The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	753360	761179	2860303		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|753360_754416_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|754415_755102_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|755076_755550_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|755890_756331_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|756610_757195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|757293_758007_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|758010_758430_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|758431_759100_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|759450_760044_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217800.1|760027_761179_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	6.0e-23
>prophage 2
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	773160	787670	2860303		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663039.1|773160_774219_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|774377_774920_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|775527_776445_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|776537_776639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|776716_778222_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|778561_779062_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|779081_779948_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|780748_781147_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855509.1|781109_783215_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|783332_784304_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|784803_784959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876317.1|784997_785969_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.6e-138
WP_001245572.1|785955_786912_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|786908_787670_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	868363	889864	2860303	integrase,terminase,coat	Staphylococcus_phage(77.78%)	33	866670:866691	887332:887353
866670:866691	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|868363_869389_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|869381_870077_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|870094_870916_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|871058_872279_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|872366_873095_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033318.1|873118_873847_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	1.0e-28
WP_001228759.1|873916_874348_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|874364_874823_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|874834_875167_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|875359_875623_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|875615_875888_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|875899_876046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|876038_876248_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|876250_876571_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|876634_877504_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|877520_878990_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|879275_879638_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|879639_879924_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|879920_880562_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|881078_881420_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|881431_882010_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|882027_882246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|882296_882824_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|882955_883168_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|883164_883734_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|884041_884842_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|884919_885477_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|885850_886003_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|886073_886184_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|886185_886371_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000752917.1|887494_887689_+	CsbD family protein	NA	NA	NA	NA	NA
887332:887353	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|887922_888774_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|889102_889864_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	978136	1023862	2860303	tRNA,transposase,protease,bacteriocin	Streptococcus_phage(33.33%)	39	NA	NA
WP_000277723.1|978136_979783_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_000448937.1|979808_980798_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|981092_981488_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|981858_982578_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|982698_983685_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|983732_985541_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|986000_986807_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|986829_987195_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|987298_987892_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|988077_988425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|988441_989077_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|989093_989903_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|989899_990754_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|990774_992160_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|992169_994014_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|994292_995063_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|995259_996345_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|996686_998255_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889183.1|998397_999156_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|999321_1000047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|1000048_1000900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|1001634_1002144_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154228.1|1002256_1003447_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1003424_1004600_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|1005032_1006517_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|1006497_1006758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049958.1|1006757_1008320_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.2e-35
WP_000928413.1|1008621_1009425_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|1009640_1011965_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1011981_1013340_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|1013478_1014990_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1015478_1016048_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1016257_1016476_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1016556_1017543_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1017741_1017918_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1017932_1018535_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_170171870.1|1018930_1020577_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.5	2.8e-292
WP_029656376.1|1021587_1021854_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
WP_000870825.1|1021897_1023862_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1056067	1064540	2860303		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1056067_1056550_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1056536_1057661_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1057664_1058369_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1058368_1058632_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1058633_1059305_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032747.1|1059297_1061487_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1061465_1062950_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030810.1|1062942_1063971_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1063973_1064540_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1322459	1327409	2860303		Staphylococcus_phage(100.0%)	9	NA	NA
WP_001659797.1|1322459_1322657_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1323346_1323571_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1323866_1324073_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1324768_1324879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1325307_1325493_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1326004_1326109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1326235_1326487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1326960_1327215_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1327214_1327409_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
