The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053346	Sphingomonas sp. AP4-R1 chromosome, complete genome	5252057	677508	754124	5252057	transposase,coat,integrase	Acinetobacter_phage(25.0%)	64	665574:665590	768058:768092
665574:665590	attL	ATCGCCGAAGGCGAGCG	NA	NA	NA	NA
WP_171743252.1|677508_677742_+|transposase	transposase	transposase	NA	NA	NA	NA
665574:665590	attL	ATCGCCGAAGGCGAGCG	NA	NA	NA	NA
WP_171743253.1|677799_678114_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_171743254.1|681257_681635_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_171743255.1|681989_683330_-	hypothetical protein	NA	A0A0P0IY73	Acinetobacter_phage	28.7	4.8e-32
WP_171743256.1|683359_684538_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_171743257.1|684540_685605_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_171743258.1|685601_686990_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_171743259.1|686993_688382_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_171743260.1|688478_688955_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_171743261.1|688979_691313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171743262.1|691429_694360_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_171743263.1|694728_695211_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_171746751.1|695363_695570_+	DUF2306 domain-containing protein	NA	NA	NA	NA	NA
WP_171743264.1|696238_697479_-|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	54.1	5.9e-77
WP_171746752.1|699110_700463_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_171743265.1|700643_701396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171743266.1|701413_704428_-	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	25.9	4.4e-09
WP_171743267.1|704601_704859_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_171743268.1|704944_705169_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_171743269.1|705190_706153_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_171743270.1|707763_708408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746753.1|708564_708750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171743271.1|709118_709907_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_171743272.1|710149_711502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171743273.1|711581_712508_+	phosphotransferase	NA	NA	NA	NA	NA
WP_171743274.1|712599_713070_+	GFA family protein	NA	NA	NA	NA	NA
WP_171743275.1|713132_714149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171743276.1|714846_715152_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_171743277.1|715148_715454_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_021316615.1|716001_716217_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_171743278.1|716213_716408_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_171746754.1|716382_717621_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A077KET4	Ralstonia_phage	39.3	4.7e-66
WP_171743279.1|718131_719148_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_171743280.1|719258_720089_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_171743281.1|720210_721236_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_171743282.1|721324_721942_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_171743283.1|721956_724152_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_171743284.1|724174_726388_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.2	4.4e-30
WP_171743285.1|726392_727343_-	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA	NA
WP_171743286.1|727339_727990_-	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_171743287.1|728320_729214_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_171743288.1|729339_732441_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_171743289.1|732437_733535_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_171743290.1|733611_734232_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_171743291.1|734333_735788_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_171746755.1|735813_736428_-|integrase	site-specific integrase	integrase	A0A0K2CP59	Brevibacillus_phage	26.2	9.3e-07
WP_171743292.1|737109_737622_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_171743293.1|737672_737831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171743294.1|737824_738334_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
738185:738201	attR	ATCGCCGAAGGCGAGCG	NA	NA	NA	NA
WP_171743295.1|738506_739070_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
738185:738201	attR	ATCGCCGAAGGCGAGCG	NA	NA	NA	NA
WP_171743296.1|739069_740131_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_171743297.1|740133_740553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171743298.1|740543_743045_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_171743299.1|743073_743835_-	molecular chaperone	NA	NA	NA	NA	NA
WP_171743300.1|743848_744415_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_171743301.1|744592_745939_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_171743302.1|746043_746643_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_171746756.1|747498_748278_-	HNH endonuclease	NA	A0A1S6KZY3	Salmonella_phage	41.9	8.2e-16
WP_171743303.1|748927_749734_+	matrix metalloproteinase-11	NA	NA	NA	NA	NA
WP_171743304.1|749794_751228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171743305.1|751369_751561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171743306.1|751573_751726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171746757.1|751792_752410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171743307.1|752894_754124_-|integrase	tyrosine-type recombinase/integrase	integrase	B7SYF8	Stenotrophomonas_phage	43.7	2.2e-87
768058:768092	attR	GAAGGACGGTGCTTCGACAGGCTCAGCACGAACGG	NA	NA	NA	NA
>prophage 2
NZ_CP053346	Sphingomonas sp. AP4-R1 chromosome, complete genome	5252057	5065638	5087443	5252057	transposase	Leptospira_phage(22.22%)	25	NA	NA
WP_171746538.1|5065638_5066809_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	36.4	6.3e-36
WP_171746539.1|5066864_5067164_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_171746540.1|5067295_5067574_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_171746541.1|5067837_5068167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171746542.1|5068314_5068506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747221.1|5069897_5070170_-	PEPxxWA-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_171746543.1|5070314_5070536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746544.1|5070758_5071975_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	66.4	7.6e-101
WP_171746545.1|5072025_5073351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746546.1|5073353_5073734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746547.1|5074028_5075154_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.1	5.6e-50
WP_171746548.1|5076234_5076612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746549.1|5076745_5077114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746550.1|5077177_5077837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171746551.1|5078185_5079805_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.1	1.2e-175
WP_171746552.1|5079860_5080175_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	6.4e-20
WP_171746553.1|5080446_5080683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171746554.1|5080679_5080949_+	protein usg	NA	NA	NA	NA	NA
WP_171747222.1|5081136_5081658_-	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	29.8	2.1e-12
WP_171747223.1|5081740_5082217_-	Hsp20 family protein	NA	R9S5E2	Prochlorococcus_phage	48.8	1.1e-23
WP_171746555.1|5082662_5083358_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	48.1	5.0e-17
WP_171746556.1|5083485_5083935_+	NUDIX hydrolase	NA	A0A1C3NEZ8	Phage_NCTB	33.3	1.4e-07
WP_171746557.1|5084022_5084859_-	EamA family transporter	NA	NA	NA	NA	NA
WP_171746558.1|5084889_5085327_-	GFA family protein	NA	NA	NA	NA	NA
WP_171746559.1|5086705_5087443_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP053347	Sphingomonas sp. AP4-R1 plasmid unnamed1, complete sequence	22113	0	8703	22113		uncultured_Caudovirales_phage(71.43%)	11	NA	NA
WP_171747242.1|23_1487_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_171747243.1|1476_2391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747244.1|2387_2876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747245.1|2956_4243_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.9	1.7e-172
WP_171747246.1|4319_5075_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	63.6	1.8e-76
WP_171747267.1|5074_5551_-	GNAT family N-acetyltransferase	NA	A0A2H4J155	uncultured_Caudovirales_phage	41.5	9.7e-20
WP_171747247.1|5531_5963_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.1	2.4e-49
WP_171747248.1|5959_6487_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	44.5	2.2e-25
WP_171747249.1|6498_6828_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_171747250.1|7325_7955_+	transcription elongation protein SprT	NA	A0A088FRV0	Escherichia_phage	41.6	2.5e-39
WP_171747251.1|8019_8703_+	ParA family protein	NA	B0ZSI1	Halomonas_phage	34.7	1.7e-17
>prophage 2
NZ_CP053347	Sphingomonas sp. AP4-R1 plasmid unnamed1, complete sequence	22113	13660	21320	22113		Mycobacterium_phage(50.0%)	7	NA	NA
WP_171747259.1|13660_16708_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	25.9	1.3e-11
WP_171747260.1|16718_17426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747261.1|17428_17785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747262.1|17960_18104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747263.1|18128_18716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171747264.1|18791_19085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171747265.1|19604_21320_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.1	1.2e-08
