assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013122115.1_ASM1312211v1	NZ_CP053396	Helicobacter pylori strain HPY chromosome, complete genome	1	235946-236093	1	CRISPRCasFinder	no	c2c9_V-U4	DEDDh,c2c9_V-U4,cas3,cas14j	Type V-U4	TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTGTAA	45	0	0	NA	NA	NA	1	1	TypeV-U4	DEDDh,c2c9_V-U4,cas3,cas14j	NA|276aa|up_9|NZ_CP053396.1_223056_223884_+,NA|88aa|up_7|NZ_CP053396.1_224309_224573_+,NA|577aa|down_6|NZ_CP053396.1_242422_244153_-	NA|276aa|up_9|NZ_CP053396.1_223056_223884_+	NA	NA|94aa|up_8|NZ_CP053396.1_224028_224310_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|88aa|up_7|NZ_CP053396.1_224309_224573_+	NA	NA|788aa|up_6|NZ_CP053396.1_224574_226938_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|447aa|up_5|NZ_CP053396.1_227244_228585_+	COG3014, COG3014, Uncharacterized protein conserved in bacteria [Function unknown]	NA|322aa|up_4|NZ_CP053396.1_228680_229646_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|406aa|up_3|NZ_CP053396.1_229642_230860_+	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase	NA|191aa|up_2|NZ_CP053396.1_230868_231441_-	PRK09597, PRK09597, lipid A 1-phosphatase LpxE	NA|522aa|up_1|NZ_CP053396.1_231451_233017_-	PRK09598, PRK09598, phosphoethanolamine--lipid A transferase EptA	NA|689aa|up_0|NZ_CP053396.1_233615_235682_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|218aa|down_0|NZ_CP053396.1_236255_236909_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	c2c9_V-U4|420aa|down_1|NZ_CP053396.1_236883_238143_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|427aa|down_2|NZ_CP053396.1_238433_239714_-	PRK05614, gltA, citrate synthase	NA|426aa|down_3|NZ_CP053396.1_239913_241191_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|176aa|down_4|NZ_CP053396.1_241258_241786_+	pfam07509, DUF1523, Protein of unknown function (DUF1523)	NA|219aa|down_5|NZ_CP053396.1_241762_242419_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|577aa|down_6|NZ_CP053396.1_242422_244153_-	NA	NA|92aa|down_7|NZ_CP053396.1_244695_244971_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|740aa|down_8|NZ_CP053396.1_244970_247190_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|118aa|down_9|NZ_CP053396.1_247179_247533_+	pfam02261, Asp_decarbox, Aspartate decarboxylase
GCF_013122115.1_ASM1312211v1	NZ_CP053396	Helicobacter pylori strain HPY chromosome, complete genome	2	335362-335448	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	TTGTTTTTCTTGTTCTAGTTCTAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|198aa|up_9|NZ_CP053396.1_322619_323213_+,NA|99aa|up_4|NZ_CP053396.1_327539_327836_+,NA|287aa|down_7|NZ_CP053396.1_344059_344920_+	NA|198aa|up_9|NZ_CP053396.1_322619_323213_+	NA	NA|621aa|up_8|NZ_CP053396.1_323371_325234_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NZ_CP053396.1_325264_325840_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NZ_CP053396.1_325839_326670_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NZ_CP053396.1_326880_327519_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NZ_CP053396.1_327539_327836_+	NA	NA|628aa|up_3|NZ_CP053396.1_327861_329745_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NZ_CP053396.1_329807_331352_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NZ_CP053396.1_331517_333728_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NZ_CP053396.1_333720_334647_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NZ_CP053396.1_335932_338371_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|613aa|down_1|NZ_CP053396.1_338731_340570_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_2|NZ_CP053396.1_340566_341178_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_3|NZ_CP053396.1_341158_341353_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_4|NZ_CP053396.1_341447_341798_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_5|NZ_CP053396.1_341997_342858_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|144aa|down_6|NZ_CP053396.1_343213_343645_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|287aa|down_7|NZ_CP053396.1_344059_344920_+	NA	NA|456aa|down_8|NZ_CP053396.1_345831_347199_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|414aa|down_9|NZ_CP053396.1_347198_348440_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter
