypothetical protein	NA	D5GVQ0	Campylobacter_virus	56.4	2.7e-36
WP_002791414.1|565392_565665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002791416.1|565728_565908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168952602.1|565904_566390_-	host-nuclease inhibitor protein Gam	NA	A0A2K9VGT9	Faecalibacterium_phage	33.3	1.2e-17
WP_002791419.1|566496_566838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002824157.1|566894_567080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002795448.1|567076_567268_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_002806833.1|567270_568194_-	AAA family ATPase	NA	A0A2H4JAW1	uncultured_Caudovirales_phage	24.5	3.9e-09
WP_002878918.1|568264_570340_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002826948.1|570336_570537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002791430.1|570686_571361_+	LexA family transcriptional regulator	NA	X2KRC9	Campylobacter_phage	32.3	1.4e-24
WP_168952603.1|571360_572062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002852104.1|572824_573844_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	36.7	1.2e-59
WP_002852081.1|573855_574299_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	34.0	7.7e-11
WP_002852093.1|574316_576017_+	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	28.9	2.2e-53
WP_002852211.1|576013_576478_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002852180.1|576474_577440_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_002852279.1|577428_578457_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
586920:586938	attR	GGGGGATTTTTATCTTTAT	NA	NA	NA	NA
>prophage 2
NZ_CP040617	Campylobacter sp. CFSAN093259 chromosome, complete genome	1688111	1408403	1418646	1688111		Tupanvirus(25.0%)	9	NA	NA
WP_002917584.1|1408403_1409744_+	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	25.6	3.8e-05
WP_002890917.1|1411642_1412308_-	NTP transferase domain-containing protein	NA	A0A2K9L821	Tupanvirus	27.2	2.4e-08
WP_002890914.1|1412295_1412901_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	34.4	1.8e-15
WP_002917287.1|1412888_1413908_-	D-glycero-D-manno-heptose 7-phosphate kinase	NA	A0A222YW25	Synechococcus_phage	41.3	1.2e-59
WP_002917288.1|1413904_1414936_-	GDP-mannose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	72.1	2.1e-144
WP_002890912.1|1414944_1415985_-	NAD-dependent epimerase/dehydratase family protein	NA	M1HKX0	Paramecium_bursaria_Chlorella_virus	40.8	4.8e-64
WP_079460764.1|1415977_1417165_-	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	42.9	1.4e-78
WP_002889995.1|1417168_1418098_-	FkbM family methyltransferase	NA	NA	NA	NA	NA
WP_002889981.1|1418100_1418646_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	A0A1D7XFA9	Escherichia_phage	30.2	1.1e-14
