assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	1	230051-230142	1	CRISPRCasFinder	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA|70aa|up_9|NZ_CP053247.1_219302_219512_-,NA	NA|70aa|up_9|NZ_CP053247.1_219302_219512_-	NA	NA|1321aa|up_8|NZ_CP053247.1_219566_223529_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053247.1_223568_224207_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053247.1_224494_225586_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053247.1_225585_226278_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053247.1_226289_226676_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP053247.1_226683_227496_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053247.1_227492_228083_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053247.1_228093_228588_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|441aa|up_0|NZ_CP053247.1_228608_229931_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053247.1_230565_231162_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053247.1_231182_231410_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053247.1_231447_232689_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP053247.1_235700_236621_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP053247.1_236620_236926_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP053247.1_237018_237618_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP053247.1_237614_240161_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP053247.1_240160_241333_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP053247.1_241462_242155_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP053247.1_242127_243156_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	2	357942-358149	2,1	CRISPRCasFinder,PILER-CR	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,GATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,30	0	0	NA	NA	I-F:I-F	3,2	3	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA	NA|431aa|up_9|NZ_CP053247.1_342588_343881_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP053247.1_343971_345315_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP053247.1_345325_345937_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP053247.1_346095_350202_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP053247.1_350336_350831_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP053247.1_351376_352342_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP053247.1_352464_354231_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP053247.1_354231_355953_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP053247.1_355994_356699_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP053247.1_356983_357202_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP053247.1_358361_360638_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP053247.1_360668_360989_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP053247.1_361311_361536_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP053247.1_361607_363554_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP053247.1_363550_364666_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP053247.1_364816_365773_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP053247.1_365769_367428_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP053247.1_367853_368549_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP053247.1_369032_369932_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP053247.1_370075_371728_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	3	1101215-1101356	3	CRISPRCasFinder	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA|548aa|up_5|NZ_CP053247.1_1095454_1097098_+,NA|237aa|up_4|NZ_CP053247.1_1097066_1097777_+,NA	NA|181aa|up_9|NZ_CP053247.1_1090983_1091526_+	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|196aa|up_8|NZ_CP053247.1_1091600_1092188_+	pfam16449, MatB, Fimbrillin MatB	NA|223aa|up_7|NZ_CP053247.1_1092245_1092914_+	pfam18649, EcpB_C, EcpB C-terminal domain	NA|842aa|up_6|NZ_CP053247.1_1092939_1095465_+	pfam15976, CooC_C, CS1-pili formation C-terminal	NA|548aa|up_5|NZ_CP053247.1_1095454_1097098_+	NA	NA|237aa|up_4|NZ_CP053247.1_1097066_1097777_+	NA	NA|110aa|up_3|NZ_CP053247.1_1098090_1098420_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|205aa|up_2|NZ_CP053247.1_1098668_1099283_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|80aa|up_1|NZ_CP053247.1_1099689_1099929_+	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|405aa|up_0|NZ_CP053247.1_1099898_1101112_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|698aa|down_0|NZ_CP053247.1_1101439_1103533_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|down_1|NZ_CP053247.1_1103516_1104656_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|261aa|down_2|NZ_CP053247.1_1104645_1105428_-	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|91aa|down_3|NZ_CP053247.1_1105429_1105702_-	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|251aa|down_4|NZ_CP053247.1_1105704_1106457_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|124aa|down_5|NZ_CP053247.1_1106453_1106825_-	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|284aa|down_6|NZ_CP053247.1_1106817_1107669_-	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|327aa|down_7|NZ_CP053247.1_1108055_1109036_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|114aa|down_8|NZ_CP053247.1_1109050_1109392_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|549aa|down_9|NZ_CP053247.1_1109396_1111043_+	PRK07193, fliF, flagellar MS-ring protein; Reviewed
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	4	1399212-1399344	2	PILER-CR	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA	NA|126aa|up_9|NZ_CP053247.1_1389915_1390293_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP053247.1_1390299_1391142_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP053247.1_1391219_1391699_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP053247.1_1391890_1393753_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP053247.1_1393745_1394276_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP053247.1_1394383_1395715_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP053247.1_1395773_1396061_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP053247.1_1396057_1397344_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP053247.1_1397394_1398336_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP053247.1_1398350_1399121_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP053247.1_1399593_1401108_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP053247.1_1401138_1402281_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP053247.1_1402409_1403627_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP053247.1_1403700_1405254_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP053247.1_1405362_1406148_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP053247.1_1406153_1406744_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP053247.1_1406949_1407345_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP053247.1_1407605_1410824_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP053247.1_1410841_1411990_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|305aa|down_9|NZ_CP053247.1_1413434_1414349_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	5	1484821-1484985	4	CRISPRCasFinder	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA	NA|288aa|up_9|NZ_CP053247.1_1475753_1476617_+	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|260aa|up_8|NZ_CP053247.1_1477135_1477915_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|up_7|NZ_CP053247.1_1477911_1478985_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|up_6|NZ_CP053247.1_1479106_1479268_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|202aa|up_5|NZ_CP053247.1_1479394_1480000_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|up_4|NZ_CP053247.1_1480392_1481982_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|up_3|NZ_CP053247.1_1482072_1482750_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|up_2|NZ_CP053247.1_1482764_1483211_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|up_1|NZ_CP053247.1_1483179_1483593_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|up_0|NZ_CP053247.1_1483695_1484727_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_0|NZ_CP053247.1_1485466_1485703_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|263aa|down_1|NZ_CP053247.1_1485843_1486632_+	