GCF_013122115.1_ASM1312211v1	NZ_CP053396	Helicobacter pylori strain HPY chromosome, complete genome	3	1118483-1118634	1	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	TTTGAAAACAGCAGTTTCAATCAAGGCACTTATAATTTTAATAACA	46	0	0	NA	NA	I-B	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|49aa|up_4|NZ_CP053396.1_1111678_1111825_-,NA|220aa|down_8|NZ_CP053396.1_1132543_1133203_+	NA|380aa|up_9|NZ_CP053396.1_1099868_1101008_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NZ_CP053396.1_1101011_1103039_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|513aa|up_7|NZ_CP053396.1_1103580_1105119_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|540aa|up_6|NZ_CP053396.1_1105140_1106760_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP053396.1_1107604_1109149_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|49aa|up_4|NZ_CP053396.1_1111678_1111825_-	NA	NA|144aa|up_3|NZ_CP053396.1_1112001_1112433_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP053396.1_1112437_1115695_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP053396.1_1115793_1116486_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP053396.1_1116629_1117628_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|367aa|down_0|NZ_CP053396.1_1126100_1127201_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP053396.1_1127266_1127473_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP053396.1_1127634_1128216_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP053396.1_1128212_1129358_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NZ_CP053396.1_1129326_1130277_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP053396.1_1130277_1130820_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP053396.1_1130835_1131747_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP053396.1_1131743_1132547_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP053396.1_1132543_1133203_+	NA	NA|201aa|down_9|NZ_CP053396.1_1133204_1133807_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_013122115.1_ASM1312211v1	NZ_CP053396	Helicobacter pylori strain HPY chromosome, complete genome	4	1476958-1477230	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	AAAAAGAAAGTTTAAAAAAAAGA	23	0	0	NA	NA	NA	5	5	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|154aa|up_8|NZ_CP053396.1_1466616_1467078_-,NA	NA|381aa|up_9|NZ_CP053396.1_1465448_1466591_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|154aa|up_8|NZ_CP053396.1_1466616_1467078_-	NA	NA|299aa|up_7|NZ_CP053396.1_1467472_1468369_+	pfam00892, EamA, EamA-like transporter family	NA|416aa|up_6|NZ_CP053396.1_1468372_1469620_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|184aa|up_5|NZ_CP053396.1_1469698_1470250_+	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|376aa|up_4|NZ_CP053396.1_1470249_1471377_+	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|335aa|up_3|NZ_CP053396.1_1471542_1472547_+	PRK13287, amiF, formamidase; Provisional	NA|191aa|up_2|NZ_CP053396.1_1472998_1473571_-	PRK04056, PRK04056, septum formation inhibitor Maf	NA|848aa|up_1|NZ_CP053396.1_1473572_1476116_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|77aa|up_0|NZ_CP053396.1_1476234_1476465_+	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|694aa|down_0|NZ_CP053396.1_1477268_1479350_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|86aa|down_1|NZ_CP053396.1_1479941_1480199_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|182aa|down_2|NZ_CP053396.1_1480221_1480767_-	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|143aa|down_3|NZ_CP053396.1_1480776_1481205_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|341aa|down_4|NZ_CP053396.1_1481357_1482380_-	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|645aa|down_5|NZ_CP053396.1_1482369_1484304_-	COG0557, VacB, Exoribonuclease R [Transcription]	NA|264aa|down_6|NZ_CP053396.1_1484303_1485095_-	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|197aa|down_7|NZ_CP053396.1_1485102_1485693_-	smart00287, SH3b, Bacterial SH3 domain homologues	NA|349aa|down_8|NZ_CP053396.1_1485701_1486748_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|596aa|down_9|NZ_CP053396.1_1486744_1488532_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
