assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012974825.1_ASM1297482v1	NZ_CP038229	Staphylococcus aureus strain MJ163 chromosome, complete genome	1	246562-246652	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	18	246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619|246595-246619	NZ_CP038229.1_2463838-2463814|NZ_CP038229.1_140936-140912|NZ_CP038229.1_140994-140970|NZ_CP038229.1_342621-342597|NZ_CP038229.1_1352799-1352775|NZ_CP038229.1_1748900-1748876|NZ_CP038229.1_782537-782561|NZ_CP038229.1_787974-787998|NZ_CP038229.1_1067320-1067344|NZ_CP038229.1_1446768-1446792|NZ_CP038229.1_1446826-1446850|NZ_CP038229.1_1960400-1960424|NZ_CP038229.1_796586-796610|NZ_CP038229.1_796704-796728|NZ_CP038229.1_944690-944714|NZ_CP038229.1_1357209-1357233|NZ_CP038229.1_1405092-1405116|NZ_CP038229.1_1661193-1661217	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|49aa|up_4|NZ_CP038229.1_241067_241214_+,NA	NA|699aa|up_9|NZ_CP038229.1_235657_237754_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|156aa|up_8|NZ_CP038229.1_237738_238206_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_7|NZ_CP038229.1_238228_238507_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_6|NZ_CP038229.1_238733_239993_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_5|NZ_CP038229.1_240010_241066_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_4|NZ_CP038229.1_241067_241214_+	NA	NA|348aa|up_3|NZ_CP038229.1_241237_242281_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_2|NZ_CP038229.1_242808_243525_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_1|NZ_CP038229.1_243517_244543_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|565aa|up_0|NZ_CP038229.1_244564_246259_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|390aa|down_0|NZ_CP038229.1_247073_248243_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|239aa|down_1|NZ_CP038229.1_248518_249235_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|down_2|NZ_CP038229.1_249227_250253_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|down_3|NZ_CP038229.1_250274_251963_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|down_4|NZ_CP038229.1_251995_253717_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|down_5|NZ_CP038229.1_253860_254535_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|down_6|NZ_CP038229.1_254779_256534_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|down_7|NZ_CP038229.1_256536_257277_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|down_8|NZ_CP038229.1_257389_257833_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_9|NZ_CP038229.1_257825_258527_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional
GCF_012974825.1_ASM1297482v1	NZ_CP038229	Staphylococcus aureus strain MJ163 chromosome, complete genome	2	1916091-1916173	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	AATTTCTACAGACATTGCAAGTTGGGG	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|33aa|up_8|NZ_CP038229.1_1907440_1907539_-,NA|132aa|up_0|NZ_CP038229.1_1915353_1915749_-,NA|51aa|down_0|NZ_CP038229.1_1916351_1916504_-	NA|399aa|up_9|NZ_CP038229.1_1905953_1907150_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|33aa|up_8|NZ_CP038229.1_1907440_1907539_-	NA	NA|115aa|up_7|NZ_CP038229.1_1908032_1908377_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|NZ_CP038229.1_1908445_1909570_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|NZ_CP038229.1_1909748_1910213_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|NZ_CP038229.1_1910568_1911192_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|NZ_CP038229.1_1911213_1912326_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|NZ_CP038229.1_1912488_1913310_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|NZ_CP038229.1_1913772_1915158_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|NZ_CP038229.1_1915353_1915749_-	NA	NA|51aa|down_0|NZ_CP038229.1_1916351_1916504_-	NA	NA|200aa|down_1|NZ_CP038229.1_1916528_1917128_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|NZ_CP038229.1_1917286_1917757_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|down_3|NZ_CP038229.1_1917761_1918889_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|down_4|NZ_CP038229.1_1919039_1919762_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|NZ_CP038229.1_1919754_1921212_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|NZ_CP038229.1_1921469_1922531_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|440aa|down_7|NZ_CP038229.1_1923023_1924343_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|down_8|NZ_CP038229.1_1932921_1933368_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_9|NZ_CP038229.1_1933464_1934415_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family
GCF_012974825.1_ASM1297482v1	NZ_CP038229	Staphylococcus aureus strain MJ163 chromosome, complete genome	3	2160645-2160730	3	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|364aa|up_9|NZ_CP038229.1_2147149_2148241_+,NA|35aa|up_8|NZ_CP038229.1_2148739_2148844_-,NA|53aa|up_7|NZ_CP038229.1_2149523_2149682_+,NA	NA|364aa|up_9|NZ_CP038229.1_2147149_2148241_+	NA	NA|35aa|up_8|NZ_CP038229.1_2148739_2148844_-	NA	NA|53aa|up_7|NZ_CP038229.1_2149523_2149682_+	NA	NA|286aa|up_6|NZ_CP038229.1_2150340_2151198_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP038229.1_2151264_2152047_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP038229.1_2152278_2154084_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP038229.1_2154764_2156303_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP038229.1_2156337_2158470_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP038229.1_2158481_2158916_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP038229.1_2158915_2160022_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP038229.1_2168114_2169470_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP038229.1_2169496_2170429_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP038229.1_2170430_2171240_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP038229.1_2171428_2172337_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP038229.1_2178654_2179719_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP038229.1_2179866_2181309_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP038229.1_2181631_2182105_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP038229.1_2182203_2183547_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP038229.1_2183725_2184409_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP038229.1_2184427_2185615_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
