assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	1	287490-287627	1	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGA	27	2	35	287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287517-287544|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600|287572-287600	NZ_CP053101.1_403681-403708|NZ_CP053101.1_627459-627486|NZ_CP053101.1_797475-797448|NZ_CP053101.1_1035282-1035255|NZ_CP053101.1_1325206-1325233|NZ_CP053101.1_1413979-1413952|NZ_CP053101.1_1657837-1657810|NZ_CP053101.1_1872324-1872351|NZ_CP053101.1_1978912-1978885|NZ_CP053101.1_2329470-2329443|NZ_CP053101.1_2687012-2687039|NZ_CP053101.1_363587-363614|NZ_CP053101.1_909566-909539|NZ_CP053101.1_1111510-1111537|NZ_CP053101.1_1777318-1777345|NZ_CP053101.1_1988262-1988235|NZ_CP053101.1_1988320-1988293|NZ_CP053101.1_2340278-2340251|NZ_CP053101.1_2803903-2803876|NZ_CP053101.1_806455-806427|NZ_CP053101.1_1009308-1009280|NZ_CP053101.1_2509724-2509696|NZ_CP053101.1_2509780-2509752|NZ_CP053101.1_287461-287489|NZ_CP053101.1_2178245-2178273|NZ_CP053101.1_1035340-1035312|NZ_CP053101.1_1414037-1414009|NZ_CP053101.1_1657782-1657754|NZ_CP053101.1_1657895-1657867|NZ_CP053101.1_1672370-1672342|NZ_CP053101.1_1977570-1977542|NZ_CP053101.1_363531-363559|NZ_CP053101.1_627571-627599|NZ_CP053101.1_1111452-1111480|NZ_CP053101.1_1325264-1325292	NA	2	2	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA|131aa|down_5|NZ_CP053101.1_292727_293120_+	NA|574aa|up_9|NZ_CP053101.1_274881_276603_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP053101.1_276746_277421_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_7|NZ_CP053101.1_277666_279421_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP053101.1_279423_280164_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP053101.1_280276_280720_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP053101.1_280712_281414_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP053101.1_281754_284046_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP053101.1_284271_284976_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP053101.1_285124_285916_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP053101.1_285931_287368_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP053101.1_287862_288624_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_CP053101.1_288874_289789_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_CP053101.1_289816_290221_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_CP053101.1_290235_291117_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_CP053101.1_291348_292347_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_CP053101.1_292727_293120_+	NA	NA|459aa|down_6|NZ_CP053101.1_293247_294624_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP053101.1_294857_295850_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|316aa|down_8|NZ_CP053101.1_296175_297123_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_CP053101.1_297174_297834_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	2	627467-627554	2	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	AAAAGAAATTCTACAGGCAATGCAAGTTGG	30	1	1	627497-627524	NZ_CP053101.1_1977531-1977504	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|34aa|up_5|NZ_CP053101.1_621893_621995_+,NA|36aa|down_5|NZ_CP053101.1_632463_632571_+	NA|359aa|up_9|NZ_CP053101.1_618440_619517_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|114aa|up_8|NZ_CP053101.1_619693_620035_+	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|441aa|up_7|NZ_CP053101.1_620086_621409_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|147aa|up_6|NZ_CP053101.1_621395_621836_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|34aa|up_5|NZ_CP053101.1_621893_621995_+	NA	NA|465aa|up_4|NZ_CP053101.1_622459_623854_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|212aa|up_3|NZ_CP053101.1_623854_624490_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|207aa|up_2|NZ_CP053101.1_624536_625157_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|211aa|up_1|NZ_CP053101.1_625296_625929_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_0|NZ_CP053101.1_626376_627315_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|down_0|NZ_CP053101.1_627812_628349_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|down_1|NZ_CP053101.1_628517_628994_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|down_2|NZ_CP053101.1_629033_630329_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|down_3|NZ_CP053101.1_630356_630878_+	pfam08741, YwhD, YwhD family	NA|337aa|down_4|NZ_CP053101.1_631376_632387_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|down_5|NZ_CP053101.1_632463_632571_+	NA	NA|139aa|down_6|NZ_CP053101.1_632663_633080_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|down_7|NZ_CP053101.1_633076_634738_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|down_8|NZ_CP053101.1_635071_635707_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_9|NZ_CP053101.1_636079_636967_+	cd01143, YvrC, Periplasmic binding protein YvrC
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	3	909555-909639	3	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTTTCGAAATTCTCTGTGTTTGGGCCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|NZ_CP053101.1_895926_896502_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP053101.1_896506_897031_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP053101.1_897046_897622_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP053101.1_897781_901258_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP053101.1_901258_904912_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP053101.1_905075_905978_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP053101.1_906302_906692_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP053101.1_906862_908179_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP053101.1_908230_909055_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP053101.1_909168_909477_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP053101.1_910131_911946_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP053101.1_912149_914759_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP053101.1_914817_915687_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP053101.1_915796_916942_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP053101.1_916925_917567_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|374aa|down_5|NZ_CP053101.1_917559_918681_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|172aa|down_6|NZ_CP053101.1_918658_919174_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_7|NZ_CP053101.1_919484_919919_+	