assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	1	61772-61921	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|551aa|down_6|NZ_CP053594.1_69035_70688_-	NA|340aa|up_9|NZ_CP053594.1_49964_50984_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP053594.1_50987_51551_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP053594.1_51767_52799_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP053594.1_52822_53587_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP053594.1_53649_54969_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP053594.1_55035_56034_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP053594.1_56111_57614_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053594.1_57774_58857_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053594.1_58856_59957_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053594.1_60223_61735_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053594.1_62088_62532_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053594.1_62531_65387_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP053594.1_65442_66639_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053594.1_66831_67335_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053594.1_67380_67797_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053594.1_67958_68963_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NZ_CP053594.1_69035_70688_-	NA	NA|151aa|down_7|NZ_CP053594.1_70810_71263_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053594.1_71407_72001_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP053594.1_72071_72785_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	2	1693677-1694503	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	35,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,13,13,9	13	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP053594.1_1692390_1692531_-,NA	NA|434aa|up_9|NZ_CP053594.1_1683087_1684389_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053594.1_1684436_1686671_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053594.1_1686748_1686997_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053594.1_1686996_1687332_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053594.1_1687402_1688194_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053594.1_1688421_1690059_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053594.1_1690146_1691445_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053594.1_1691504_1692377_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053594.1_1692390_1692531_-	NA	NA|224aa|up_0|NZ_CP053594.1_1692669_1693341_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053594.1_1695141_1696620_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053594.1_1696646_1697924_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053594.1_1698242_1699028_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053594.1_1699097_1700552_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053594.1_1700573_1701983_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053594.1_1701960_1702740_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053594.1_1702736_1703597_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053594.1_1703744_1704320_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053594.1_1704336_1704597_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053594.1_1704587_1705859_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	3	1712737-1713009	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|287aa|up_9|NZ_CP053594.1_1702736_1703597_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP053594.1_1703744_1704320_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP053594.1_1704336_1704597_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP053594.1_1704587_1705859_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_CP053594.1_1705936_1706299_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP053594.1_1706617_1708417_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP053594.1_1708416_1710129_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP053594.1_1710202_1710937_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP053594.1_1711201_1711354_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP053594.1_1711546_1712659_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP053594.1_1713090_1714128_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053594.1_1714379_1715288_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053594.1_1715289_1716717_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053594.1_1716716_1717322_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053594.1_1717371_1717695_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053594.1_1717888_1718200_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053594.1_1718218_1718929_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053594.1_1718928_1719408_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053594.1_1719404_1720454_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053594.1_1720434_1721196_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	4	2193029-2193144	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|268aa|up_9|NZ_CP053594.1_2181655_2182459_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP053594.1_2182499_2183402_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP053594.1_2183594_2184785_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP053594.1_2184781_2186041_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP053594.1_2186030_2187659_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP053594.1_2187931_2189290_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP053594.1_2189294_2190371_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP053594.1_2190833_2191484_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP053594.1_2191537_2191792_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP053594.1_2191791_2192922_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP053594.1_2193163_2195449_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP053594.1_2196144_2199897_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP053594.1_2200024_2200747_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP053594.1_2200893_2203521_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP053594.1_2203669_2205358_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP053594.1_2205354_2205978_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP053594.1_2206121_2210516_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP053594.1_2210516_2212166_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP053594.1_2212170_2212947_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP053594.1_2213020_2214205_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	5	2743122-2743245	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP053594.1_2752141_2752231_+	NA|471aa|up_9|NZ_CP053594.1_2732576_2733989_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053594.1_2734545_2734755_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053594.1_2735209_2735836_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053594.1_2735856_2737959_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053594.1_2737971_2738610_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053594.1_2738673_2739342_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053594.1_2739338_2740124_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053594.1_2740127_2740940_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053594.1_2740951_2742556_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053594.1_2742681_2742987_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053594.1_2743559_2744816_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053594.1_2744856_2746230_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053594.1_2746444_2747086_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053594.1_2747125_2748274_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053594.1_2748564_2749776_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053594.1_2749888_2750821_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053594.1_2750817_2751843_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053594.1_2752141_2752231_+	NA	NA|390aa|down_8|NZ_CP053594.1_2752396_2753566_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053594.1_2753800_2754382_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	6	3362452-3362543	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP053594.1_3351527_3351737_-,NA	