assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	1	1100222-1101043	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP051698.1_1098930_1099071_-,NA	NA|434aa|up_9|NZ_CP051698.1_1089627_1090929_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP051698.1_1090976_1093211_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP051698.1_1093288_1093537_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP051698.1_1093536_1093872_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP051698.1_1093942_1094734_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP051698.1_1094961_1096599_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP051698.1_1096686_1097985_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP051698.1_1098044_1098917_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP051698.1_1098930_1099071_-	NA	NA|224aa|up_0|NZ_CP051698.1_1099209_1099881_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP051698.1_1101681_1103160_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_CP051698.1_1104782_1105568_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_CP051698.1_1105637_1107092_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_CP051698.1_1107113_1108523_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP051698.1_1108500_1109280_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_5|NZ_CP051698.1_1109243_1110137_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP051698.1_1110284_1110860_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP051698.1_1110876_1111137_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP051698.1_1111127_1112399_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_CP051698.1_1112476_1112839_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	2	1126747-1127509	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_CP051698.1_1116742_1117477_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP051698.1_1117741_1117894_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|up_7|NZ_CP051698.1_1118131_1120789_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP051698.1_1120886_1122449_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP051698.1_1122445_1122982_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP051698.1_1122993_1124049_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP051698.1_1124059_1124806_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP051698.1_1124787_1125438_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP051698.1_1125434_1126355_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP051698.1_1126354_1126648_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP051698.1_1127590_1128628_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP051698.1_1128879_1129788_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP051698.1_1129789_1131217_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP051698.1_1131216_1131822_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP051698.1_1131871_1132195_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP051698.1_1132388_1132700_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP051698.1_1132718_1133429_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP051698.1_1133428_1133908_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP051698.1_1133904_1134954_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP051698.1_1134934_1135696_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	3	1865235-1865371	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TCTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|249aa|up_9|NZ_CP051698.1_1854097_1854844_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|NZ_CP051698.1_1854859_1855408_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|NZ_CP051698.1_1855433_1856555_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|NZ_CP051698.1_1856557_1857523_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_5|NZ_CP051698.1_1857525_1858005_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|NZ_CP051698.1_1858001_1859225_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|NZ_CP051698.1_1859227_1860664_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP051698.1_1860856_1862227_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP051698.1_1862281_1863676_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP051698.1_1863677_1865156_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP051698.1_1865431_1866712_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP051698.1_1866708_1867929_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP051698.1_1867939_1869334_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|332aa|down_3|NZ_CP051698.1_1869491_1870487_+	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|298aa|down_4|NZ_CP051698.1_1870729_1871623_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|207aa|down_5|NZ_CP051698.1_1871983_1872604_+	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family	NA|347aa|down_6|NZ_CP051698.1_1872608_1873649_+	TIGR03569, ORF_8_similar_to_NeuB_family, N-acetylneuraminate synthase	NA|422aa|down_7|NZ_CP051698.1_1873654_1874920_+	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety	NA|469aa|down_8|NZ_CP051698.1_1881730_1883137_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|389aa|down_9|NZ_CP051698.1_1883384_1884551_+	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	4	2224838-2224961	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP051698.1_2233857_2233947_+	NA|471aa|up_9|NZ_CP051698.1_2214291_2215704_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051698.1_2216260_2216470_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051698.1_2216925_2217552_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051698.1_2217572_2219675_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051698.1_2219687_2220326_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051698.1_2220389_2221058_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051698.1_2221054_2221840_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051698.1_2221843_2222656_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051698.1_2222667_2224272_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051698.1_2224397_2224703_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051698.1_2225275_2226532_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051698.1_2226572_2227946_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051698.1_2228160_2228802_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051698.1_2228841_2229990_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051698.1_2230280_2231492_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051698.1_2231604_2232537_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051698.1_2232533_2233559_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051698.1_2233857_2233947_+	NA	NA|390aa|down_8|NZ_CP051698.1_2234112_2235282_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051698.1_2235427_2236009_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	5	2939849-2939940	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP051698.1_2929099_2929309_-,NA	NA|70aa|up_9|NZ_CP051698.1_2929099_2929309_-	NA	NA|1321aa|up_8|NZ_CP051698.1_2929363_2933326_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051698.1_2933365_2934004_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051698.1_2934291_2935383_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051698.1_2935382_2936075_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051698.1_2936086_2936473_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051698.1_2936480_2937281_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051698.1_2937290_2937881_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051698.1_2937891_2938386_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051698.1_2938406_2939735_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051698.1_2940363_2940960_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051698.1_2940980_2941208_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051698.1_2941245_2942487_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|395aa|down_3|NZ_CP051698.1_2942779_2943964_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP051698.1_2944296_2945217_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP051698.1_2945216_2945522_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP051698.1_2945614_2946214_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP051698.1_2946210_2948757_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP051698.1_2948756_2949929_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP051698.1_2950058_2950751_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	6	3204602-3204746	