assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	1	529663-529812	1	CRISPRCasFinder	no		DEDDh,cas14j,DinG,WYL,cas3,csa3	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA|585aa|up_6|NZ_CP051688.1_520810_522565_+,NA	NA|238aa|up_9|NZ_CP051688.1_518713_519427_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP051688.1_519497_520091_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP051688.1_520235_520688_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|585aa|up_6|NZ_CP051688.1_520810_522565_+	NA	NA|335aa|up_5|NZ_CP051688.1_522620_523625_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP051688.1_523786_524203_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP051688.1_524248_524752_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP051688.1_524944_526141_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP051688.1_526196_529052_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP051688.1_529051_529495_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP051688.1_529848_531360_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP051688.1_531626_532727_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP051688.1_532726_533809_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP051688.1_533969_535472_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP051688.1_535549_536548_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP051688.1_536614_537934_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP051688.1_537998_538763_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP051688.1_538786_539818_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP051688.1_540034_540598_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP051688.1_540601_541621_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	2	1695474-1695621	2	CRISPRCasFinder	no		DEDDh,cas14j,DinG,WYL,cas3,csa3	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA,NA	NA|551aa|up_9|NZ_CP051688.1_1682056_1683709_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP051688.1_1683852_1684752_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP051688.1_1685072_1685768_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP051688.1_1686193_1687852_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_5|NZ_CP051688.1_1687848_1688799_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP051688.1_1688955_1690071_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP051688.1_1690067_1692014_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP051688.1_1692086_1692311_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP051688.1_1692633_1692954_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP051688.1_1692984_1695261_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP051688.1_1696004_1696223_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP051688.1_1696507_1697212_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP051688.1_1697253_1698975_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP051688.1_1698975_1700742_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP051688.1_1700864_1701830_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP051688.1_1702373_1702868_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_CP051688.1_1703002_1706992_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP051688.1_1707150_1707762_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP051688.1_1707772_1709116_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP051688.1_1709206_1710499_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	3	2227584-2227707	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas14j,DinG,WYL,cas3,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA,NA|30aa|down_7|NZ_CP051688.1_2236604_2236694_+	NA|471aa|up_9|NZ_CP051688.1_2217036_2218449_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051688.1_2219005_2219215_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051688.1_2219670_2220297_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051688.1_2220317_2222420_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051688.1_2222432_2223071_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051688.1_2223134_2223803_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051688.1_2223799_2224585_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051688.1_2224588_2225401_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051688.1_2225412_2227017_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051688.1_2227142_2227448_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051688.1_2228022_2229279_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051688.1_2229319_2230693_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051688.1_2230907_2231549_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051688.1_2231588_2232737_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051688.1_2233027_2234239_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051688.1_2234351_2235284_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051688.1_2235280_2236306_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051688.1_2236604_2236694_+	NA	NA|390aa|down_8|NZ_CP051688.1_2236859_2238029_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051688.1_2238174_2238756_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	4	3366767-3366880	4	CRISPRCasFinder	no		DEDDh,cas14j,DinG,WYL,cas3,csa3	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA,NA	NA|395aa|up_9|NZ_CP051688.1_3345669_3346854_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP051688.1_3346927_3347704_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP051688.1_3347708_3349358_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP051688.1_3349358_3353753_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP051688.1_3353896_3354520_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP051688.1_3354516_3356205_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP051688.1_3356353_3358981_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP051688.1_3359127_3359850_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_CP051688.1_3359989_3363748_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP051688.1_3364429_3366715_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP051688.1_3366904_3368035_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP051688.1_3368034_3368289_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP051688.1_3368342_3368993_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP051688.1_3369195_3370272_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP051688.1_3370276_3371635_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP051688.1_3371907_3373536_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP051688.1_3373525_3374785_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP051688.1_3374781_3375972_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|304aa|down_8|NZ_CP051688.1_3376164_3377076_+	PRK09956, PRK09956, ISNCY family transposase	NA|74aa|down_9|NZ_CP051688.1_3377088_3377310_+	PRK09956, PRK09956, ISNCY family transposase
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	5	4255433-4255541	5	CRISPRCasFinder	no		DEDDh,cas14j,DinG,WYL,cas3,csa3	Orphan	TATGCAATTGTTTTAAAATCTGTTCTTT	28	1	1	4255461-4255513	NZ_CP051688.1_4255544-4255596	NA	1	1	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA|52aa|up_7|NZ_CP051688.1_4241769_4241925_+,NA	NA|282aa|up_9|NZ_CP051688.1_4239102_4239948_+	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|132aa|up_8|NZ_CP051688.1_4240016_4240412_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|52aa|up_7|NZ_CP051688.1_4241769_4241925_+	NA	NA|328aa|up_6|NZ_CP051688.1_4242735_4243719_+	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein	NA|383aa|up_5|NZ_CP051688.1_4243790_4244939_+	TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	NA|559aa|up_4|NZ_CP051688.1_4244962_4246639_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|247aa|up_3|NZ_CP051688.1_4246648_4247389_+	PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|676aa|up_2|NZ_CP051688.1_4247385_4249413_+	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]	NA|390aa|up_1|NZ_CP051688.1_4249447_4250617_+	cd16441, beta_Kdo_transferase_KpsS, beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS	NA|393aa|up_0|NZ_CP051688.1_4250955_4252134_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|239aa|down_0|NZ_CP051688.1_4257135_4257852_-	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase	NA|225aa|down_1|NZ_CP051688.1_4258836_4259511_-	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|259aa|down_2|NZ_CP051688.1_4259507_4260284_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|179aa|down_3|NZ_CP051688.1_4261341_4261878_-	PRK09731, PRK09731, type II secretion system protein	NA|393aa|down_4|NZ_CP051688.1_4261879_4263058_-	PRK09662, PRK09662, GspL-like protein; Provisional	NA|326aa|down_5|NZ_CP051688.1_4263054_4264032_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|202aa|down_6|NZ_CP051688.1_4264028_4264634_-	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J	NA|124aa|down_7|NZ_CP051688.1_4264630_4265002_-	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|188aa|down_8|NZ_CP051688.1_4264998_4265562_-	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|152aa|down_9|NZ_CP051688.1_4265565_4266021_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G
GCF_012934765.1_ASM1293476v1	NZ_CP051688	Escherichia coli strain SCU-387 chromosome, complete genome	6	5246264-5246396	6	CRISPRCasFinder	no		DEDDh,cas14j,DinG,WYL,cas3,csa3	Orphan	ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,WYL,cas3,csa3	NA,NA	NA|252aa|up_9|NZ_CP051688.1_5237789_5238545_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP051688.1_5238558_5239164_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP051688.1_5239160_5240801_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP051688.1_5240879_5241149_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP051688.1_5241152_5241668_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP051688.1_5241670_5242447_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP051688.1_5242488_5243271_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP051688.1_5243267_5243756_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP051688.1_5243922_5245416_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP051688.1_5245461_5246163_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP051688.1_5246434_5247598_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP051688.1_5247607_5249797_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP051688.1_5249986_5251318_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP051688.1_5251317_5251932_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP051688.1_5251970_5253422_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP051688.1_5253433_5253979_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP051688.1_5259562_5260090_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP051688.1_5260071_5260656_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP051688.1_5260725_5260995_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP051688.1_5261071_5262058_+	PRK11768, PRK11768, serine/threonine protein kinase