pfam03642, MAP, MAP domain	NA|62aa|down_8|NZ_CP053101.1_920175_920361_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_9|NZ_CP053101.1_920655_921597_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	4	1184395-1184486	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,RT,DinG,csa3,WYL	Unclear	TAAGAAACACTAATCAATAAATTGATAA	28	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|NZ_CP053101.1_1174226_1174871_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP053101.1_1174877_1175519_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP053101.1_1175878_1176067_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP053101.1_1176509_1176884_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP053101.1_1176898_1178545_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP053101.1_1178734_1180795_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP053101.1_1180997_1181570_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP053101.1_1181574_1182561_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP053101.1_1182553_1183480_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP053101.1_1183472_1184207_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP053101.1_1184577_1184811_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP053101.1_1184926_1185658_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP053101.1_1185804_1189371_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP053101.1_1189370_1190621_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP053101.1_1190607_1190940_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP053101.1_1190965_1192333_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP053101.1_1192767_1193043_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP053101.1_1193230_1193734_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP053101.1_1193733_1194471_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP053101.1_1194573_1194924_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	5	1977413-1977502	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,RT,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	32	1	3	1977445-1977470|1977445-1977470|1977445-1977470	NZ_CP053101.1_797468-797493|NZ_CP053101.1_1978905-1978930|NZ_CP053101.1_2329463-2329488	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP053101.1_1971659_1971935_+,NA|129aa|up_1|NZ_CP053101.1_1975917_1976304_-,NA|138aa|down_1|NZ_CP053101.1_1979224_1979638_-,NA|37aa|down_2|NZ_CP053101.1_1979666_1979777_-,NA|31aa|down_6|NZ_CP053101.1_1982782_1982875_-	NA|419aa|up_9|NZ_CP053101.1_1969582_1970839_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP053101.1_1970841_1971042_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP053101.1_1971188_1971653_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP053101.1_1971659_1971935_+	NA	NA|406aa|up_5|NZ_CP053101.1_1972212_1973430_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP053101.1_1973542_1974172_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP053101.1_1974161_1975205_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP053101.1_1975201_1975903_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP053101.1_1975917_1976304_-	NA	NA|253aa|up_0|NZ_CP053101.1_1976520_1977279_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP053101.1_1977807_1978794_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP053101.1_1979224_1979638_-	NA	NA|37aa|down_2|NZ_CP053101.1_1979666_1979777_-	NA	NA|244aa|down_3|NZ_CP053101.1_1979862_1980594_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP053101.1_1980595_1981909_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP053101.1_1982200_1982701_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP053101.1_1982782_1982875_-	NA	DEDDh|185aa|down_7|NZ_CP053101.1_1983090_1983645_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP053101.1_1983712_1984783_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP053101.1_1985029_1985560_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	6	2222872-2222974	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,RT,DinG,csa3,WYL	Type I-A	AGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGT	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP053101.1_2217704_2217935_-,NA|364aa|up_0|NZ_CP053101.1_2221724_2222816_+,NA|35aa|down_0|NZ_CP053101.1_2223330_2223435_-,NA|53aa|down_1|NZ_CP053101.1_2224111_2224270_+	NA|237aa|up_9|NZ_CP053101.1_2213313_2214024_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP053101.1_2214145_2214589_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP053101.1_2214788_2215202_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP053101.1_2215657_2217031_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP053101.1_2217704_2217935_-	NA	NA|313aa|up_4|NZ_CP053101.1_2217965_2218904_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP053101.1_2219339_2220005_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP053101.1_2220156_2220477_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP053101.1_2220478_2221459_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP053101.1_2221724_2222816_+	NA	NA|35aa|down_0|NZ_CP053101.1_2223330_2223435_-	NA	NA|53aa|down_1|NZ_CP053101.1_2224111_2224270_+	NA	NA|286aa|down_2|NZ_CP053101.1_2224929_2225787_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP053101.1_2225854_2226637_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP053101.1_2226868_2228674_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP053101.1_2229354_2230893_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP053101.1_2230927_2233060_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP053101.1_2233071_2233506_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP053101.1_2233505_2234612_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2439aa|down_9|NZ_CP053101.1_2234930_2242247_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	