assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934495.1_ASM1293449v1	NZ_CP051733	Escherichia coli strain SCU-109 chromosome, complete genome	1	1420391-1420532	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|36aa|up_4|NZ_CP051733.1_1416613_1416721_-,NA	NA|354aa|up_9|NZ_CP051733.1_1409854_1410916_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP051733.1_1410912_1411644_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP051733.1_1411658_1414118_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP051733.1_1414168_1414735_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP051733.1_1415124_1416408_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP051733.1_1416613_1416721_-	NA	NA|135aa|up_3|NZ_CP051733.1_1417101_1417506_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP051733.1_1417499_1417847_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP051733.1_1417846_1419613_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP051733.1_1419628_1420345_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP051733.1_1420694_1423496_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP051733.1_1423510_1424728_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP051733.1_1424821_1425988_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP051733.1_1425987_1426857_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|302aa|down_4|NZ_CP051733.1_1427522_1428428_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_5|NZ_CP051733.1_1428461_1429064_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_6|NZ_CP051733.1_1429073_1430726_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_7|NZ_CP051733.1_1430833_1432114_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_8|NZ_CP051733.1_1432274_1432592_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_9|NZ_CP051733.1_1432588_1433959_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
GCF_012934495.1_ASM1293449v1	NZ_CP051733	Escherichia coli strain SCU-109 chromosome, complete genome	2	1489056-1489144	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|103aa|up_7|NZ_CP051733.1_1484818_1485127_-,NA|57aa|up_6|NZ_CP051733.1_1485211_1485382_-,NA|100aa|up_5|NZ_CP051733.1_1485994_1486294_-,NA|123aa|up_4|NZ_CP051733.1_1486697_1487066_-,NA|54aa|up_0|NZ_CP051733.1_1488523_1488685_+,NA|69aa|down_2|NZ_CP051733.1_1491728_1491935_+,NA|90aa|down_8|NZ_CP051733.1_1493616_1493886_+	NA|161aa|up_9|NZ_CP051733.1_1483453_1483936_-	pfam05565, Sipho_Gp157, Siphovirus Gp157	NA|301aa|up_8|NZ_CP051733.1_1483919_1484822_-	pfam03837, RecT, RecT family	NA|103aa|up_7|NZ_CP051733.1_1484818_1485127_-	NA	NA|57aa|up_6|NZ_CP051733.1_1485211_1485382_-	NA	NA|100aa|up_5|NZ_CP051733.1_1485994_1486294_-	NA	NA|123aa|up_4|NZ_CP051733.1_1486697_1487066_-	NA	NA|239aa|up_3|NZ_CP051733.1_1487084_1487801_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|65aa|up_2|NZ_CP051733.1_1487907_1488102_+	pfam09048, Cro, Cro	NA|93aa|up_1|NZ_CP051733.1_1488210_1488489_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|54aa|up_0|NZ_CP051733.1_1488523_1488685_+	NA	NA|479aa|down_0|NZ_CP051733.1_1489551_1490988_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|204aa|down_1|NZ_CP051733.1_1491069_1491681_+	pfam13392, HNH_3, HNH endonuclease	NA|69aa|down_2|NZ_CP051733.1_1491728_1491935_+	NA	NA|149aa|down_3|NZ_CP051733.1_1491942_1492389_+	pfam05772, NinB, NinB protein	NA|176aa|down_4|NZ_CP051733.1_1492385_1492913_+	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|59aa|down_5|NZ_CP051733.1_1492909_1493086_+	pfam05322, NinE, NINE Protein	NA|120aa|down_6|NZ_CP051733.1_1493088_1493448_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_7|NZ_CP051733.1_1493447_1493624_+	pfam05810, NinF, NinF protein	NA|90aa|down_8|NZ_CP051733.1_1493616_1493886_+	NA	NA|97aa|down_9|NZ_CP051733.1_1493885_1494176_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)
GCF_012934495.1_ASM1293449v1	NZ_CP051733	Escherichia coli strain SCU-109 chromosome, complete genome	3	3675343-3676042	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP051733.1_3667155_3667917_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP051733.1_3667897_3668947_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP051733.1_3668943_3669423_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP051733.1_3669422_3670133_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP051733.1_3670151_3670463_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP051733.1_3670656_3670980_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP051733.1_3671029_3671635_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP051733.1_3671634_3673062_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP051733.1_3673063_3673972_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP051733.1_3674223_3675261_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP051733.1_3676138_3676432_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP051733.1_3676428_3677352_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP051733.1_3677348_3677999_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP051733.1_3677980_3678727_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP051733.1_3678737_3679793_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP051733.1_3679807_3680344_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP051733.1_3680340_3681903_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP051733.1_3682000_3684700_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP051733.1_3684894_3685047_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP051733.1_3685311_3686046_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_012934495.1_ASM1293449v1	NZ_CP051733	Escherichia coli strain SCU-109 chromosome, complete genome	4	3703181-3704368	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|87aa|up_9|NZ_CP051733.1_3691651_3691912_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP051733.1_3691928_3692504_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP051733.1_3692638_3693987_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|298aa|up_6|NZ_CP051733.1_3694086_3694980_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP051733.1_3694943_3695723_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP051733.1_3695700_3697110_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP051733.1_3697131_3698586_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP051733.1_3698655_3699441_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP051733.1_3699760_3701038_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP051733.1_3701064_3702543_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP051733.1_3704706_3705378_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP051733.1_3705671_3706544_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP051733.1_3706603_3707902_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP051733.1_3707989_3709627_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP051733.1_3709854_3710646_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP051733.1_3710717_3711053_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP051733.1_3711052_3711301_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP051733.1_3711378_3713613_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP051733.1_3713660_3714962_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP051733.1_3715018_3717775_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