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|330aa|up_9|NZ_CP051698.1_3192500_3193490_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP051698.1_3193886_3194795_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP051698.1_3194986_3197008_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP051698.1_3197586_3198264_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP051698.1_3198256_3199012_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP051698.1_3198998_3200153_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP051698.1_3200149_3201190_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP051698.1_3201276_3202566_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP051698.1_3202624_3203101_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP051698.1_3203252_3204536_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP051698.1_3204769_3207031_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP051698.1_3207213_3208647_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP051698.1_3208722_3209775_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP051698.1_3209958_3210912_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP051698.1_3210952_3211948_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP051698.1_3212102_3212921_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP051698.1_3212921_3213980_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP051698.1_3213982_3214672_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP051698.1_3214671_3215445_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP051698.1_3215611_3215761_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	7	3443955-3444051	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_CP051698.1_3435740_3436433_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP051698.1_3436652_3437195_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP051698.1_3437675_3438542_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP051698.1_3438543_3438756_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP051698.1_3438863_3439385_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP051698.1_3439420_3440806_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP051698.1_3440979_3441474_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP051698.1_3441476_3442199_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP051698.1_3442316_3442826_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP051698.1_3442822_3443890_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP051698.1_3444084_3444978_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP051698.1_3444974_3445790_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP051698.1_3445800_3447060_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP051698.1_3447069_3448737_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP051698.1_3449053_3450103_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP051698.1_3450124_3451360_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP051698.1_3451370_3452156_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP051698.1_3452284_3453430_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP051698.1_3453451_3454753_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP051698.1_3454809_3456171_-	PRK08044, PRK08044, allantoinase AllB
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	8	3618456-3618600	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TAAACCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCAT	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|276aa|up_9|NZ_CP051698.1_3609470_3610298_-	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|256aa|up_8|NZ_CP051698.1_3610294_3611062_-	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|321aa|up_7|NZ_CP051698.1_3611074_3612037_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_6|NZ_CP051698.1_3612653_3613325_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_5|NZ_CP051698.1_3613334_3614531_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_4|NZ_CP051698.1_3614508_3615090_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_3|NZ_CP051698.1_3615091_3615865_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_2|NZ_CP051698.1_3616050_3616326_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_1|NZ_CP051698.1_3616360_3617470_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_0|NZ_CP051698.1_3617562_3618396_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|down_0|NZ_CP051698.1_3618621_3619161_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|338aa|down_1|NZ_CP051698.1_3620650_3621664_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_2|NZ_CP051698.1_3621660_3622611_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_3|NZ_CP051698.1_3622607_3623417_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_4|NZ_CP051698.1_3623426_3624293_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_5|NZ_CP051698.1_3624310_3625255_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_6|NZ_CP051698.1_3625256_3626921_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_7|NZ_CP051698.1_3626997_3627945_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_8|NZ_CP051698.1_3628021_3629104_+	PRK09526, lacI, lac repressor; Reviewed	NA|1024aa|down_9|NZ_CP051698.1_3629226_3632298_+	PRK09525, lacZ, beta-galactosidase
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	9	3887469-3887608	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGTGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|473aa|up_6|NZ_CP051698.1_3878838_3880257_+,NA|354aa|down_5|NZ_CP051698.1_3895413_3896475_-	NA|238aa|up_9|NZ_CP051698.1_3876741_3877455_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP051698.1_3877525_3878119_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP051698.1_3878263_3878716_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|473aa|up_6|NZ_CP051698.1_3878838_3880257_+	NA	NA|335aa|up_5|NZ_CP051698.1_3880492_3881497_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP051698.1_3881658_3882075_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP051698.1_3882120_3882624_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP051698.1_3882816_3884013_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP051698.1_3884068_3886924_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP051698.1_3886923_3887367_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP051698.1_3887624_3889136_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP051698.1_3889402_3890503_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP051698.1_3890502_3891585_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP051698.1_3891703_3893206_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP051698.1_3893335_3894355_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|354aa|down_5|NZ_CP051698.1_3895413_3896475_-	NA	NA|380aa|down_6|NZ_CP051698.1_3896425_3897565_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|291aa|down_7|NZ_CP051698.1_3898498_3899371_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|217aa|down_8|NZ_CP051698.1_3899507_3900158_+	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|327aa|down_9|NZ_CP051698.1_3900165_3901146_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase
GCF_012934675.1_ASM1293467v1	NZ_CP051698	Escherichia coli strain SCU-152 chromosome, complete genome	10	4047453-4047584	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|274aa|up_9|NZ_CP051698.1_4033644_4034466_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_CP051698.1_4034921_4036070_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NZ_CP051698.1_4036087_4039309_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_CP051698.1_4039569_4039965_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_CP051698.1_4040050_4040641_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_CP051698.1_4040646_4041432_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_CP051698.1_4041540_4043094_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_CP051698.1_4043167_4044385_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP051698.1_4044513_4045656_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP051698.1_4045686_4047201_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP051698.1_4047674_4048445_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP051698.1_4048459_4049401_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP051698.1_4049451_4050738_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP051698.1_4050734_4051022_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_CP051698.1_4051080_4052412_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_CP051698.1_4052519_4053050_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_CP051698.1_4053042_4054905_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_CP051698.1_4055096_4055576_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|down_8|NZ_CP051698.1_4055653_4056496_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_9|NZ_CP051698.1_4056502_4056880_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