7	2303141-2303265	7	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|93aa|up_7|NZ_CP053101.1_2295211_2295490_+,NA|61aa|up_1|NZ_CP053101.1_2302063_2302246_-,NA|60aa|up_0|NZ_CP053101.1_2302895_2303075_-,NA	NA|809aa|up_9|NZ_CP053101.1_2290997_2293424_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_CP053101.1_2293483_2294338_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP053101.1_2295211_2295490_+	NA	NA|506aa|up_6|NZ_CP053101.1_2295499_2297017_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP053101.1_2297249_2298065_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP053101.1_2298359_2298785_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP053101.1_2299163_2299868_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP053101.1_2299904_2301569_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP053101.1_2302063_2302246_-	NA	NA|60aa|up_0|NZ_CP053101.1_2302895_2303075_-	NA	NA|133aa|down_0|NZ_CP053101.1_2303663_2304062_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP053101.1_2304075_2304513_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP053101.1_2304752_2305556_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP053101.1_2305560_2306367_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP053101.1_2306356_2307217_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP053101.1_2307213_2308023_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP053101.1_2308560_2308929_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP053101.1_2308945_2309890_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP053101.1_2309964_2310354_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP053101.1_2310377_2310743_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	8	2545637-2545720	8	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	ACAGACAATGCAAGTTGGGGTGTGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|250aa|up_0|NZ_CP053101.1_2544621_2545371_+,NA|122aa|down_9|NZ_CP053101.1_2555973_2556339_-	NA|451aa|up_9|NZ_CP053101.1_2535141_2536494_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|396aa|up_8|NZ_CP053101.1_2536555_2537743_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|259aa|up_7|NZ_CP053101.1_2538136_2538913_-	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|221aa|up_6|NZ_CP053101.1_2538905_2539568_-	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|359aa|up_5|NZ_CP053101.1_2539913_2540990_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|89aa|up_4|NZ_CP053101.1_2541344_2541611_-	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|up_3|NZ_CP053101.1_2541610_2541868_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|152aa|up_2|NZ_CP053101.1_2542226_2542682_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|up_1|NZ_CP053101.1_2542849_2544427_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|250aa|up_0|NZ_CP053101.1_2544621_2545371_+	NA	NA|398aa|down_0|NZ_CP053101.1_2545836_2547030_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|down_1|NZ_CP053101.1_2547041_2547791_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_2|NZ_CP053101.1_2547783_2548599_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_3|NZ_CP053101.1_2548595_2549465_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|down_4|NZ_CP053101.1_2549461_2550397_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|down_5|NZ_CP053101.1_2550409_2552008_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|down_6|NZ_CP053101.1_2552150_2553452_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|down_7|NZ_CP053101.1_2553444_2554263_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|down_8|NZ_CP053101.1_2554273_2555095_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|122aa|down_9|NZ_CP053101.1_2555973_2556339_-	NA
GCF_013008375.1_ASM1300837v1	NZ_CP053101	Staphylococcus aureus subsp. aureus strain EDCC5398 chromosome, complete genome	9	2687028-2687109	9	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2687052-2687085	NZ_CP053101.1_1009267-1009234	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|163aa|up_9|NZ_CP053101.1_2677437_2677926_-,NA|43aa|up_3|NZ_CP053101.1_2684809_2684938_-,NA|167aa|up_1|NZ_CP053101.1_2685859_2686360_+,NA	NA|163aa|up_9|NZ_CP053101.1_2677437_2677926_-	NA	NA|256aa|up_8|NZ_CP053101.1_2678100_2678868_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_7|NZ_CP053101.1_2679228_2681040_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|up_6|NZ_CP053101.1_2681554_2682043_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|up_5|NZ_CP053101.1_2682318_2683020_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|NZ_CP053101.1_2683627_2684683_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|43aa|up_3|NZ_CP053101.1_2684809_2684938_-	NA	NA|190aa|up_2|NZ_CP053101.1_2685092_2685662_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|up_1|NZ_CP053101.1_2685859_2686360_+	NA	NA|77aa|up_0|NZ_CP053101.1_2686579_2686810_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|NZ_CP053101.1_2687213_2687591_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|NZ_CP053101.1_2687607_2688429_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|NZ_CP053101.1_2688447_2688747_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|NZ_CP053101.1_2688877_2689435_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|NZ_CP053101.1_2689427_2690132_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|NZ_CP053101.1_2690229_2691240_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_6|NZ_CP053101.1_2691259_2692090_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|342aa|down_7|NZ_CP053101.1_2692230_2693256_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|297aa|down_8|NZ_CP053101.1_2693476_2694367_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|447aa|down_9|NZ_CP053101.1_2694466_2695807_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]
