assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267475.1_ASM1326747v1	NZ_CP053997	Bacillus cereus strain FDAARGOS_780 chromosome, complete genome	1	673189-673316	1	CRISPRCasFinder	no		csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	Orphan	CGTTTTATGATCTTCTAATTGTTTATTTA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	NA|98aa|up_7|NZ_CP053997.1_666232_666526_-,NA|76aa|up_0|NZ_CP053997.1_672009_672237_-,NA|57aa|down_3|NZ_CP053997.1_676054_676225_-,NA|58aa|down_5|NZ_CP053997.1_676481_676655_-,NA|100aa|down_6|NZ_CP053997.1_677001_677301_+,NA|89aa|down_7|NZ_CP053997.1_677385_677652_-,NA|49aa|down_8|NZ_CP053997.1_679695_679842_+	NA|114aa|up_9|NZ_CP053997.1_665534_665876_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|118aa|up_8|NZ_CP053997.1_665877_666231_-	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|98aa|up_7|NZ_CP053997.1_666232_666526_-	NA	NA|385aa|up_6|NZ_CP053997.1_666531_667686_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|248aa|up_5|NZ_CP053997.1_667689_668433_-	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|382aa|up_4|NZ_CP053997.1_668432_669578_-	TIGR01537, portal_protein, phage portal protein, HK97 family	NA|556aa|up_3|NZ_CP053997.1_669586_671254_-	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|104aa|up_2|NZ_CP053997.1_671250_671562_-	pfam05119, Terminase_4, Phage terminase, small subunit	NA|112aa|up_1|NZ_CP053997.1_671687_672023_-	pfam01844, HNH, HNH endonuclease	NA|76aa|up_0|NZ_CP053997.1_672009_672237_-	NA	NA|317aa|down_0|NZ_CP053997.1_673838_674789_-	cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases	NA|181aa|down_1|NZ_CP053997.1_675002_675545_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|161aa|down_2|NZ_CP053997.1_675544_676027_-	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|57aa|down_3|NZ_CP053997.1_676054_676225_-	NA	NA|41aa|down_4|NZ_CP053997.1_676341_676464_-	pfam13137, DUF3983, Protein of unknown function (DUF3983)	NA|58aa|down_5|NZ_CP053997.1_676481_676655_-	NA	NA|100aa|down_6|NZ_CP053997.1_677001_677301_+	NA	NA|89aa|down_7|NZ_CP053997.1_677385_677652_-	NA	NA|49aa|down_8|NZ_CP053997.1_679695_679842_+	NA	NA|191aa|down_9|NZ_CP053997.1_680347_680920_+	cd02223, cupin_Bh2720-like, Bacillus halodurans Bh2720 and related proteins, cupin domain
GCF_013267475.1_ASM1326747v1	NZ_CP053997	Bacillus cereus strain FDAARGOS_780 chromosome, complete genome	2	1960478-1960733	2	CRISPRCasFinder	no		csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	Orphan	TTCTCATGCGGAAGGTAAACATACA	25	0	0	NA	NA	NA	3	3	Orphan	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	NA,NA|124aa|down_3|NZ_CP053997.1_1963823_1964195_-,NA|58aa|down_7|NZ_CP053997.1_1966621_1966795_+	NA|227aa|up_9|NZ_CP053997.1_1950558_1951239_-	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family	NA|229aa|up_8|NZ_CP053997.1_1951251_1951938_-	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family	NA|230aa|up_7|NZ_CP053997.1_1951934_1952624_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|367aa|up_6|NZ_CP053997.1_1952775_1953876_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|296aa|up_5|NZ_CP053997.1_1954041_1954929_+	pfam18573, BclA_C, BclA C-terminal domain	NA|282aa|up_4|NZ_CP053997.1_1955051_1955897_+	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|253aa|up_3|NZ_CP053997.1_1956033_1956792_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|312aa|up_2|NZ_CP053997.1_1956798_1957734_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|387aa|up_1|NZ_CP053997.1_1957876_1959037_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|247aa|up_0|NZ_CP053997.1_1959111_1959852_+	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	