>prophage 7
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1504164	1588792	2860303	capsid,tail,transposase,tRNA,protease,portal,head,terminase,holin,integrase	Staphylococcus_phage(82.76%)	113	1541126:1541141	1589759:1589774
WP_000858801.1|1504164_1505457_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525064.1|1505778_1508472_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.6	1.1e-46
WP_000049916.1|1508495_1509467_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361537.1|1509453_1510656_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	5.4e-35
WP_000690024.1|1510660_1511803_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1512060_1512378_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1512713_1513394_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154692.1|1513465_1514053_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005216.1|1514042_1514618_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389518.1|1514631_1515876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245912.1|1515882_1517181_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776330.1|1517190_1518255_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269940.1|1518280_1519447_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1519833_1520034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442477.1|1520243_1520693_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096478.1|1520784_1521744_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1521745_1522471_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1522473_1523046_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1523476_1523749_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161742.1|1523919_1524918_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1524934_1526245_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1526461_1527637_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844924.1|1527892_1528084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|1528200_1528305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644394.1|1528347_1529007_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681761.1|1529083_1530052_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1530166_1531153_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001824277.1|1531313_1531430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069308.1|1531554_1533015_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902114.1|1533167_1534547_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.2e-56
WP_001163813.1|1534536_1535490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1535597_1535846_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1535951_1536497_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_170171874.1|1536899_1537844_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476889.1|1537901_1538807_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470325.1|1538897_1539083_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	96.7	1.9e-24
WP_000277723.1|1539547_1541194_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
1541126:1541141	attL	CAAATACATTTAAAAA	NA	NA	NA	NA
WP_024937002.1|1541281_1542265_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1542260_1543199_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909204.1|1543588_1545043_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
WP_000339141.1|1545053_1545356_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340977.1|1545481_1545856_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1545911_1546199_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1546245_1546398_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582126.1|1546387_1550173_-	hypothetical protein	NA	G4KNR1	Staphylococcus_phage	100.0	0.0e+00
WP_000567420.1|1550188_1551673_-|tail	phage tail family protein	tail	G4KNR0	Staphylococcus_phage	100.0	1.6e-299
WP_170171875.1|1551672_1556202_-|tail	phage tail tape measure protein	tail	A0A2I6PE03	Staphylococcus_phage	99.7	0.0e+00
WP_001096355.1|1556446_1556797_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1556846_1557071_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1557112_1557757_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1557757_1558165_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1558161_1558566_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1558562_1558925_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1558908_1559193_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238237.1|1559205_1559466_-	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_103146569.1|1559485_1560631_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.1e-214
WP_000642728.1|1560654_1561392_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025272.1|1561375_1562563_-|portal	phage portal protein	portal	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
WP_000625097.1|1562578_1564240_-|terminase	terminase large subunit	terminase	G4KNQ0	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1564236_1564581_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1564711_1565011_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1565242_1565659_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1565686_1565887_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|1565886_1566537_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000237868.1|1566695_1566845_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.0	1.1e-17
WP_001125015.1|1566847_1567048_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1567022_1567211_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|1567207_1567453_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061834.1|1567489_1567996_-	dUTP diphosphatase	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_000889683.1|1568010_1568172_-	hypothetical protein	NA	A0A2I6PDW5	Staphylococcus_phage	100.0	2.4e-23
WP_000454994.1|1568172_1568454_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000028424.1|1568454_1568628_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_001065099.1|1568617_1568869_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	100.0	6.4e-39
WP_000131388.1|1568883_1569126_-	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_000029366.1|1569129_1569486_-	hypothetical protein	NA	G4KNP3	Staphylococcus_phage	100.0	1.1e-60
WP_001187236.1|1569486_1569672_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_000049798.1|1569676_1570081_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123669.1|1570090_1570312_-	DUF3269 family protein	NA	A0A2I6PDV8	Staphylococcus_phage	100.0	1.7e-35
WP_000256594.1|1570324_1570483_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_000803062.1|1570476_1571256_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190254.1|1571265_1572036_-	conserved phage C-terminal domain-containing protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1572101_1572383_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|1572375_1572525_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000057262.1|1572521_1573196_-	hypothetical protein	NA	G4KNN9	Staphylococcus_phage	100.0	8.6e-131
WP_001099007.1|1573207_1573651_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_000840496.1|1573647_1574298_-	ERF family protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|1574298_1574835_-	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001556704.1|1574847_1575108_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000829610.1|1575112_1575430_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_001285954.1|1575518_1575680_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124198.1|1575691_1575955_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001037095.1|1575984_1576203_-	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_001025595.1|1576199_1576526_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001662405.1|1576602_1576740_-	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_000435343.1|1576759_1577020_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148617.1|1577032_1577785_-	phage antirepressor KilAC domain-containing protein	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000801108.1|1577845_1578073_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000502678.1|1578074_1578266_-	hypothetical protein	NA	A0A2I6PDT1	Staphylococcus_phage	100.0	9.5e-27
