assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	1	264891-265024	1	CRISPRCasFinder	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	GACAAATCTCAAAAAGAAGAGAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA,NA|45aa|down_0|NZ_CP053289.1_265217_265352_+	NA|621aa|up_9|NZ_CP053289.1_252524_254387_+	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|501aa|up_8|NZ_CP053289.1_254383_255886_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|507aa|up_7|NZ_CP053289.1_255887_257408_+	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|79aa|up_6|NZ_CP053289.1_257610_257847_+	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|237aa|up_5|NZ_CP053289.1_257892_258603_+	pfam08680, DUF1779, TATA-box binding	NA|435aa|up_4|NZ_CP053289.1_258642_259947_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|340aa|up_3|NZ_CP053289.1_260153_261173_+	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|336aa|up_2|NZ_CP053289.1_261273_262281_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|281aa|up_1|NZ_CP053289.1_262461_263304_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|235aa|up_0|NZ_CP053289.1_263303_264008_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|45aa|down_0|NZ_CP053289.1_265217_265352_+	NA	NA|91aa|down_1|NZ_CP053289.1_265660_265933_+	pfam12116, SpoIIID, Stage III sporulation protein D	NA|334aa|down_2|NZ_CP053289.1_266093_267095_+	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|145aa|down_3|NZ_CP053289.1_267525_267960_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|226aa|down_4|NZ_CP053289.1_268304_268982_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|down_5|NZ_CP053289.1_269240_269984_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|234aa|down_6|NZ_CP053289.1_269973_270675_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP053289.1_270787_271555_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|294aa|down_8|NZ_CP053289.1_271795_272677_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|229aa|down_9|NZ_CP053289.1_272694_273381_+	pfam02397, Bac_transf, Bacterial sugar transferase
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	2	1126571-1126678	2	CRISPRCasFinder	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	AAGTTGTGATAGATATATTTGAAAAA	26	1	1	1126597-1126652	NZ_CP053289.1_1126556-1126611	NA	1	1	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA|59aa|up_3|NZ_CP053289.1_1121496_1121673_+,NA|63aa|down_7|NZ_CP053289.1_1135085_1135274_+,NA|71aa|down_9|NZ_CP053289.1_1135467_1135680_-	NA|755aa|up_9|NZ_CP053289.1_1112164_1114429_+	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|298aa|up_8|NZ_CP053289.1_1114585_1115479_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|780aa|up_7|NZ_CP053289.1_1115580_1117920_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|171aa|up_6|NZ_CP053289.1_1117967_1118480_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|728aa|up_5|NZ_CP053289.1_1118690_1120874_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|147aa|up_4|NZ_CP053289.1_1120890_1121331_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|59aa|up_3|NZ_CP053289.1_1121496_1121673_+	NA	NA|424aa|up_2|NZ_CP053289.1_1122027_1123299_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|592aa|up_1|NZ_CP053289.1_1123311_1125087_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|256aa|up_0|NZ_CP053289.1_1125428_1126196_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|214aa|down_0|NZ_CP053289.1_1126768_1127410_-	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family	NA|429aa|down_1|NZ_CP053289.1_1127447_1128734_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|139aa|down_2|NZ_CP053289.1_1129027_1129444_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP053289.1_1129479_1130625_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|372aa|down_4|NZ_CP053289.1_1130641_1131757_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|220aa|down_5|NZ_CP053289.1_1131866_1132526_+	sd00006, TPR, Tetratricopeptide repeat	NA|779aa|down_6|NZ_CP053289.1_1132621_1134958_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|63aa|down_7|NZ_CP053289.1_1135085_1135274_+	NA	NA|43aa|down_8|NZ_CP053289.1_1135292_1135421_+	pfam13056, DUF3918, Protein of unknown function (DUF3918)	NA|71aa|down_9|NZ_CP053289.1_1135467_1135680_-	NA
