assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012955485.1_ASM1295548v1	NZ_CP052065	Lactobacillus paracasei strain 347-16 chromosome, complete genome	1	755346-755476	1	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1	Orphan	CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,PrimPol	NA|48aa|up_0|NZ_CP052065.1_755041_755185_+,NA|78aa|down_1|NZ_CP052065.1_756402_756636_-,NA|60aa|down_5|NZ_CP052065.1_759732_759912_+,NA|175aa|down_6|NZ_CP052065.1_759989_760514_+,NA|354aa|down_9|NZ_CP052065.1_762446_763508_-	NA|227aa|up_9|NZ_CP052065.1_744997_745678_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP052065.1_745699_746638_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP052065.1_746752_747754_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP052065.1_747792_748311_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP052065.1_748355_748784_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP052065.1_748788_749565_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP052065.1_750009_750636_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP052065.1_750696_751818_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP052065.1_751817_754943_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP052065.1_755041_755185_+	NA	NA|159aa|down_0|NZ_CP052065.1_755932_756409_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP052065.1_756402_756636_-	NA	NA|368aa|down_2|NZ_CP052065.1_756965_758069_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP052065.1_758279_759065_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP052065.1_759067_759736_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP052065.1_759732_759912_+	NA	NA|175aa|down_6|NZ_CP052065.1_759989_760514_+	NA	NA|211aa|down_7|NZ_CP052065.1_760747_761380_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP052065.1_761451_762273_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP052065.1_762446_763508_-	NA
GCF_012955485.1_ASM1295548v1	NZ_CP052065	Lactobacillus paracasei strain 347-16 chromosome, complete genome	2	1994197-1994314	2	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,PrimPol	NA|73aa|up_6|NZ_CP052065.1_1986195_1986414_-,NA|125aa|down_1|NZ_CP052065.1_1997217_1997592_-,NA|141aa|down_2|NZ_CP052065.1_1997731_1998154_-,NA|56aa|down_7|NZ_CP052065.1_2003856_2004024_-	NA|276aa|up_9|NZ_CP052065.1_1982613_1983441_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_8|NZ_CP052065.1_1983443_1984637_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|489aa|up_7|NZ_CP052065.1_1984640_1986107_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|73aa|up_6|NZ_CP052065.1_1986195_1986414_-	NA	NA|234aa|up_5|NZ_CP052065.1_1986549_1987251_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_CP052065.1_1987275_1988421_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_CP052065.1_1988527_1989325_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_CP052065.1_1989337_1991314_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP052065.1_1991642_1992470_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP052065.1_1992531_1993998_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP052065.1_1994473_1996792_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP052065.1_1997217_1997592_-	NA	NA|141aa|down_2|NZ_CP052065.1_1997731_1998154_-	NA	NA|457aa|down_3|NZ_CP052065.1_1998776_2000147_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|379aa|down_4|NZ_CP052065.1_2000241_2001378_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_5|NZ_CP052065.1_2001486_2001804_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_6|NZ_CP052065.1_2001974_2003642_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_7|NZ_CP052065.1_2003856_2004024_-	NA	NA|704aa|down_8|NZ_CP052065.1_2004059_2006171_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|164aa|down_9|NZ_CP052065.1_2006157_2006649_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]
GCF_012955485.1_ASM1295548v1	NZ_CP052065	Lactobacillus paracasei strain 347-16 chromosome, complete genome	3	2343223-2345898	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1	Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	40,40,28	40	TypeII-A	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,PrimPol	NA|50aa|up_8|NZ_CP052065.1_2331996_2332146_-,NA|367aa|up_0|NZ_CP052065.1_2341841_2342942_-,NA|265aa|down_3|NZ_CP052065.1_2352210_2353005_-,NA|389aa|down_4|NZ_CP052065.1_2353005_2354172_-,NA|108aa|down_6|NZ_CP052065.1_2354838_2355162_+	NA|473aa|up_9|NZ_CP052065.1_2330442_2331861_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|50aa|up_8|NZ_CP052065.1_2331996_2332146_-	NA	NA|189aa|up_7|NZ_CP052065.1_2332151_2332718_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP052065.1_2332844_2334293_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP052065.1_2334463_2336302_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP052065.1_2336753_2337611_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP052065.1_2337748_2339380_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP052065.1_2339376_2341068_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP052065.1_2341264_2341690_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP052065.1_2341841_2342942_-	NA	csn2|226aa|down_0|NZ_CP052065.1_2345922_2346600_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP052065.1_2346596_2346902_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP052065.1_2346879_2347785_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|265aa|down_3|NZ_CP052065.1_2352210_2353005_-	NA	NA|389aa|down_4|NZ_CP052065.1_2353005_2354172_-	NA	NA|125aa|down_5|NZ_CP052065.1_2354395_2354770_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_6|NZ_CP052065.1_2354838_2355162_+	NA	NA|576aa|down_7|NZ_CP052065.1_2355233_2356961_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_8|NZ_CP052065.1_2356941_2358684_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_9|NZ_CP052065.1_2358680_2359694_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II
