assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	1	825909-826020	1	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	AAAAGAACAGATTTTAAAACAATTGCATA	29	1	1	825938-825991	NZ_CP051725.1_825852-825905	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA|52aa|down_7|NZ_CP051725.1_839561_839717_-	NA|408aa|up_9|NZ_CP051725.1_814150_815374_+	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|152aa|up_8|NZ_CP051725.1_815390_815846_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|188aa|up_7|NZ_CP051725.1_815849_816413_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|124aa|up_6|NZ_CP051725.1_816409_816781_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|202aa|up_5|NZ_CP051725.1_816777_817383_+	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J	NA|326aa|up_4|NZ_CP051725.1_817379_818357_+	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|393aa|up_3|NZ_CP051725.1_818353_819532_+	PRK09662, PRK09662, GspL-like protein; Provisional	NA|179aa|up_2|NZ_CP051725.1_819533_820070_+	PRK09731, PRK09731, type II secretion system protein	NA|259aa|up_1|NZ_CP051725.1_821127_821904_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|225aa|up_0|NZ_CP051725.1_821900_822575_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|393aa|down_0|NZ_CP051725.1_829352_830531_+	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|390aa|down_1|NZ_CP051725.1_830869_832039_-	cd16441, beta_Kdo_transferase_KpsS, beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS	NA|676aa|down_2|NZ_CP051725.1_832073_834101_-	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]	NA|247aa|down_3|NZ_CP051725.1_834097_834838_-	PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|559aa|down_4|NZ_CP051725.1_834847_836524_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|383aa|down_5|NZ_CP051725.1_836547_837696_-	TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	NA|328aa|down_6|NZ_CP051725.1_837767_838751_-	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein	NA|52aa|down_7|NZ_CP051725.1_839561_839717_-	NA	NA|132aa|down_8|NZ_CP051725.1_841074_841470_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|282aa|down_9|NZ_CP051725.1_841538_842384_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	2	1611805-1611918	2	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA	NA|268aa|up_9|NZ_CP051725.1_1600749_1601553_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|309aa|up_8|NZ_CP051725.1_1601593_1602520_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP051725.1_1602712_1603903_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP051725.1_1603899_1605159_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP051725.1_1605148_1606777_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP051725.1_1607049_1608408_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP051725.1_1608412_1609489_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP051725.1_1609691_1610342_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP051725.1_1610395_1610650_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP051725.1_1610649_1611780_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP051725.1_1611969_1614255_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP051725.1_1614936_1618695_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP051725.1_1618834_1619557_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP051725.1_1619703_1622331_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP051725.1_1622479_1624168_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP051725.1_1624164_1624788_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP051725.1_1624931_1629326_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP051725.1_1629326_1630976_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP051725.1_1630980_1631757_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP051725.1_1631830_1633015_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	3	2338892-2339015	3	CRISPRCasFinder	no	DEDDh	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA|30aa|down_7|NZ_CP051725.1_2347911_2348001_+	NA|471aa|up_9|NZ_CP051725.1_2328343_2329756_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051725.1_2330313_2330523_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051725.1_2330978_2331605_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051725.1_2331625_2333728_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051725.1_2333740_2334379_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051725.1_2334442_2335111_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051725.1_2335107_2335893_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051725.1_2335896_2336709_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP051725.1_2336714_2338325_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051725.1_2338450_2338756_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051725.1_2339329_2340586_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051725.1_2340626_2342000_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051725.1_2342214_2342856_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051725.1_2342895_2344044_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051725.1_2344334_2345546_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051725.1_2345658_2346591_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051725.1_2346587_2347613_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051725.1_2347911_2348001_+	NA	NA|390aa|down_8|NZ_CP051725.1_2348166_2349336_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051725.1_2349481_2350063_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	4	3116505-3116596	4	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA|70aa|up_9|NZ_CP051725.1_3105755_3105965_-,NA	NA|70aa|up_9|NZ_CP051725.1_3105755_3105965_-	NA	NA|1321aa|up_8|NZ_CP051725.1_3106019_3109982_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051725.1_3110021_3110660_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051725.1_3110947_3112039_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051725.1_3112038_3112731_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051725.1_3112742_3113129_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051725.1_3113136_3113937_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051725.1_3113946_3114537_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051725.1_3114547_3115042_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051725.1_3115062_3116391_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051725.1_3117019_3117616_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051725.1_3117636_3117864_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051725.1_3117901_3119143_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP051725.1_3119677_3120598_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP051725.1_3120597_3120903_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP051725.1_3121258_3121858_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP051725.1_3121854_3124401_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP051725.1_3124400_3125573_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP051725.1_3125702_3126395_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP051725.1_3126367_3127396_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	5	4141050-4141182	1	PILER-CR	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA	NA|105aa|up_9|NZ_CP051725.1_4132449_4132764_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP051725.1_4132766_4133000_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP051725.1_4133085_4133565_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051725.1_4133756_4135619_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051725.1_4135611_4136142_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051725.1_4136249_4137581_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051725.1_4137639_4137927_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051725.1_4137923_4139210_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051725.1_4139232_4140174_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051725.1_4140188_4140959_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051725.1_4141431_4142946_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051725.1_4142976_4144119_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051725.1_4144246_4145464_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051725.1_4145536_4147090_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051725.1_4147198_4147984_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051725.1_4147989_4148580_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051725.1_4148698_4149094_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP051725.1_4149354_4152576_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051725.1_4152593_4153742_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051725.1_4154197_4155019_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_012934535.1_ASM1293453v1	NZ_CP051725	Escherichia coli strain SCU-112 chromosome, complete genome	6	4352793-4352932	5	CRISPRCasFinder	no		WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA	NA|340aa|up_9|NZ_CP051725.1_4341003_4342023_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP051725.1_4342026_4342590_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP051725.1_4342806_4343838_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP051725.1_4343861_4344626_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP051725.1_4344690_4346010_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP051725.1_4346076_4347075_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP051725.1_4347152_4348655_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP051725.1_4348815_4349898_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP051725.1_4349897_4350998_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP051725.1_4351264_4352776_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP051725.1_4353033_4353477_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP051725.1_4353476_4356332_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP051725.1_4356378_4357566_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP051725.1_4357758_4358262_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP051725.1_4358439_4358856_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP051725.1_4359017_4360022_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP051725.1_4360066_4360519_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP051725.1_4361196_4362417_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP051725.1_4362427_4363360_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP051725.1_4363383_4364388_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
