assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012980825.1_ASM1298082v1	NZ_CP050244	Erwinia amylovora strain TS3238 chromosome, complete genome	1	851553-853716	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTGTTCCCCGCGTGAGCGGGGATAAACCG,GTGTTCCCCGCGTGAGCGGGGATAAACCG,GTGTTCCCCGCGTGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	34,35,35	35	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|476aa|up_9|NZ_CP050244.1_841998_843426_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|234aa|up_8|NZ_CP050244.1_843533_844235_+	pfam00106, adh_short, short chain dehydrogenase	NA|225aa|up_7|NZ_CP050244.1_844248_844923_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|206aa|up_6|NZ_CP050244.1_844919_845537_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|204aa|up_5|NZ_CP050244.1_845475_846087_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|329aa|up_4|NZ_CP050244.1_846127_847114_-	cd05282, ETR_like, 2-enoyl thioester reductase-like	NA|145aa|up_3|NZ_CP050244.1_847160_847595_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|500aa|up_2|NZ_CP050244.1_847594_849094_+	PRK07638, PRK07638, acyl-CoA synthetase; Validated	NA|402aa|up_1|NZ_CP050244.1_849056_850262_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|261aa|up_0|NZ_CP050244.1_850263_851046_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|187aa|down_0|NZ_CP050244.1_853717_854278_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|down_1|NZ_CP050244.1_854355_855159_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|270aa|down_2|NZ_CP050244.1_855211_856021_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	cas3|878aa|down_3|NZ_CP050244.1_856334_858968_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_4|NZ_CP050244.1_858964_860488_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|157aa|down_5|NZ_CP050244.1_860471_860942_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|365aa|down_6|NZ_CP050244.1_860938_862033_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|219aa|down_7|NZ_CP050244.1_862035_862692_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|201aa|down_8|NZ_CP050244.1_862688_863291_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|down_9|NZ_CP050244.1_863330_864248_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
GCF_012980825.1_ASM1298082v1	NZ_CP050244	Erwinia amylovora strain TS3238 chromosome, complete genome	2	864623-866606	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTGTTCCCCGCGTATGCGGGGATAAACCG,GTGTTCCCCGCGTATGCGGGGATAAACCG,GTGTTCCCCGCGTATGCGGGGATAAACCG	29,29,29	1	1	865385-865416	NZ_CP050244.1_1379405-1379436	I-E:I-E:I-E	31,32,32	32	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|157aa|down_0|NZ_CP050244.1_866772_867243_-,NA|63aa|down_9|NZ_CP050244.1_877873_878062_+	NA|268aa|up_9|NZ_CP050244.1_854355_855159_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|270aa|up_8|NZ_CP050244.1_855211_856021_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	cas3|878aa|up_7|NZ_CP050244.1_856334_858968_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP050244.1_858964_860488_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|157aa|up_5|NZ_CP050244.1_860471_860942_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|365aa|up_4|NZ_CP050244.1_860938_862033_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|219aa|up_3|NZ_CP050244.1_862035_862692_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|201aa|up_2|NZ_CP050244.1_862688_863291_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP050244.1_863330_864248_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP050244.1_864249_864534_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|157aa|down_0|NZ_CP050244.1_866772_867243_-	NA	NA|250aa|down_1|NZ_CP050244.1_867239_867989_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|866aa|down_2|NZ_CP050244.1_868746_871344_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|down_3|NZ_CP050244.1_871515_871878_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|268aa|down_4|NZ_CP050244.1_871965_872769_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|286aa|down_5|NZ_CP050244.1_872790_873648_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|down_6|NZ_CP050244.1_873748_874096_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|537aa|down_7|NZ_CP050244.1_874276_875887_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|226aa|down_8|NZ_CP050244.1_877132_877810_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|63aa|down_9|NZ_CP050244.1_877873_878062_+	NA
