assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267355.1_ASM1326735v1	NZ_CP053985	Achromobacter pestifer strain FDAARGOS_790 chromosome, complete genome	1	291137-291267	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,WYL,cas3	Orphan	GGCGGCAATGGCAACGACATCCT	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,csa3,WYL,cas3	NA|71aa|up_5|NZ_CP053985.1_262914_263127_+,NA	NA|359aa|up_9|NZ_CP053985.1_257680_258757_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|217aa|up_8|NZ_CP053985.1_258792_259443_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|468aa|up_7|NZ_CP053985.1_259468_260872_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|497aa|up_6|NZ_CP053985.1_261399_262890_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|71aa|up_5|NZ_CP053985.1_262914_263127_+	NA	NA|725aa|up_4|NZ_CP053985.1_263101_265276_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|474aa|up_3|NZ_CP053985.1_265283_266705_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|218aa|up_2|NZ_CP053985.1_266712_267366_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|5611aa|up_1|NZ_CP053985.1_267449_284282_+	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|1080aa|up_0|NZ_CP053985.1_284443_287683_+	pfam17892, Cadherin_5, Cadherin-like domain	NA|228aa|down_0|NZ_CP053985.1_291795_292479_+	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|653aa|down_1|NZ_CP053985.1_292496_294455_+	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|280aa|down_2|NZ_CP053985.1_294557_295397_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|357aa|down_3|NZ_CP053985.1_295434_296505_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|442aa|down_4|NZ_CP053985.1_296541_297867_-	cd01948, EAL, EAL domain	NA|658aa|down_5|NZ_CP053985.1_298433_300407_+	cd01948, EAL, EAL domain	NA|511aa|down_6|NZ_CP053985.1_300415_301948_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|240aa|down_7|NZ_CP053985.1_301963_302683_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|496aa|down_8|NZ_CP053985.1_302897_304385_-	PRK00029, PRK00029, YdiU family protein	NA|124aa|down_9|NZ_CP053985.1_304381_304753_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)
GCF_013267355.1_ASM1326735v1	NZ_CP053985	Achromobacter pestifer strain FDAARGOS_790 chromosome, complete genome	2	726945-727048	2	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,csa3,WYL,cas3	Unclear	CGCCGCGCCTTCGGCTCGCTGCCCCCC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,WYL,cas3	NA,NA|151aa|down_5|NZ_CP053985.1_731846_732299_-	NA|255aa|up_9|NZ_CP053985.1_718489_719254_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|95aa|up_8|NZ_CP053985.1_719269_719554_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|330aa|up_7|NZ_CP053985.1_719736_720726_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|310aa|up_6|NZ_CP053985.1_720900_721830_+	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX	NA|209aa|up_5|NZ_CP053985.1_721848_722475_-	COG0062, COG0062, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_4|NZ_CP053985.1_722657_724019_+	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|109aa|up_3|NZ_CP053985.1_724031_724358_+	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|321aa|up_2|NZ_CP053985.1_724417_725380_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|325aa|up_1|NZ_CP053985.1_725383_726358_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	DEDDh|182aa|up_0|NZ_CP053985.1_726371_726917_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|417aa|down_0|NZ_CP053985.1_727130_728381_+	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase	NA|305aa|down_1|NZ_CP053985.1_728377_729292_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|244aa|down_2|NZ_CP053985.1_729412_730144_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|127aa|down_3|NZ_CP053985.1_730279_730660_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|291aa|down_4|NZ_CP053985.1_730958_731831_+	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|151aa|down_5|NZ_CP053985.1_731846_732299_-	NA	NA|449aa|down_6|NZ_CP053985.1_732373_733720_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|433aa|down_7|NZ_CP053985.1_733931_735230_-	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|303aa|down_8|NZ_CP053985.1_735271_736180_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|248aa|down_9|NZ_CP053985.1_736221_736965_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_013267355.1_ASM1326735v1	NZ_CP053985	Achromobacter pestifer strain FDAARGOS_790 chromosome, complete genome	3	2050616-2050757	3	CRISPRCasFinder	no		DEDDh,DinG,csa3,WYL,cas3	Orphan	ACAGCCCCCTCGGGGGGCAGCAAACGCGCGACAGCGCGTGCAGCGTGGGGG	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,WYL,cas3	NA|169aa|up_3|NZ_CP053985.1_2047181_2047688_+,NA	NA|255aa|up_9|NZ_CP053985.1_2041656_2042421_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|240aa|up_8|NZ_CP053985.1_2042413_2043133_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|251aa|up_7|NZ_CP053985.1_2043152_2043905_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|243aa|up_6|NZ_CP053985.1_2043914_2044643_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|569aa|up_5|NZ_CP053985.1_2044648_2046355_+	PRK12843, PRK12843, FAD-dependent oxidoreductase	NA|200aa|up_4|NZ_CP053985.1_2046380_2046980_+	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases	NA|169aa|up_3|NZ_CP053985.1_2047181_2047688_+	NA	NA|447aa|up_2|NZ_CP053985.1_2047744_2049085_-	pfam11299, DUF3100, Protein of unknown function (DUF3100)	NA|312aa|up_1|NZ_CP053985.1_2049376_2050312_+	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|64aa|up_0|NZ_CP053985.1_2050387_2050579_+	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|581aa|down_0|NZ_CP053985.1_2050893_2052636_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|182aa|down_1|NZ_CP053985.1_2052628_2053174_+	