assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012935755.1_ASM1293575v1	NZ_CP052862	Pseudomonas sp. ADAK2 chromosome, complete genome	1	1200065-1200165	1	CRISPRCasFinder	no	WYL	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	Unclear	TGTAGCAGCTGCCGACGCACGAGGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	NA,NA|351aa|down_1|NZ_CP052862.1_1200958_1202011_-	NA|114aa|up_9|NZ_CP052862.1_1187868_1188210_-	pfam12680, SnoaL_2, SnoaL-like domain	WYL|239aa|up_8|NZ_CP052862.1_1188262_1188979_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|351aa|up_7|NZ_CP052862.1_1189169_1190222_+	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR)	NA|320aa|up_6|NZ_CP052862.1_1190355_1191315_-	PRK02190, PRK02190, agmatinase; Provisional	NA|364aa|up_5|NZ_CP052862.1_1191328_1192420_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|298aa|up_4|NZ_CP052862.1_1192521_1193415_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|483aa|up_3|NZ_CP052862.1_1193609_1195058_+	TIGR03173, pbuX, xanthine permease	NA|219aa|up_2|NZ_CP052862.1_1195111_1195768_+	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain	NA|1189aa|up_1|NZ_CP052862.1_1195831_1199398_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|159aa|up_0|NZ_CP052862.1_1199408_1199885_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|161aa|down_0|NZ_CP052862.1_1200311_1200794_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|351aa|down_1|NZ_CP052862.1_1200958_1202011_-	NA	NA|383aa|down_2|NZ_CP052862.1_1202323_1203472_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|269aa|down_3|NZ_CP052862.1_1203468_1204275_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|251aa|down_4|NZ_CP052862.1_1204293_1205046_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|211aa|down_5|NZ_CP052862.1_1205058_1205691_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|437aa|down_6|NZ_CP052862.1_1206095_1207406_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|360aa|down_7|NZ_CP052862.1_1207504_1208584_+	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]	NA|158aa|down_8|NZ_CP052862.1_1208711_1209185_+	smart00769, WHy, Water Stress and Hypersensitive response	NA|184aa|down_9|NZ_CP052862.1_1209237_1209789_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain
GCF_012935755.1_ASM1293575v1	NZ_CP052862	Pseudomonas sp. ADAK2 chromosome, complete genome	2	3366243-3366345	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	Orphan	CGTTCCCACGCGGAGCGTGGGAA	23	1	2	3366266-3366322|3366266-3366322	NZ_CP052862.1_1033301-1033357|NZ_CP052862.1_5832615-5832559	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	NA,NA|137aa|down_4|NZ_CP052862.1_3371763_3372174_+	NA|428aa|up_9|NZ_CP052862.1_3355743_3357027_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|321aa|up_8|NZ_CP052862.1_3357086_3358049_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|254aa|up_7|NZ_CP052862.1_3358364_3359126_+	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|400aa|up_6|NZ_CP052862.1_3359155_3360355_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|368aa|up_5|NZ_CP052862.1_3360470_3361574_-	cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 5	NA|161aa|up_4|NZ_CP052862.1_3361760_3362243_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|162aa|up_3|NZ_CP052862.1_3362366_3362852_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|113aa|up_2|NZ_CP052862.1_3362820_3363159_+	pfam12088, DUF3565, Protein of unknown function (DUF3565)	NA|700aa|up_1|NZ_CP052862.1_3363219_3365319_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|301aa|up_0|NZ_CP052862.1_3365319_3366222_+	PRK14014, PRK14014, putative acyltransferase; Provisional	NA|633aa|down_0|NZ_CP052862.1_3366416_3368315_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|306aa|down_1|NZ_CP052862.1_3368324_3369242_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|253aa|down_2|NZ_CP052862.1_3369488_3370247_-	PRK10799, PRK10799, type 2 GTP cyclohydrolase I	NA|385aa|down_3|NZ_CP052862.1_3370349_3371504_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|137aa|down_4|NZ_CP052862.1_3371763_3372174_+	NA	NA|351aa|down_5|NZ_CP052862.1_3372375_3373428_-	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional	NA|442aa|down_6|NZ_CP052862.1_3373430_3374756_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|212aa|down_7|NZ_CP052862.1_3374882_3375518_-	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed	NA|422aa|down_8|NZ_CP052862.1_3375647_3376913_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|80aa|down_9|NZ_CP052862.1_3376935_3377175_-	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]
