assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013161625.1_ASM1316162v1	NZ_CP053585	Salmonella enterica strain 2011K-1440 chromosome, complete genome	1	242161-242616	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTCTCGCGGGGAACAC,CGGTTTATCCCCGCTCTCGCGGGGAACAC,CGGTTTATCCCCGCTCTCGCGGGGAACACC	29,29,30	0	0	NA	NA	I-E:I-E:I-E	7,7,2	7	Orphan	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|544aa|up_9|NZ_CP053585.1_227568_229200_-	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional	NA|216aa|up_8|NZ_CP053585.1_229964_230612_-	PRK11111, PRK11111, YchE family NAAT transporter	NA|893aa|up_7|NZ_CP053585.1_231088_233767_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|206aa|up_6|NZ_CP053585.1_233962_234580_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|138aa|up_5|NZ_CP053585.1_235242_235656_+	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|303aa|up_4|NZ_CP053585.1_235787_236696_-	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|338aa|up_3|NZ_CP053585.1_236898_237912_-	PRK10693, PRK10693, two-component system response regulator RssB	NA|302aa|up_2|NZ_CP053585.1_238002_238908_-	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|153aa|up_1|NZ_CP053585.1_239018_239477_+	PRK01617, PRK01617, hypothetical protein; Provisional	NA|281aa|up_0|NZ_CP053585.1_239527_240370_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|226aa|down_0|NZ_CP053585.1_243024_243702_-	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|237aa|down_1|NZ_CP053585.1_243701_244412_-	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|512aa|down_2|NZ_CP053585.1_244408_245944_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1248aa|down_3|NZ_CP053585.1_245940_249684_-	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|466aa|down_4|NZ_CP053585.1_250069_251467_-	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|599aa|down_5|NZ_CP053585.1_251805_253602_+	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|217aa|down_6|NZ_CP053585.1_253594_254245_+	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|461aa|down_7|NZ_CP053585.1_254245_255628_-	PRK10177, PRK10177, YchO/YchP family invasin	NA|118aa|down_8|NZ_CP053585.1_255846_256200_+	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|230aa|down_9|NZ_CP053585.1_256226_256916_-	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
GCF_013161625.1_ASM1316162v1	NZ_CP053585	Salmonella enterica strain 2011K-1440 chromosome, complete genome	2	1416869-1417995	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	18,18,18	18	TypeI-E	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP053585.1_1408734_1409496_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP053585.1_1409476_1410526_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP053585.1_1410522_1411002_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP053585.1_1411001_1411712_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP053585.1_1411730_1412042_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP053585.1_1412232_1412556_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP053585.1_1412606_1413212_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP053585.1_1413198_1414638_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP053585.1_1414647_1415556_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP053585.1_1415807_1416854_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP053585.1_1418079_1418373_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP053585.1_1418375_1419293_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_CP053585.1_1419292_1419997_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_CP053585.1_1419996_1420722_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP053585.1_1420731_1421790_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_CP053585.1_1421812_1422415_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_CP053585.1_1422431_1423967_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|114aa|down_7|NZ_CP053585.1_1424321_1424663_+	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	NA|100aa|down_8|NZ_CP053585.1_1424672_1424972_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|899aa|down_9|NZ_CP053585.1_1425136_1427833_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_013161625.1_ASM1316162v1	NZ_CP053585	Salmonella enterica strain 2011K-1440 chromosome, complete genome	3	1435293-1436481	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTAGCGCGGGGAACAC,CGGTTTATCCCCGCTAGCGCGGGGAACAC,GGTTTATCCCCGCTAGCGCGGGGAACAC	29,29,28	1	1	1435322-1435353	NZ_CP053585.1_1610127-1610096	I-E:I-E:I-E	19,19,18	19	TypeI-E	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cas8e|512aa|up_9|NZ_CP053585.1_1422431_1423967_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|114aa|up_8|NZ_CP053585.1_1424321_1424663_+	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	NA|100aa|up_7|NZ_CP053585.1_1424672_1424972_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|899aa|up_6|NZ_CP053585.1_1425136_1427833_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_5|NZ_CP053585.1_1428216_1429170_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP053585.1_1429257_1429992_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP053585.1_1430007_1431720_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP053585.1_1431719_1433519_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP053585.1_1433945_1434308_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP053585.1_1434397_1435195_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP053585.1_1436777_1437449_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP053585.1_1437585_1438884_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP053585.1_1438966_1440604_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_CP053585.1_1440831_1441623_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NZ_CP053585.1_1441697_1443932_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_5|NZ_CP053585.1_1443983_1445279_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NZ_CP053585.1_1445336_1448093_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_7|NZ_CP053585.1_1448165_1449308_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|447aa|down_8|NZ_CP053585.1_1449385_1450726_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_9|NZ_CP053585.1_1450746_1452087_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_013161625.1_ASM1316162v1	NZ_CP053585	Salmonella enterica strain 2011K-1440 chromosome, complete genome	4	2328849-2328943	4	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GTAGACCCTGATCCAGTAGACCCGGT	26	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|115aa|up_3|NZ_CP053585.1_2322249_2322594_-,NA|70aa|up_2|NZ_CP053585.1_2324459_2324669_+,NA|155aa|down_0|NZ_CP053585.1_2330082_2330547_-,NA|38aa|down_2|NZ_CP053585.1_2331488_2331602_-,NA|160aa|down_4|NZ_CP053585.1_2333016_2333496_-,NA|31aa|down_5|NZ_CP053585.1_2333696_2333789_-	cas3|694aa|up_9|NZ_CP053585.1_2310959_2313041_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|402aa|up_8|NZ_CP053585.1_2313076_2314282_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|up_7|NZ_CP053585.1_2314510_2315902_+	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|571aa|up_6|NZ_CP053585.1_2316022_2317735_+	pfam05170, AsmA, AsmA family	NA|773aa|up_5|NZ_CP053585.1_2317837_2320156_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_4|NZ_CP053585.1_2320167_2321550_-	PRK11462, PRK11462, putative transporter; Provisional	NA|115aa|up_3|NZ_CP053585.1_2322249_2322594_-	NA	NA|70aa|up_2|NZ_CP053585.1_2324459_2324669_+	NA	NA|241aa|up_1|NZ_CP053585.1_2324665_2325388_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|206aa|up_0|NZ_CP053585.1_2326443_2327061_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_CP053585.1_2330082_2330547_-	NA	NA|255aa|down_1|NZ_CP053585.1_2330557_2331322_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|38aa|down_2|NZ_CP053585.1_2331488_2331602_-	NA	NA|227aa|down_3|NZ_CP053585.1_2332221_2332902_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|160aa|down_4|NZ_CP053585.1_2333016_2333496_-	NA	NA|31aa|down_5|NZ_CP053585.1_2333696_2333789_-	NA	NA|21aa|down_6|NZ_CP053585.1_2333908_2333971_-	NF033229, small_MgtR, protein MgtR	NA|909aa|down_7|NZ_CP053585.1_2333992_2336719_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_8|NZ_CP053585.1_2336938_2337634_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_9|NZ_CP053585.1_2338142_2339045_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