pfam06073, DUF934, Bacterial protein of unknown function (DUF934)	NA|266aa|down_2|NZ_CP053985.1_2053170_2053968_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|328aa|down_3|NZ_CP053985.1_2054070_2055054_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|506aa|down_4|NZ_CP053985.1_2055064_2056582_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|262aa|down_5|NZ_CP053985.1_2056578_2057364_+	PRK06224, PRK06224, citryl-CoA lyase	NA|1258aa|down_6|NZ_CP053985.1_2057437_2061211_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|682aa|down_7|NZ_CP053985.1_2061656_2063702_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|319aa|down_8|NZ_CP053985.1_2063755_2064712_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|268aa|down_9|NZ_CP053985.1_2064861_2065665_+	PRK00208, thiG, thiazole synthase; Reviewed
GCF_013267355.1_ASM1326735v1	NZ_CP053985	Achromobacter pestifer strain FDAARGOS_790 chromosome, complete genome	4	4966799-4966999	1	PILER-CR	no		DEDDh,DinG,csa3,WYL,cas3	Orphan	CGCCCACGGCTCCGGTCACTCCGCCGAGCAGGCCCGTGACCGGCGCCAGCA	51	2	6	4966850-4966876|4966850-4966876|4966850-4966876|4966928-4966954|4966928-4966954|4966928-4966954	NZ_CP053985.1_4967003-4967029|NZ_CP053985.1_4967081-4967107|NZ_CP053985.1_4967159-4967185|NZ_CP053985.1_4967003-4967029|NZ_CP053985.1_4967081-4967107|NZ_CP053985.1_4967159-4967185	NA	2	2	Orphan	DEDDh,DinG,csa3,WYL,cas3	NA,NA	NA|484aa|up_9|NZ_CP053985.1_4952958_4954410_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|299aa|up_8|NZ_CP053985.1_4954395_4955292_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|702aa|up_7|NZ_CP053985.1_4955411_4957517_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|335aa|up_6|NZ_CP053985.1_4957580_4958585_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|220aa|up_5|NZ_CP053985.1_4958664_4959324_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|746aa|up_4|NZ_CP053985.1_4959445_4961683_+	cd08505, PBP2_NikA_DppA_OppA_like_18, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|up_3|NZ_CP053985.1_4961679_4962657_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|499aa|up_2|NZ_CP053985.1_4962662_4964159_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|566aa|up_1|NZ_CP053985.1_4964155_4965853_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|182aa|up_0|NZ_CP053985.1_4965895_4966441_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|541aa|down_0|NZ_CP053985.1_4969100_4970723_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|277aa|down_1|NZ_CP053985.1_4971308_4972139_+	COG3300, COG3300, MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]	NA|67aa|down_2|NZ_CP053985.1_4972261_4972462_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|174aa|down_3|NZ_CP053985.1_4972604_4973126_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|154aa|down_4|NZ_CP053985.1_4973071_4973533_+	pfam07811, TadE, TadE-like protein	NA|164aa|down_5|NZ_CP053985.1_4973534_4974026_+	pfam07811, TadE, TadE-like protein	NA|320aa|down_6|NZ_CP053985.1_4974022_4974982_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|454aa|down_7|NZ_CP053985.1_4975047_4976409_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|443aa|down_8|NZ_CP053985.1_4976405_4977734_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|454aa|down_9|NZ_CP053985.1_4977763_4979125_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
GCF_013267355.1_ASM1326735v1	NZ_CP053985	Achromobacter pestifer strain FDAARGOS_790 chromosome, complete genome	5	5179314-5179420	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,WYL,cas3	Orphan	CCCCTGGGGGGAAGCGCGTAGCGCTTCGGGGGG	33	1	2	5179347-5179387|5179347-5179387	NZ_CP053985.1_1547293-1547253|NZ_CP053985.1_1547369-1547329	NA	1	1	Orphan	DEDDh,DinG,csa3,WYL,cas3	NA|227aa|up_9|NZ_CP053985.1_5169716_5170397_+,NA	NA|227aa|up_9|NZ_CP053985.1_5169716_5170397_+	NA	NA|462aa|up_8|NZ_CP053985.1_5170452_5171838_+	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|544aa|up_7|NZ_CP053985.1_5171969_5173601_+	pfam13406, SLT_2, Transglycosylase SLT domain	NA|201aa|up_6|NZ_CP053985.1_5173597_5174200_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|191aa|up_5|NZ_CP053985.1_5174307_5174880_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|62aa|up_4|NZ_CP053985.1_5174889_5175075_+	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal	NA|146aa|up_3|NZ_CP053985.1_5175109_5175547_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|580aa|up_2|NZ_CP053985.1_5175611_5177351_-	cd06232, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|290aa|up_1|NZ_CP053985.1_5177385_5178255_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|up_0|NZ_CP053985.1_5178260_5179184_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|511aa|down_0|NZ_CP053985.1_5179422_5180955_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|604aa|down_1|NZ_CP053985.1_5181009_5182821_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|171aa|down_2|NZ_CP053985.1_5182872_5183385_-	COG5631, COG5631, Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]	NA|103aa|down_3|NZ_CP053985.1_5183740_5184049_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|121aa|down_4|NZ_CP053985.1_5184075_5184438_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|386aa|down_5|NZ_CP053985.1_5184587_5185745_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|424aa|down_6|NZ_CP053985.1_5185976_5187248_-	PRK06333, PRK06333, beta-ketoacyl-ACP synthase	NA|169aa|down_7|NZ_CP053985.1_5187253_5187760_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|158aa|down_8|NZ_CP053985.1_5187838_5188312_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|495aa|down_9|NZ_CP053985.1_5188420_5189905_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