GCF_012935755.1_ASM1293575v1	NZ_CP052862	Pseudomonas sp. ADAK2 chromosome, complete genome	3	4202017-4202110	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	Orphan	GAGGCATTCCCACGCGGAGCGTGGGAACGATCA	33	1	12	4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077|4202050-4202077	NZ_CP052862.1_3315805-3315778|NZ_CP052862.1_5271929-5271902|NZ_CP052862.1_2304259-2304286|NZ_CP052862.1_4453089-4453116|NZ_CP052862.1_4780461-4780488|NZ_CP052862.1_5969931-5969958|NZ_CP052862.1_4061779-4061752|NZ_CP052862.1_5950464-5950437|NZ_CP052862.1_6148758-6148731|NZ_CP052862.1_3932137-3932164|NZ_CP052862.1_5882159-5882186|NZ_CP052862.1_5976117-5976144	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	NA|115aa|up_9|NZ_CP052862.1_4190069_4190414_+,NA|109aa|down_6|NZ_CP052862.1_4207408_4207735_-	NA|115aa|up_9|NZ_CP052862.1_4190069_4190414_+	NA	NA|210aa|up_8|NZ_CP052862.1_4190598_4191228_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|1018aa|up_7|NZ_CP052862.1_4191336_4194390_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|up_6|NZ_CP052862.1_4194386_4195454_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|368aa|up_5|NZ_CP052862.1_4195450_4196554_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|387aa|up_4|NZ_CP052862.1_4196856_4198017_+	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|294aa|up_3|NZ_CP052862.1_4198197_4199079_-	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|261aa|up_2|NZ_CP052862.1_4199075_4199858_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|220aa|up_1|NZ_CP052862.1_4199854_4200514_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|222aa|up_0|NZ_CP052862.1_4200494_4201160_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|261aa|down_0|NZ_CP052862.1_4202172_4202955_-	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold	NA|310aa|down_1|NZ_CP052862.1_4203208_4204138_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|194aa|down_2|NZ_CP052862.1_4204191_4204773_-	pfam06821, Ser_hydrolase, Serine hydrolase	NA|134aa|down_3|NZ_CP052862.1_4205062_4205464_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|242aa|down_4|NZ_CP052862.1_4205465_4206191_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|270aa|down_5|NZ_CP052862.1_4206236_4207046_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|109aa|down_6|NZ_CP052862.1_4207408_4207735_-	NA	NA|784aa|down_7|NZ_CP052862.1_4207947_4210299_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|315aa|down_8|NZ_CP052862.1_4210464_4211409_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|539aa|down_9|NZ_CP052862.1_4211560_4213177_+	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase
GCF_012935755.1_ASM1293575v1	NZ_CP052862	Pseudomonas sp. ADAK2 chromosome, complete genome	4	5830417-5830519	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	Orphan	CGTTCCCACGCTCCGCGTGGGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	NA,NA|163aa|down_4|NZ_CP052862.1_5834556_5835045_-,NA|52aa|down_7|NZ_CP052862.1_5836311_5836467_+,NA|132aa|down_8|NZ_CP052862.1_5836463_5836859_-	NA|490aa|up_9|NZ_CP052862.1_5813172_5814642_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|526aa|up_8|NZ_CP052862.1_5814741_5816319_+	PRK00074, guaA, GMP synthase; Reviewed	NA|691aa|up_7|NZ_CP052862.1_5816494_5818567_-	cd06974, TerD_like, Uncharacterized proteins involved in stress response, similar to tellurium resistance terD	NA|912aa|up_6|NZ_CP052862.1_5819333_5822069_+	