GCF_012980825.1_ASM1298082v1	NZ_CP050244	Erwinia amylovora strain TS3238 chromosome, complete genome	3	876070-876398	3,3	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGNTTAGANA	28,28	0	0	NA	NA	I-F:I-F	5,5	5	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|157aa|up_7|NZ_CP050244.1_866772_867243_-,NA|63aa|down_1|NZ_CP050244.1_877873_878062_+	cas1|306aa|up_9|NZ_CP050244.1_863330_864248_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_8|NZ_CP050244.1_864249_864534_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|157aa|up_7|NZ_CP050244.1_866772_867243_-	NA	NA|250aa|up_6|NZ_CP050244.1_867239_867989_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|866aa|up_5|NZ_CP050244.1_868746_871344_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|up_4|NZ_CP050244.1_871515_871878_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|268aa|up_3|NZ_CP050244.1_871965_872769_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|286aa|up_2|NZ_CP050244.1_872790_873648_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|up_1|NZ_CP050244.1_873748_874096_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|537aa|up_0|NZ_CP050244.1_874276_875887_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|226aa|down_0|NZ_CP050244.1_877132_877810_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|63aa|down_1|NZ_CP050244.1_877873_878062_+	NA	NA|427aa|down_2|NZ_CP050244.1_878136_879417_-	PRK07049, PRK07049, cystathionine gamma-synthase family protein	NA|179aa|down_3|NZ_CP050244.1_879670_880207_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_4|NZ_CP050244.1_880306_880969_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_5|NZ_CP050244.1_881201_882128_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_6|NZ_CP050244.1_882124_882895_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|127aa|down_7|NZ_CP050244.1_882962_883343_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|285aa|down_8|NZ_CP050244.1_883406_884261_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|265aa|down_9|NZ_CP050244.1_884276_885071_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
GCF_012980825.1_ASM1298082v1	NZ_CP050244	Erwinia amylovora strain TS3238 chromosome, complete genome	4	3414290-3414375	4	CRISPRCasFinder	no		cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TTAGCTCCCCGCGCGGACGCGGGCT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|242aa|up_9|NZ_CP050244.1_3396242_3396968_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|780aa|up_8|NZ_CP050244.1_3397757_3400097_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|1845aa|up_7|NZ_CP050244.1_3401083_3406618_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|586aa|up_6|NZ_CP050244.1_3406656_3408414_+	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|166aa|up_5|NZ_CP050244.1_3408557_3409055_-	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|214aa|up_4|NZ_CP050244.1_3409059_3409701_-	PRK09481, sspA, stringent starvation protein A; Provisional	NA|131aa|up_3|NZ_CP050244.1_3410009_3410402_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|143aa|up_2|NZ_CP050244.1_3410417_3410846_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|376aa|up_1|NZ_CP050244.1_3411090_3412218_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|133aa|up_0|NZ_CP050244.1_3412394_3412793_+	PRK11677, PRK11677, DUF1043 family protein	NA|354aa|down_0|NZ_CP050244.1_3414432_3415494_+	PRK10898, PRK10898, serine endoprotease DegS	NA|312aa|down_1|NZ_CP050244.1_3415542_3416478_-	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|157aa|down_2|NZ_CP050244.1_3416922_3417393_+	PRK05066, PRK05066, transcriptional regulator ArgR	NA|88aa|down_3|NZ_CP050244.1_3417888_3418152_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|90aa|down_4|NZ_CP050244.1_3418263_3418533_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|653aa|down_5|NZ_CP050244.1_3418745_3420704_-	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional	NA|311aa|down_6|NZ_CP050244.1_3420717_3421650_-	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|68aa|down_7|NZ_CP050244.1_3421657_3421861_-	PRK11594, PRK11594, efflux system membrane protein; Provisional	NA|306aa|down_8|NZ_CP050244.1_3422138_3423056_+	PRK10632, PRK10632, HTH-type transcriptional activator AaeR	NA|482aa|down_9|NZ_CP050244.1_3423159_3424605_-	PRK10735, tldD, protease TldD; Provisional