WP_000772137.1|1578322_1578532_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|1578524_1578665_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435346.1|1578679_1579123_-	hypothetical protein	NA	G4KNN0	Staphylococcus_phage	100.0	2.0e-75
WP_000548578.1|1579135_1579375_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|1579545_1580253_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001049399.1|1580264_1580420_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001089804.1|1580406_1580592_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1580791_1580974_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1581009_1581156_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191466.1|1581152_1581767_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1581892_1583098_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001838630.1|1583140_1585168_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	3.3e-109
WP_001824281.1|1585179_1586088_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987767.1|1586334_1588086_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	2.6e-22
WP_000064078.1|1588066_1588792_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
1589759:1589774	attR	CAAATACATTTAAAAA	NA	NA	NA	NA
>prophage 8
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1643914	1652226	2860303	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1643914_1644700_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924210.1|1644825_1645716_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1645725_1647072_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1647185_1648286_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1648288_1648966_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1649096_1650203_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1650426_1652226_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1722870	1731913	2860303	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1722870_1723389_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1723410_1725684_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1725886_1728166_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1728440_1728701_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1728719_1729859_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1729881_1730907_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1730908_1731913_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1858026	1903953	2860303	tRNA,protease	Staphylococcus_phage(94.29%)	43	NA	NA
WP_001050576.1|1858026_1864584_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	93.2	1.2e-290
WP_000836467.1|1864909_1865221_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	5.3e-51
WP_001557386.1|1865242_1867660_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025062.1|1867948_1869130_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_000526539.1|1869239_1870193_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764429.1|1870189_1870753_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	9.2e-102
WP_000757543.1|1870872_1871274_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1871845_1872673_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1872675_1872795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1872906_1873908_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1874029_1874494_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1874506_1875688_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_170171879.1|1875698_1876331_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.1	7.1e-111
WP_000077340.1|1876337_1877381_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	1.2e-195
WP_001261664.1|1877861_1879364_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1879885_1880200_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1880199_1881492_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1881509_1881902_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1882306_1883161_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384172.1|1883436_1883661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1884438_1884882_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030460.1|1884868_1885312_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	5.4e-57
WP_025175276.1|1885609_1886245_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1886411_1887032_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1887500_1888214_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1888471_1888774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1889029_1889395_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1889391_1889745_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1889994_1890828_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1891039_1891948_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1892072_1893266_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1893637_1895230_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1895523_1896270_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1896274_1896748_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1896813_1897071_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778518.1|1897067_1898069_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	4.8e-186
WP_000348384.1|1898073_1899552_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_078065177.1|1899711_1900167_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_001838615.1|1900469_1901120_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_000070638.1|1901200_1902196_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1902271_1902898_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1902938_1903280_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1903380_1903953_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 11
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1909507	1917822	2860303	transposase	Staphylococcus_phage(66.67%)	9	NA	NA
WP_001044434.1|1909507_1910362_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1910612_1911158_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1911574_1911754_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1912064_1912325_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1912377_1912728_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1913412_1913862_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_001066124.1|1914593_1915355_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1915347_1916640_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000206347.1|1917033_1917822_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
>prophage 12
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	1946373	2019359	2860303	capsid,plate,tail,tRNA,portal,head,terminase,holin,integrase	Staphylococcus_phage(77.46%)	91	1988139:1988156	2022823:2022840
WP_000181394.1|1946373_1946844_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379977.1|1946848_1947976_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1948126_1948849_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649908.1|1948841_1950299_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063548.1|1950557_1951619_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1960486_1960933_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869459.1|1961029_1961980_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939522.1|1961985_1962441_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011611.1|1962521_1963811_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1964103_1965198_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597233.1|1965388_1967125_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|1967415_1967958_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284757.1|1968260_1969298_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1969449_1970427_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000960806.1|1970687_1971524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535839.1|1971532_1973050_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1973064_1973379_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124417.1|1973356_1974175_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_170171880.1|1974435_1975245_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163284.1|1975584_1976100_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1976229_1976391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1976737_1976818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001286805.1|1977143_1977329_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|1977330_1977441_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1977511_1977664_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148115.1|1977906_1979352_-	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	99.6	9.1e-295