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	3	2022877-2022987	3	CRISPRCasFinder	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	GTAGGACCAGTTATTCCGATTCCGGTA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA,NA	NA|386aa|up_9|NZ_CP053289.1_2009906_2011064_+	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|139aa|up_8|NZ_CP053289.1_2011227_2011644_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|311aa|up_7|NZ_CP053289.1_2011825_2012758_+	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|326aa|up_6|NZ_CP053289.1_2012989_2013967_+	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|274aa|up_5|NZ_CP053289.1_2014009_2014831_+	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|581aa|up_4|NZ_CP053289.1_2014912_2016655_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|349aa|up_3|NZ_CP053289.1_2016762_2017809_+	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|596aa|up_2|NZ_CP053289.1_2017855_2019643_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|264aa|up_1|NZ_CP053289.1_2019760_2020552_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|514aa|up_0|NZ_CP053289.1_2020755_2022297_+	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|634aa|down_0|NZ_CP053289.1_2023768_2025670_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|175aa|down_1|NZ_CP053289.1_2025676_2026201_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|237aa|down_2|NZ_CP053289.1_2026361_2027072_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|322aa|down_3|NZ_CP053289.1_2027137_2028103_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|298aa|down_4|NZ_CP053289.1_2028226_2029120_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|171aa|down_5|NZ_CP053289.1_2029411_2029924_+	pfam10901, DUF2690, Protein of unknown function (DUF2690)	NA|159aa|down_6|NZ_CP053289.1_2029941_2030418_+	pfam10901, DUF2690, Protein of unknown function (DUF2690)	NA|163aa|down_7|NZ_CP053289.1_2030531_2031020_-	pfam05163, DinB, DinB family	NA|152aa|down_8|NZ_CP053289.1_2031212_2031668_+	pfam12867, DinB_2, DinB superfamily	NA|346aa|down_9|NZ_CP053289.1_2031826_2032864_+	pfam13170, DUF4003, Protein of unknown function (DUF4003)
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	4	2140008-2140158	1	PILER-CR	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	TGGTCCAACCGGTCCAACTGGT	22	0	0	NA	NA	NA	2	2	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA|179aa|up_9|NZ_CP053289.1_2130083_2130620_+,NA|125aa|up_2|NZ_CP053289.1_2135491_2135866_-,NA|48aa|down_0|NZ_CP053289.1_2142514_2142658_-,NA|651aa|down_4|NZ_CP053289.1_2145511_2147464_+,NA|280aa|down_9|NZ_CP053289.1_2151267_2152107_+	NA|179aa|up_9|NZ_CP053289.1_2130083_2130620_+	NA	NA|295aa|up_8|NZ_CP053289.1_2130639_2131524_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|136aa|up_7|NZ_CP053289.1_2131983_2132391_+	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|443aa|up_6|NZ_CP053289.1_2132510_2133839_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|138aa|up_5|NZ_CP053289.1_2133891_2134305_+	pfam03899, ATP-synt_I, ATP synthase I chain	NA|183aa|up_4|NZ_CP053289.1_2134503_2135052_+	PRK04164, PRK04164, hypothetical protein; Provisional	NA|80aa|up_3|NZ_CP053289.1_2135174_2135414_-	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|125aa|up_2|NZ_CP053289.1_2135491_2135866_-	NA	NA|305aa|up_1|NZ_CP053289.1_2136165_2137080_+	sd00006, TPR, Tetratricopeptide repeat	NA|836aa|up_0|NZ_CP053289.1_2137397_2139905_+	pfam03157, Glutenin_hmw, High molecular weight glutenin subunit	NA|48aa|down_0|NZ_CP053289.1_2142514_2142658_-	NA	NA|154aa|down_1|NZ_CP053289.1_2142935_2143397_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|83aa|down_2|NZ_CP053289.1_2143606_2143855_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|374aa|down_3|NZ_CP053289.1_2143918_2145040_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|651aa|down_4|NZ_CP053289.1_2145511_2147464_+	NA	NA|333aa|down_5|NZ_CP053289.1_2148059_2149058_+	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|149aa|down_6|NZ_CP053289.1_2149066_2149513_-	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|280aa|down_7|NZ_CP053289.1_2149530_2150370_-	pfam10978, DUF2785, Protein of unknown function (DUF2785)	NA|241aa|down_8|NZ_CP053289.1_2150493_2151216_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|280aa|down_9|NZ_CP053289.1_2151267_2152107_+	NA