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional	NA|226aa|down_2|NZ_CP053247.1_1486669_1487347_-	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional	NA|242aa|down_3|NZ_CP053247.1_1487304_1488030_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|257aa|down_4|NZ_CP053247.1_1488648_1489419_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|158aa|down_5|NZ_CP053247.1_1489409_1489883_+	PRK09917, PRK09917, threonine/serine exporter	NA|180aa|down_6|NZ_CP053247.1_1489989_1490529_+	PRK02854, PRK02854, primosomal protein DnaT	NA|246aa|down_7|NZ_CP053247.1_1490531_1491269_+	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|165aa|down_8|NZ_CP053247.1_1491317_1491812_+	PRK11667, PRK11667, hypothetical protein; Provisional	NA|764aa|down_9|NZ_CP053247.1_1492065_1494357_+	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	6	1646557-1646694	5	CRISPRCasFinder	no		cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Orphan	GAACTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA|325aa|down_6|NZ_CP053247.1_1654315_1655290_-	NA|340aa|up_9|NZ_CP053247.1_1634721_1635741_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP053247.1_1635744_1636308_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP053247.1_1636524_1637556_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP053247.1_1637579_1638344_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP053247.1_1638405_1639725_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP053247.1_1639791_1640790_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP053247.1_1640867_1642370_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053247.1_1642530_1643613_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053247.1_1643612_1644713_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053247.1_1644979_1646491_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053247.1_1646746_1647190_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053247.1_1647189_1650045_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP053247.1_1650100_1651297_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053247.1_1651489_1651993_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053247.1_1652038_1652455_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053247.1_1652616_1653621_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|325aa|down_6|NZ_CP053247.1_1654315_1655290_-	NA	NA|151aa|down_7|NZ_CP053247.1_1655411_1655864_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053247.1_1656008_1656602_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_9|NZ_CP053247.1_1656672_1657386_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	7	3401128-3401704	3,6,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCN	28,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA	NA|434aa|up_9|NZ_CP053247.1_3388578_3389880_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053247.1_3389927_3392162_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_7|NZ_CP053247.1_3392257_3393049_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP053247.1_3393276_3394914_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP053247.1_3395000_3396299_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP053247.1_3396358_3397273_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP053247.1_3397269_3398418_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|NZ_CP053247.1_3398432_3399326_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP053247.1_3399339_3399942_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP053247.1_3400114_3400786_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053247.1_3402347_3403826_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053247.1_3403852_3405130_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053247.1_3405448_3406234_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053247.1_3406303_3407758_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053247.1_3407779_3409189_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053247.1_3409166_3409946_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053247.1_3409942_3410803_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053247.1_3410949_3411525_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053247.1_3411541_3411802_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053247.1_3411792_3413064_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	8	3427412-3428538	4,7,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,18	18	TypeI-E	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA	NA|571aa|up_9|NZ_CP053247.1_3415621_3417334_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP053247.1_3417407_3418142_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_CP053247.1_3418406_3418559_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_6|NZ_CP053247.1_3418753_3421453_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_CP053247.1_3421550_3423113_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_CP053247.1_3423109_3423646_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_3|NZ_CP053247.1_3423660_3424716_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP053247.1_3424726_3425473_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP053247.1_3425454_3426105_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP053247.1_3427021_3427315_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP053247.1_3428558_3429596_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053247.1_3429847_3430756_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053247.1_3430757_3432185_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053247.1_3432184_3432790_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053247.1_3432839_3433163_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053247.1_3433356_3433668_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053247.1_3433686_3434397_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053247.1_3434396_3434876_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053247.1_3434872_3435922_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053247.1_3435902_3436664_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013085025.1_ASM1308502v1	NZ_CP053247	Escherichia coli strain SCU-482 chromosome, complete genome	9	4637079-4637202	8	CRISPRCasFinder	no	DEDDh	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,RT,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,cas14j	NA,NA|30aa|down_7|NZ_CP053247.1_4646099_4646189_+	NA|471aa|up_9|NZ_CP053247.1_4626532_4627945_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053247.1_4628501_4628711_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053247.1_4629166_4629793_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053247.1_4629813_4631916_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053247.1_4631928_4632567_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053247.1_4632630_4633299_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053247.1_4633295_4634081_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053247.1_4634084_4634897_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053247.1_4634908_4636513_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053247.1_4636638_4636944_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053247.1_4637517_4638774_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053247.1_4638814_4640188_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053247.1_4640402_4641044_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053247.1_4641083_4642232_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053247.1_4642522_4643734_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053247.1_4643846_4644779_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053247.1_4644775_4645801_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053247.1_4646099_4646189_+	NA	NA|390aa|down_8|NZ_CP053247.1_4646354_4647524_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053247.1_4647669_4648251_-	PRK10543, PRK10543, superoxide dismutase [Fe]