WP_000354129.1|1979332_1979770_-|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	97.9	5.9e-72
WP_000398864.1|1979825_1980221_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	99.2	4.7e-68
WP_073429844.1|1980226_1981465_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.5	2.2e-209
WP_170171881.1|1981477_1983352_-	glucosaminidase domain-containing protein	NA	A0A2H4JB48	uncultured_Caudovirales_phage	99.2	0.0e+00
WP_000466777.1|1983488_1983788_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_001790193.1|1983828_1984002_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000705914.1|1984011_1984389_-	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	99.2	3.4e-60
WP_000259612.1|1984388_1986212_-|plate	BppU family phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	99.0	3.7e-293
WP_170171882.1|1986211_1988110_-	hypothetical protein	NA	Q4ZB26	Staphylococcus_virus	98.1	0.0e+00
WP_170171883.1|1988122_1990009_-|tail	phage tail protein	tail	Q4ZBQ3	Staphylococcus_phage	99.8	0.0e+00
1988139:1988156	attL	TAATAATCCTTGATTAAC	NA	NA	NA	NA
WP_000560181.1|1990019_1990961_-|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_000379454.1|1990975_1994119_-	hypothetical protein	NA	Q4ZBY3	Staphylococcus_virus	100.0	0.0e+00
WP_000880587.1|1994122_1994407_-	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_031833107.1|1994451_1994958_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	99.4	4.5e-92
WP_000057582.1|1995024_1995582_-|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000270192.1|1995582_1996008_-	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_001151330.1|1996020_1996434_-	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000483041.1|1996420_1996756_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000177351.1|1996767_1997118_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000002931.1|1997123_1997267_-	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000235168.1|1997278_1998193_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019219.1|1998209_1998794_-	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000346033.1|1998896_1999103_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000184133.1|1999104_2000058_-|capsid	minor capsid protein	capsid	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
WP_000177426.1|2000026_2001451_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
WP_001037584.1|2001447_2002671_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	99.5	6.4e-241
WP_000594088.1|2002663_2003158_-|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_000286968.1|2003512_2003914_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_064140002.1|2003914_2004088_-	transcriptional regulator	NA	A0A0H4ISR0	Staphylococcus_phage	94.7	9.2e-21
WP_001072794.1|2004080_2004284_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000132920.1|2004280_2004475_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_170171884.1|2004471_2004678_-	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	98.5	2.4e-20
WP_001209219.1|2004694_2004868_-	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
WP_000181819.1|2004904_2005438_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2005430_2005673_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065103.1|2005662_2005899_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	98.7	1.2e-34
WP_001793991.1|2005891_2006263_-	hypothetical protein	NA	A0ZS31	Staphylococcus_virus	96.7	3.6e-62
WP_001126836.1|2006271_2006520_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_000029379.1|2006520_2006880_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	98.3	3.8e-61
WP_000772916.1|2006891_2007149_-	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_001187263.1|2007149_2007335_-	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	100.0	2.4e-27
WP_000049812.1|2007339_2007744_-	DUF1064 domain-containing protein	NA	A0A059T5A5	Staphylococcus_phage	97.0	3.5e-71
WP_001123688.1|2007754_2007976_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000237153.1|2007988_2008150_-	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_000803056.1|2008143_2008923_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_000139436.1|2008933_2009677_-	conserved phage C-terminal domain-containing protein	NA	A0A2I6PDA9	Staphylococcus_phage	99.6	2.5e-115
WP_000240900.1|2009669_2010434_-	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.4	5.0e-143
WP_001121805.1|2010433_2011102_-	hypothetical protein	NA	Q4ZD97	Staphylococcus_virus	98.2	1.1e-125
WP_103215250.1|2011115_2011544_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.1	6.4e-63
WP_000139720.1|2011543_2012167_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_001077280.1|2012159_2012381_-	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000291090.1|2012390_2012651_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_103215249.1|2012747_2012909_-	DUF1270 family protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	4.3e-20
WP_000594789.1|2012901_2013123_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|2013193_2013424_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148589.1|2013599_2014340_-	phage antirepressor KilAC domain-containing protein	NA	A0A1W6JPN2	Staphylococcus_phage	100.0	6.3e-135
WP_000933365.1|2014341_2014527_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_000394410.1|2014972_2015455_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000438352.1|2015555_2015735_-	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_001121116.1|2015748_2015985_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|2016136_2016451_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|2016463_2016925_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_170171885.1|2017108_2018041_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	99.7	1.1e-173
WP_000337827.1|2018020_2018200_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145722.1|2018312_2019359_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
2022823:2022840	attR	TAATAATCCTTGATTAAC	NA	NA	NA	NA
>prophage 13
NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2860303	2693973	2715676	2860303	transposase	Streptococcus_phage(64.71%)	22	NA	NA
WP_001015311.1|2693973_2694654_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_001240982.1|2695058_2697977_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|2697980_2698535_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001038790.1|2698889_2699627_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001814874.1|2699751_2699835_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001096887.1|2700376_2701171_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001255866.1|2701740_2702649_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|2702681_2703416_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000233000.1|2703396_2704266_-	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	90.7	6.7e-152
WP_000205227.1|2704280_2704505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000136908.1|2704647_2706210_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	88.8	7.8e-260
WP_000323438.1|2706211_2706628_-	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	98.6	1.2e-71
WP_002360685.1|2706628_2706925_-	hypothetical protein	NA	A0A2K5B2B2	Erysipelothrix_phage	91.8	4.6e-44
WP_001062586.1|2708129_2708732_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	38.3	5.7e-17
WP_000713595.1|2708745_2708916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067799.1|2709238_2709919_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.7e-126
WP_038412706.1|2710659_2711340_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	6.5e-126
WP_000143686.1|2711968_2712616_+	type A-8 chloramphenicol O-acetyltransferase	NA	A0A1X9I6V6	Streptococcus_phage	57.2	4.3e-71
WP_001289198.1|2712930_2713329_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_061820394.1|2713310_2713856_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_001015311.1|2713909_2714590_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_001015311.1|2714995_2715676_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
