The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019930	Bordetella avium strain Ba002 chromosome, complete genome	3691350	417206	437440	3691350	tail,protease,head,terminase	Bordetella_phage(73.68%)	21	NA	NA
WP_169512549.1|417206_418019_+	YdaU family protein	NA	A0A2I7RHJ6	Vibrio_phage	47.7	8.2e-19
WP_039052172.1|418005_418704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039052171.1|418700_419072_+	endonuclease	NA	NA	NA	NA	NA
WP_169512550.1|419232_419499_+	hypothetical protein	NA	Q775B7	Bordetella_phage	84.2	1.2e-27
WP_041937482.1|419517_420093_+	hypothetical protein	NA	Q775B8	Bordetella_phage	85.0	9.4e-78
WP_041937541.1|420098_421631_+|terminase	terminase	terminase	Q775B9	Bordetella_phage	75.8	6.3e-238
WP_041937483.1|421674_422139_+	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	93.5	8.7e-74
WP_012416114.1|422135_422594_+	hypothetical protein	NA	Q775C1	Bordetella_phage	90.8	4.9e-69
WP_041937484.1|422976_424644_+|head,tail	phage head-tail connector protein	head,tail	T1S9Z7	Salmonella_phage	46.0	1.1e-134
WP_012416117.1|424730_425078_+	hypothetical protein	NA	Q775C5	Bordetella_phage	89.6	3.1e-52
WP_039052163.1|425052_425727_+|protease	protease	protease	Q775C6	Bordetella_phage	85.7	9.7e-90
WP_039052162.1|425740_426736_+	phage protein	NA	Q775C7	Bordetella_phage	97.6	4.5e-184
WP_012416120.1|426754_427177_+	hypothetical protein	NA	Q775C8	Bordetella_phage	82.1	3.3e-56
WP_039052161.1|427189_427390_+	hypothetical protein	NA	Q775C9	Bordetella_phage	80.9	3.5e-24
WP_012416122.1|427464_428136_+	hypothetical protein	NA	Q775D0	Bordetella_phage	93.2	2.1e-116
WP_039052159.1|428135_430181_+	phage protein	NA	Q775D1	Bordetella_phage	93.8	0.0e+00
WP_039052158.1|430192_430786_+	phage protein	NA	Q775D2	Bordetella_phage	47.0	4.2e-20
WP_152609399.1|430797_432393_+	hypothetical protein	NA	W6MYA2	Pseudomonas_phage	29.0	5.6e-19
WP_169512551.1|432379_435769_+	hypothetical protein	NA	M1IDU6	Pelagibacter_phage	24.1	2.1e-52
WP_119651456.1|435929_437042_+|tail	phage tail protein	tail	Q775D5	Bordetella_phage	67.3	1.5e-50
WP_119651455.1|437047_437440_+	hypothetical protein	NA	L0MXF6	Edwardsiella_phage	40.3	1.1e-05
>prophage 2
NZ_CP019930	Bordetella avium strain Ba002 chromosome, complete genome	3691350	1438943	1489649	3691350	integrase,tRNA,terminase,portal,tail,protease,head,capsid	Pseudomonas_phage(16.0%)	54	1455125:1455141	1460599:1460615
WP_012417092.1|1438943_1441805_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.4	2.8e-69
WP_039052066.1|1441794_1442760_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_169507411.1|1442658_1443477_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.8	2.8e-27
WP_039052075.1|1443657_1444968_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_039052076.1|1444974_1445250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012417097.1|1445590_1446799_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_012417098.1|1446795_1449048_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	4.5e-107
WP_086935778.1|1449403_1451326_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.7	1.2e-65
WP_012417100.1|1451322_1452213_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_012417101.1|1452219_1453353_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_012417102.1|1453352_1454174_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_012417103.1|1454197_1455388_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
1455125:1455141	attL	CGGTGCCGGGATGCTGT	NA	NA	NA	NA
WP_039052068.1|1455719_1456928_-|integrase	site-specific integrase	integrase	A0A1W6JTA0	Pseudomonas_phage	61.6	6.3e-132
WP_041937512.1|1457713_1458730_-	recombination protein RecT	NA	Q858E1	Salmonella_phage	47.8	2.2e-61
WP_012416092.1|1458741_1459596_-	exonuclease VIII	NA	V5YTC9	Pseudomonas_phage	32.2	2.2e-38
WP_012416093.1|1459599_1459785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012417109.1|1459781_1460069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012416095.1|1460138_1460888_-	hypothetical protein	NA	Q7Y5V4	Haemophilus_phage	43.5	2.9e-34
1460599:1460615	attR	ACAGCATCCCGGCACCG	NA	NA	NA	NA
WP_012416096.1|1461240_1461504_+	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_039052135.1|1461681_1461906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012417110.1|1462457_1463012_-	ead/Ea22-like family protein	NA	NA	NA	NA	NA