NA|298aa|down_0|NZ_CP053997.1_1961429_1962323_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|266aa|down_1|NZ_CP053997.1_1962338_1963136_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|213aa|down_2|NZ_CP053997.1_1963154_1963793_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|124aa|down_3|NZ_CP053997.1_1963823_1964195_-	NA	NA|193aa|down_4|NZ_CP053997.1_1964341_1964920_+	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|133aa|down_5|NZ_CP053997.1_1965100_1965499_+	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like	NA|298aa|down_6|NZ_CP053997.1_1965498_1966392_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|58aa|down_7|NZ_CP053997.1_1966621_1966795_+	NA	NA|609aa|down_8|NZ_CP053997.1_1966914_1968741_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|415aa|down_9|NZ_CP053997.1_1968791_1970036_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]
GCF_013267475.1_ASM1326747v1	NZ_CP053997	Bacillus cereus strain FDAARGOS_780 chromosome, complete genome	3	3365553-3365650	3	CRISPRCasFinder	no		csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	Orphan	AGAAGAAGTAACGGAAGAGGAAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	NA,NA	NA|181aa|up_9|NZ_CP053997.1_3354470_3355013_+	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|503aa|up_8|NZ_CP053997.1_3355024_3356533_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|287aa|up_7|NZ_CP053997.1_3356822_3357683_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|470aa|up_6|NZ_CP053997.1_3357802_3359212_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|134aa|up_5|NZ_CP053997.1_3359232_3359634_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|264aa|up_4|NZ_CP053997.1_3359755_3360547_+	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|218aa|up_3|NZ_CP053997.1_3360594_3361248_+	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|910aa|up_2|NZ_CP053997.1_3361320_3364050_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|123aa|up_1|NZ_CP053997.1_3364340_3364709_+	PRK07756, PRK07756, NADH-quinone oxidoreductase subunit A	NA|173aa|up_0|NZ_CP053997.1_3364699_3365218_+	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB	NA|367aa|down_0|NZ_CP053997.1_3366352_3367453_+	PRK12322, PRK12322, NADH-quinone oxidoreductase subunit D	NA|334aa|down_1|NZ_CP053997.1_3367452_3368454_+	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|140aa|down_2|NZ_CP053997.1_3368479_3368899_+	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|175aa|down_3|NZ_CP053997.1_3368895_3369420_+	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|105aa|down_4|NZ_CP053997.1_3369412_3369727_+	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|621aa|down_5|NZ_CP053997.1_3369756_3371619_+	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|501aa|down_6|NZ_CP053997.1_3371615_3373118_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|507aa|down_7|NZ_CP053997.1_3373119_3374640_+	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|79aa|down_8|NZ_CP053997.1_3374853_3375090_+	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|237aa|down_9|NZ_CP053997.1_3375135_3375846_+	pfam08680, DUF1779, TATA-box binding
GCF_013267475.1_ASM1326747v1	NZ_CP053997	Bacillus cereus strain FDAARGOS_780 chromosome, complete genome	4	5076040-5076141	4	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	Type I-A	ACATTCTCAAAAGAAACCTAAATT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	NA|218aa|up_0|NZ_CP053997.1_5074746_5075400_+,NA|77aa|down_5|NZ_CP053997.1_5081247_5081478_-	NA|176aa|up_9|NZ_CP053997.1_5066017_5066545_+	pfam04229, GrpB, GrpB protein	NA|200aa|up_8|NZ_CP053997.1_5066679_5067279_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|63aa|up_7|NZ_CP053997.1_5067352_5067541_-	TIGR04429, hypothetical_protein_bmyco0001_31490, Phr