NA|70aa|up_9|NZ_CP053594.1_3351527_3351737_-	NA	NA|1321aa|up_8|NZ_CP053594.1_3351791_3355754_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053594.1_3355793_3356432_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053594.1_3356719_3357811_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053594.1_3357810_3358503_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053594.1_3358514_3358901_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053594.1_3358908_3359709_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053594.1_3359718_3360309_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053594.1_3360319_3360814_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053594.1_3360834_3362163_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053594.1_3362966_3363563_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053594.1_3363583_3363811_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053594.1_3363848_3365090_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP053594.1_3365382_3366639_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP053594.1_3366899_3367820_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP053594.1_3367819_3368125_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP053594.1_3368276_3368876_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP053594.1_3368872_3371419_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP053594.1_3371418_3372591_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP053594.1_3372720_3373413_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	7	3683345-3683489	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|76aa|up_5|NZ_CP053594.1_3675404_3675632_-,NA|36aa|down_6|NZ_CP053594.1_3691577_3691685_+	NA|98aa|up_9|NZ_CP053594.1_3671665_3671959_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_8|NZ_CP053594.1_3671958_3672072_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_7|NZ_CP053594.1_3672086_3673226_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_6|NZ_CP053594.1_3673241_3674810_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|76aa|up_5|NZ_CP053594.1_3675404_3675632_-	NA	NA|878aa|up_4|NZ_CP053594.1_3675656_3678290_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|639aa|up_3|NZ_CP053594.1_3678307_3680224_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NZ_CP053594.1_3680392_3681115_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NZ_CP053594.1_3681218_3682088_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NZ_CP053594.1_3682087_3683254_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NZ_CP053594.1_3683619_3684837_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NZ_CP053594.1_3684851_3687653_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NZ_CP053594.1_3687953_3688670_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NZ_CP053594.1_3688685_3690452_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NZ_CP053594.1_3690451_3690799_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_5|NZ_CP053594.1_3690792_3691197_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NZ_CP053594.1_3691577_3691685_+	NA	NA|428aa|down_7|NZ_CP053594.1_3691890_3693174_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NZ_CP053594.1_3693563_3694130_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|down_9|NZ_CP053594.1_3694180_3696640_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	8	4028307-4028451	8	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_CP053594.1_4031273_4031357_-	NA|357aa|up_9|NZ_CP053594.1_4013445_4014516_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP053594.1_4014608_4015190_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP053594.1_4015194_4017012_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP053594.1_4017167_4018541_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP053594.1_4018616_4019936_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP053594.1_4020342_4021638_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP053594.1_4021695_4022385_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP053594.1_4022574_4023777_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP053594.1_4023773_4026920_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP053594.1_4027045_4028230_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP053594.1_4028474_4029383_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP053594.1_4029507_4030419_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP053594.1_4031273_4031357_-	NA	NA|95aa|down_3|NZ_CP053594.1_4031842_4032127_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP053594.1_4032198_4032876_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP053594.1_4033133_4033325_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP053594.1_4033374_4033899_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP053594.1_4034081_4034540_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP053594.1_4034659_4035469_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP053594.1_4035485_4036601_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	9	4154787-4154883	9	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|153aa|up_9|NZ_CP053594.1_4146665_4147124_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP053594.1_4147384_4148842_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|186aa|up_7|NZ_CP053594.1_4148898_4149456_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP053594.1_4149367_4149634_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP053594.1_4149867_4150320_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP053594.1_4150329_4150728_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP053594.1_4150730_4151024_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP053594.1_4151075_4152131_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP053594.1_4152201_4152987_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP053594.1_4152931_4154671_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP053594.1_4154886_4155384_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP053594.1_4155559_4156333_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP053594.1_4156518_4156779_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP053594.1_4156781_4157060_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP053594.1_4157215_4157956_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP053594.1_4157926_4158694_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP053594.1_4158899_4159478_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP053594.1_4159717_4162162_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP053594.1_4162204_4162678_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP053594.1_4162831_4163602_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_013166875.1_ASM1316687v1	NZ_CP053594	Escherichia coli strain T7Crystal chromosome, complete genome	10	4369955-4370096	10	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|444aa|up_9|NZ_CP053594.1_4357558_4358890_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP053594.1_4358946_4359234_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP053594.1_4359230_4360517_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP053594.1_4360567_4361509_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP053594.1_4361523_4362294_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP053594.1_4362767_4364282_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP053594.1_4364312_4365455_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP053594.1_4366873_4368427_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP053594.1_4368535_4369321_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP053594.1_4369326_4369917_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP053594.1_4370125_4370521_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP053594.1_4370782_4374004_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP053594.1_4374021_4375170_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP053594.1_4375625_4376447_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP053594.1_4376613_4377528_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP053594.1_4377593_4378544_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP053594.1_4378545_4378995_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP053594.1_4379119_4379614_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP053594.1_4379613_4382430_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP053594.1_4382472_4383414_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