WP_012417112.1|1463694_1464057_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012417115.1|1464687_1465128_-	hypothetical protein	NA	C7BGF7	Burkholderia_phage	37.7	8.1e-13
WP_012417116.1|1465171_1465435_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_127812204.1|1465766_1466132_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041937479.1|1466480_1466729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012416105.1|1466958_1467423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417121.1|1467667_1468612_+	YdaU family protein	NA	A0A2H4FS76	Methylophilaceae_phage	41.8	6.4e-15
WP_012417122.1|1468608_1469091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417123.1|1469087_1469741_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	48.7	9.2e-29
WP_012417125.1|1469967_1470339_-	DUF2513 domain-containing protein	NA	Q3HQY9	Burkholderia_phage	58.2	1.2e-33
WP_082011720.1|1470508_1470916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417127.1|1470915_1471317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417129.1|1471604_1472108_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_158308695.1|1472217_1472400_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_082011721.1|1472580_1473552_+	hypothetical protein	NA	A0A2H4JG39	uncultured_Caudovirales_phage	39.3	1.1e-25
WP_012417132.1|1473967_1474246_-	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	57.1	2.9e-08
WP_012417133.1|1474232_1474499_-	BrnT family toxin	NA	NA	NA	NA	NA
WP_012417134.1|1474679_1475063_+	HNH endonuclease	NA	Q8W6N0	Burkholderia_virus	55.6	7.0e-29
WP_012417135.1|1475259_1475742_+|terminase	phage terminase small subunit P27 family	terminase	A4JWZ6	Burkholderia_virus	64.6	2.7e-54
WP_039052220.1|1475745_1477470_+|terminase	terminase large subunit	terminase	A4JWZ7	Burkholderia_virus	80.5	7.0e-278
WP_012417137.1|1477471_1477627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417138.1|1477623_1478856_+|portal	phage portal protein	portal	A0A1J0GUY8	Halomonas_phage	66.8	1.2e-154
WP_012417139.1|1478864_1479482_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1J0GUZ0	Halomonas_phage	61.8	5.1e-61
WP_012417140.1|1479494_1480718_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	59.3	3.6e-135
WP_039052222.1|1480755_1481076_+|head,tail	phage head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	36.5	3.8e-12
WP_012417142.1|1481086_1481425_+|head	phage head closure protein	head	Q3HQT3	Burkholderia_phage	39.3	9.3e-09
WP_012417143.1|1481421_1481916_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_012417144.1|1481908_1482259_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_039052219.1|1482258_1482699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012417146.1|1482770_1483418_+|tail	phage tail protein	tail	A0A0H5BBY3	Pseudomonas_phage	52.1	3.9e-56
WP_012417147.1|1483451_1483769_+	hypothetical protein	NA	A0A0S2SYT8	Pseudomonas_phage	48.6	5.6e-24
WP_119649675.1|1483831_1484077_+	DUF1799 domain-containing protein	NA	NA	NA	NA	NA
WP_041937514.1|1484111_1489649_+|tail	tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	34.0	8.8e-72
>prophage 3
NZ_CP019930	Bordetella avium strain Ba002 chromosome, complete genome	3691350	2078359	2089393	3691350	tRNA	uncultured_Mediterranean_phage(25.0%)	12	NA	NA
WP_012417642.1|2078359_2079790_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.4	1.4e-29
WP_012417643.1|2079902_2080451_-	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_012417644.1|2080554_2081334_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_012417645.1|2081330_2082182_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	40.3	9.2e-13
WP_012417646.1|2082199_2082994_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.7	1.3e-32
WP_012417647.1|2082978_2083737_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	6.2e-69
WP_012417648.1|2083906_2084545_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012417649.1|2084697_2085735_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	52.9	4.5e-94
WP_169512567.1|2085833_2087126_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.3	7.6e-67
WP_012417651.1|2087279_2088293_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012417652.1|2088404_2088788_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	28.6	1.0e-11
WP_012417653.1|2088790_2089393_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.6	7.4e-17