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|235aa|up_5|NZ_CP052862.1_5822150_5822855_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|481aa|up_4|NZ_CP052862.1_5823091_5824534_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|550aa|up_3|NZ_CP052862.1_5824568_5826218_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|408aa|up_2|NZ_CP052862.1_5826313_5827537_+	pfam02264, LamB, LamB porin	NA|841aa|up_1|NZ_CP052862.1_5827599_5830122_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|97aa|up_0|NZ_CP052862.1_5830124_5830415_+	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component	NA|459aa|down_0|NZ_CP052862.1_5830660_5832037_+	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|164aa|down_1|NZ_CP052862.1_5832036_5832528_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|319aa|down_2|NZ_CP052862.1_5832651_5833608_-	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|248aa|down_3|NZ_CP052862.1_5833604_5834348_-	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase	NA|163aa|down_4|NZ_CP052862.1_5834556_5835045_-	NA	NA|216aa|down_5|NZ_CP052862.1_5835189_5835837_-	pfam07947, YhhN, YhhN family	NA|131aa|down_6|NZ_CP052862.1_5835839_5836232_-	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42	NA|52aa|down_7|NZ_CP052862.1_5836311_5836467_+	NA	NA|132aa|down_8|NZ_CP052862.1_5836463_5836859_-	NA	NA|806aa|down_9|NZ_CP052862.1_5837042_5839460_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
GCF_012935755.1_ASM1293575v1	NZ_CP052862	Pseudomonas sp. ADAK2 chromosome, complete genome	5	6879014-6879111	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	Orphan	CGTTCCCACGCGGAGCGTGGGAA	23	1	7	6879037-6879088|6879037-6879088|6879037-6879088|6879037-6879088|6879037-6879088|6879037-6879088|6879037-6879088	NZ_CP052862.1_290764-290713|NZ_CP052862.1_2861433-2861382|NZ_CP052862.1_2352894-2352945|NZ_CP052862.1_4052302-4052251|NZ_CP052862.1_6084190-6084241|NZ_CP052862.1_1193508-1193457|NZ_CP052862.1_6085913-6085964	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,RT,cas3,PD-DExK	NA,NA	NA|624aa|up_9|NZ_CP052862.1_6866303_6868175_+	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|275aa|up_8|NZ_CP052862.1_6868402_6869227_+	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|346aa|up_7|NZ_CP052862.1_6869576_6870614_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|377aa|up_6|NZ_CP052862.1_6870617_6871748_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|680aa|up_5|NZ_CP052862.1_6871958_6873998_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|305aa|up_4|NZ_CP052862.1_6874250_6875165_+	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]	NA|183aa|up_3|NZ_CP052862.1_6875186_6875735_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|276aa|up_2|NZ_CP052862.1_6875973_6876801_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|370aa|up_1|NZ_CP052862.1_6876924_6878034_-	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|288aa|up_0|NZ_CP052862.1_6878143_6879007_+	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|292aa|down_0|NZ_CP052862.1_6879114_6879990_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|442aa|down_1|NZ_CP052862.1_6880258_6881584_+	COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]	NA|464aa|down_2|NZ_CP052862.1_6881594_6882986_+	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|465aa|down_3|NZ_CP052862.1_6883036_6884431_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|236aa|down_4|NZ_CP052862.1_6884663_6885371_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|442aa|down_5|NZ_CP052862.1_6885455_6886781_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|371aa|down_6|NZ_CP052862.1_6886866_6887979_-	pfam03969, AFG1_ATPase, AFG1-like ATPase	NA|349aa|down_7|NZ_CP052862.1_6888256_6889303_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|372aa|down_8|NZ_CP052862.1_6889321_6890437_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|452aa|down_9|NZ_CP052862.1_6890433_6891789_-	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form