family secreted Rap phosphatase inhibitor	NA|365aa|up_6|NZ_CP053997.1_5067537_5068632_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|489aa|up_5|NZ_CP053997.1_5068886_5070353_-	PRK00029, PRK00029, YdiU family protein	NA|333aa|up_4|NZ_CP053997.1_5070531_5071530_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	csa3|135aa|up_3|NZ_CP053997.1_5071639_5072044_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|540aa|up_2|NZ_CP053997.1_5072511_5074131_+	pfam01494, FAD_binding_3, FAD binding domain	NA|60aa|up_1|NZ_CP053997.1_5074462_5074642_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|218aa|up_0|NZ_CP053997.1_5074746_5075400_+	NA	NA|315aa|down_0|NZ_CP053997.1_5076704_5077649_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|226aa|down_1|NZ_CP053997.1_5077693_5078371_-	cd06259, YdcF-like, YdcF-like	NA|170aa|down_2|NZ_CP053997.1_5078464_5078974_-	pfam13079, DUF3916, Protein of unknown function (DUF3916)	NA|284aa|down_3|NZ_CP053997.1_5078966_5079818_-	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|415aa|down_4|NZ_CP053997.1_5079903_5081148_+	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	NA|77aa|down_5|NZ_CP053997.1_5081247_5081478_-	NA	NA|378aa|down_6|NZ_CP053997.1_5081734_5082868_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|596aa|down_7|NZ_CP053997.1_5082903_5084691_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|264aa|down_8|NZ_CP053997.1_5084807_5085599_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|514aa|down_9|NZ_CP053997.1_5085814_5087356_+	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed
GCF_013267475.1_ASM1326747v1	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	1	206955-207102	1	CRISPRCasFinder	no	RT	RT,cas14j,csa3	Unclear	ATGGCTATAAGCTTTTATTTCAAATTTTATAGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,cas14k,DEDDh,cas14j	NA|229aa|up_9|NZ_CP053994.1_186873_187560_-,NA|56aa|up_5|NZ_CP053994.1_196802_196970_-,NA|570aa|up_4|NZ_CP053994.1_197908_199618_-,NA|565aa|up_2|NZ_CP053994.1_201628_203323_+,NA|446aa|up_1|NZ_CP053994.1_203366_204704_+,NA|570aa|down_0|NZ_CP053994.1_207955_209665_+,NA|97aa|down_2|NZ_CP053994.1_211767_212058_+,NA|161aa|down_5|NZ_CP053994.1_217783_218266_+,NA|199aa|down_8|NZ_CP053994.1_222148_222745_+,NA|80aa|down_9|NZ_CP053994.1_223688_223928_+	NA|229aa|up_9|NZ_CP053994.1_186873_187560_-	NA	NA|517aa|up_8|NZ_CP053994.1_188098_189649_+	pfam13814, Replic_Relax, Replication-relaxation	RT|606aa|up_7|NZ_CP053994.1_191924_193742_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|325aa|up_6|NZ_CP053994.1_195809_196784_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|56aa|up_5|NZ_CP053994.1_196802_196970_-	NA	NA|570aa|up_4|NZ_CP053994.1_197908_199618_-	NA	NA|160aa|up_3|NZ_CP053994.1_200660_201140_+	pfam02517, Abi, CAAX protease self-immunity	NA|565aa|up_2|NZ_CP053994.1_201628_203323_+	NA	NA|446aa|up_1|NZ_CP053994.1_203366_204704_+	NA	NA|566aa|up_0|NZ_CP053994.1_204903_206601_-	pfam01371, Trp_repressor, Trp repressor protein	NA|570aa|down_0|NZ_CP053994.1_207955_209665_+	NA	NA|369aa|down_1|NZ_CP053994.1_210658_211765_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|97aa|down_2|NZ_CP053994.1_211767_212058_+	NA	NA|135aa|down_3|NZ_CP053994.1_212098_212503_+	pfam12648, TcpE, TcpE family	RT|611aa|down_4|NZ_CP053994.1_214813_216646_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|161aa|down_5|NZ_CP053994.1_217783_218266_+	NA	NA|867aa|down_6|NZ_CP053994.1_218298_220899_+	pfam03154, Atrophin-1, Atrophin-1 family	NA|404aa|down_7|NZ_CP053994.1_220926_222138_+	cd16891, CwlT-like, CwlT-like N-terminal lysozyme domain and similar domains	NA|199aa|down_8|NZ_CP053994.1_222148_222745_+	NA	NA|80aa|down_9|NZ_CP053994.1_223688_223928_+	NA