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	5	2588813-2588977	2	PILER-CR	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	AGGAATGAATATTCATTCCTAAACAAAAGTAAA	33	0	0	NA	NA	NA	2	2	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA,NA	NA|177aa|up_9|NZ_CP053289.1_2575053_2575584_+	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|146aa|up_8|NZ_CP053289.1_2575734_2576172_-	pfam10710, DUF2512, Protein of unknown function (DUF2512)	NA|1161aa|up_7|NZ_CP053289.1_2576353_2579836_+	pfam13212, DUF4020, Domain of unknown function (DUF4020)	NA|359aa|up_6|NZ_CP053289.1_2580663_2581740_+	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|391aa|up_5|NZ_CP053289.1_2582022_2583195_+	PRK12463, PRK12463, chorismate synthase; Reviewed	NA|367aa|up_4|NZ_CP053289.1_2583213_2584314_+	PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated	NA|367aa|up_3|NZ_CP053289.1_2584306_2585407_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|430aa|up_2|NZ_CP053289.1_2585424_2586714_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|386aa|up_1|NZ_CP053289.1_2586838_2587996_+	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|189aa|up_0|NZ_CP053289.1_2588225_2588792_+	pfam16295, TetR_C_10, Tetracycline repressor, C-terminal all-alpha domain	NA|1041aa|down_0|NZ_CP053289.1_2589001_2592124_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|542aa|down_1|NZ_CP053289.1_2592423_2594049_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|658aa|down_2|NZ_CP053289.1_2594576_2596550_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|225aa|down_3|NZ_CP053289.1_2596606_2597281_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|221aa|down_4|NZ_CP053289.1_2597391_2598054_-	pfam12952, DUF3841, Domain of unknown function (DUF3841)	NA|276aa|down_5|NZ_CP053289.1_2598211_2599039_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|274aa|down_6|NZ_CP053289.1_2599331_2600153_+	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain	NA|130aa|down_7|NZ_CP053289.1_2600341_2600731_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|228aa|down_8|NZ_CP053289.1_2601181_2601865_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|234aa|down_9|NZ_CP053289.1_2601881_2602583_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins
GCF_013112375.1_ASM1311237v1	NZ_CP053289	Bacillus cereus strain WPySW2 chromosome, complete genome	6	4278260-4278370	4	CRISPRCasFinder	no		cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG	Orphan	CTGCATTTCACCTGTTTTGCTATTTAG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,DEDDh,csa3,RT,WYL,c2c9_V-U4,Cas14u_CAS-V,DinG,cas14j	NA|143aa|up_8|NZ_CP053289.1_4270505_4270934_-,NA|71aa|up_0|NZ_CP053289.1_4275719_4275932_-,NA|282aa|down_3|NZ_CP053289.1_4282661_4283507_+,NA|100aa|down_4|NZ_CP053289.1_4283561_4283861_-	NA|511aa|up_9|NZ_CP053289.1_4268811_4270344_-	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|143aa|up_8|NZ_CP053289.1_4270505_4270934_-	NA	NA|330aa|up_7|NZ_CP053289.1_4271073_4272063_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|245aa|up_6|NZ_CP053289.1_4272072_4272807_-	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|43aa|up_5|NZ_CP053289.1_4273010_4273139_+	pfam14149, YhfH, YhfH-like protein	NA|338aa|up_4|NZ_CP053289.1_4273178_4274192_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|170aa|up_3|NZ_CP053289.1_4274386_4274896_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|118aa|up_2|NZ_CP053289.1_4275029_4275383_+	pfam14470, bPH_3, Bacterial PH domain	NA|102aa|up_1|NZ_CP053289.1_4275409_4275715_-	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown]	NA|71aa|up_0|NZ_CP053289.1_4275719_4275932_-	NA	NA|191aa|down_0|NZ_CP053289.1_4279328_4279901_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|638aa|down_1|NZ_CP053289.1_4280114_4282028_-	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|134aa|down_2|NZ_CP053289.1_4282030_4282432_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|282aa|down_3|NZ_CP053289.1_4282661_4283507_+	NA	NA|100aa|down_4|NZ_CP053289.1_4283561_4283861_-	NA	NA|789aa|down_5|NZ_CP053289.1_4283993_4286360_-	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|451aa|down_6|NZ_CP053289.1_4286601_4287954_+	pfam13218, DUF4026, Protein of unknown function (DUF4026)	NA|474aa|down_7|NZ_CP053289.1_4288010_4289432_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|312aa|down_8|NZ_CP053289.1_4289451_4290387_-	PRK12435, PRK12435, ferrochelatase; Provisional	NA|349aa|down_9|NZ_CP053289.1_4290401_4291448_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated
