assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	1	1076618-1077988	1,1	CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	22,22	22	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP053723.1_1075327_1075468_-,NA	NA|434aa|up_9|NZ_CP053723.1_1066024_1067326_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053723.1_1067373_1069608_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053723.1_1069685_1069934_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053723.1_1069933_1070269_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053723.1_1070339_1071131_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053723.1_1071358_1072996_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053723.1_1073083_1074382_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053723.1_1074441_1075314_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053723.1_1075327_1075468_-	NA	NA|224aa|up_0|NZ_CP053723.1_1075606_1076278_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053723.1_1078626_1080105_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053723.1_1080131_1081409_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053723.1_1081727_1082513_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053723.1_1082582_1084037_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053723.1_1084058_1085468_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053723.1_1085445_1086225_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053723.1_1086221_1087082_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053723.1_1087229_1087805_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053723.1_1087821_1088082_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053723.1_1088072_1089344_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	2	1103688-1104082	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,6,6	6	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_CP053723.1_1093687_1094422_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP053723.1_1094686_1094839_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP053723.1_1095032_1097732_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP053723.1_1097829_1099392_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP053723.1_1099388_1099925_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP053723.1_1099936_1100992_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP053723.1_1101002_1101749_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP053723.1_1101730_1102381_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP053723.1_1102377_1103301_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP053723.1_1103297_1103591_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP053723.1_1104163_1105201_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053723.1_1105452_1106361_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053723.1_1106362_1107790_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053723.1_1107789_1108395_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053723.1_1108444_1108768_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053723.1_1108961_1109273_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053723.1_1109291_1110002_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053723.1_1110001_1110481_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053723.1_1110477_1111527_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053723.1_1111507_1112269_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	3	2326368-2326491	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP053723.1_2335387_2335477_+	NA|471aa|up_9|NZ_CP053723.1_2315821_2317234_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053723.1_2317790_2318000_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053723.1_2318455_2319082_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053723.1_2319102_2321205_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053723.1_2321217_2321856_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053723.1_2321919_2322588_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053723.1_2322584_2323370_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053723.1_2323373_2324186_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053723.1_2324197_2325802_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053723.1_2325927_2326233_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053723.1_2326805_2328062_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053723.1_2328102_2329476_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053723.1_2329690_2330332_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053723.1_2330371_2331520_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053723.1_2331810_2333022_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053723.1_2333134_2334067_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053723.1_2334063_2335089_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053723.1_2335387_2335477_+	NA	NA|390aa|down_8|NZ_CP053723.1_2335642_2336812_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053723.1_2336957_2337539_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	4	2994600-2994691	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP053723.1_2983850_2984060_-,NA	NA|70aa|up_9|NZ_CP053723.1_2983850_2984060_-	NA	NA|1321aa|up_8|NZ_CP053723.1_2984114_2988077_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053723.1_2988116_2988755_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053723.1_2989042_2990134_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053723.1_2990133_2990826_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053723.1_2990837_2991224_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053723.1_2991231_2992032_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053723.1_2992041_2992632_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053723.1_2992642_2993137_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053723.1_2993157_2994486_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053723.1_2995114_2995711_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053723.1_2995731_2995959_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053723.1_2995996_2997238_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP053723.1_2997526_2998786_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP053723.1_2999045_2999966_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP053723.1_2999965_3000271_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP053723.1_3000363_3000963_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP053723.1_3000959_3003506_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP053723.1_3003505_3004678_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP053723.1_3004807_3005500_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	5	3258093-3258237	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|330aa|up_9|NZ_CP053723.1_3245991_3246981_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP053723.1_3247377_3248286_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP053723.1_3248477_3250499_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP053723.1_3251077_3251755_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP053723.1_3251747_3252503_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP053723.1_3252489_3253644_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP053723.1_3253640_3254681_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP053723.1_3254767_3256057_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP053723.1_3256115_3256592_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP053723.1_3256743_3258027_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP053723.1_3258260_3260522_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP053723.1_3260704_3262138_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP053723.1_3262213_3263266_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|153aa|down_3|NZ_CP053723.1_3263449_3263908_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|403aa|down_4|NZ_CP053723.1_3263977_3265186_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|332aa|down_5|NZ_CP053723.1_3265781_3266777_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|NZ_CP053723.1_3266931_3267750_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|NZ_CP053723.1_3267750_3268809_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|NZ_CP053723.1_3268811_3269501_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|NZ_CP053723.1_3269500_3270274_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCF_013201195.1_ASM1320119v1	NZ_CP053723	Escherichia coli strain CP66-6_Sichuan chromosome, complete genome	6	3502143-3502239	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_CP053723.1_3493928_3494621_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP053723.1_3494840_3495383_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP053723.1_3495863_3496730_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP053723.1_3496731_3496944_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP053723.1_3497051_3497573_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP053723.1_3497608_3498994_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP053723.1_3499167_3499662_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP053723.1_3499664_3500387_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP053723.1_3500504_3501014_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP053723.1_3501010_3502078_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP053723.1_3502282_3503176_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP053723.1_3503172_3503988_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP053723.1_3503998_3505258_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP053723.1_3505267_3506935_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP053723.1_3507251_3508301_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP053723.1_3508322_3509558_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP053723.1_3509568_3510354_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP053723.1_3510482_3511628_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP053723.1_3511649_3512951_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP053723.1_3513007_3514369_-	PRK08044, PRK08044, allantoinase AllB
