assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267615.1_ASM1326761v1	NZ_CP054012	Parabacteroides distasonis strain FDAARGOS_759 chromosome, complete genome	1	1121196-1121306	1	CRISPRCasFinder	no		RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	Orphan	ATTTAAAAGTTTAAATCGGGCTTGCGT	27	0	0	NA	NA	NA	1	1	Orphan	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	NA|323aa|up_3|NZ_CP054012.1_1115027_1115996_+,NA|270aa|up_0|NZ_CP054012.1_1120258_1121068_-,NA|225aa|down_0|NZ_CP054012.1_1121372_1122047_-	NA|532aa|up_9|NZ_CP054012.1_1107591_1109187_+	pfam12741, SusD-like, Susd and RagB outer membrane lipoprotein	NA|134aa|up_8|NZ_CP054012.1_1109276_1109678_+	PRK04460, PRK04460, nickel-responsive transcriptional regulator NikR	NA|624aa|up_7|NZ_CP054012.1_1109770_1111642_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|132aa|up_6|NZ_CP054012.1_1111773_1112169_+	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|705aa|up_5|NZ_CP054012.1_1112292_1114407_+	TIGR00238, L-lysine_23-aminomutase, KamA family protein	NA|181aa|up_4|NZ_CP054012.1_1114478_1115021_+	COG4739, COG4739, Uncharacterized protein containing a ferredoxin domain [Function unknown]	NA|323aa|up_3|NZ_CP054012.1_1115027_1115996_+	NA	NA|432aa|up_2|NZ_CP054012.1_1116147_1117443_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|863aa|up_1|NZ_CP054012.1_1117497_1120086_-	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|270aa|up_0|NZ_CP054012.1_1120258_1121068_-	NA	NA|225aa|down_0|NZ_CP054012.1_1121372_1122047_-	NA	NA|444aa|down_1|NZ_CP054012.1_1122068_1123400_-	pfam01640, Peptidase_C10, Peptidase C10 family	NA|634aa|down_2|NZ_CP054012.1_1123682_1125584_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|1121aa|down_3|NZ_CP054012.1_1125611_1128974_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|163aa|down_4|NZ_CP054012.1_1129611_1130100_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|228aa|down_5|NZ_CP054012.1_1130235_1130919_+	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|163aa|down_6|NZ_CP054012.1_1131073_1131562_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|792aa|down_7|NZ_CP054012.1_1131612_1133988_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|266aa|down_8|NZ_CP054012.1_1134229_1135027_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|592aa|down_9|NZ_CP054012.1_1135044_1136820_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]
GCF_013267615.1_ASM1326761v1	NZ_CP054012	Parabacteroides distasonis strain FDAARGOS_759 chromosome, complete genome	2	1784024-1784725	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	Type I-U,Type I-C, Type I-U?	GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC,GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC,GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	10,10,10	10	TypeI-U,TypeI-C,TypeI-U?	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	NA,NA	NA|292aa|up_9|NZ_CP054012.1_1770995_1771871_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|343aa|up_8|NZ_CP054012.1_1771890_1772919_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|450aa|up_7|NZ_CP054012.1_1772908_1774258_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	cas3|715aa|up_6|NZ_CP054012.1_1776292_1778437_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|253aa|up_5|NZ_CP054012.1_1778433_1779192_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|559aa|up_4|NZ_CP054012.1_1779193_1780870_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|322aa|up_3|NZ_CP054012.1_1780890_1781856_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|223aa|up_2|NZ_CP054012.1_1781866_1782535_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|341aa|up_1|NZ_CP054012.1_1782531_1783554_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP054012.1_1783563_1783854_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|159aa|down_0|NZ_CP054012.1_1784946_1785423_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|960aa|down_1|NZ_CP054012.1_1785574_1788454_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|331aa|down_2|NZ_CP054012.1_1788523_1789516_-	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|511aa|down_3|NZ_CP054012.1_1789538_1791071_-	cd16144, ARS_like, uncharacterized arylsulfatase subfamily	NA|154aa|down_4|NZ_CP054012.1_1791252_1791714_-	pfam14126, DUF4293, Domain of unknown function (DUF4293)	NA|111aa|down_5|NZ_CP054012.1_1791790_1792123_-	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6	NA|269aa|down_6|NZ_CP054012.1_1792147_1792954_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|142aa|down_7|NZ_CP054012.1_1793020_1793446_-	COG4747, COG4747, ACT domain-containing protein [General function prediction only]	NA|434aa|down_8|NZ_CP054012.1_1793466_1794768_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|270aa|down_9|NZ_CP054012.1_1794874_1795684_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)
GCF_013267615.1_ASM1326761v1	NZ_CP054012	Parabacteroides distasonis strain FDAARGOS_759 chromosome, complete genome	3	2525672-2526791	3,2,3	CRISPRCasFinder,PILER-CR,PILER-CR	no	cas2,cas1,cas9	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	Type II-A,Type II-B, or Type II-C?,Type II-C, Type II-B	GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC,AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC,GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	47,48,47	0	0	NA	NA	NA:NA:NA	14,11,11	14	TypeII-A,TypeII-B,TypeII-C,orTypeII-C?,TypeII-B	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	NA,NA	NA|160aa|up_9|NZ_CP054012.1_2514031_2514511_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|302aa|up_8|NZ_CP054012.1_2514665_2515571_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|340aa|up_7|NZ_CP054012.1_2515575_2516595_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|569aa|up_6|NZ_CP054012.1_2516599_2518306_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|428aa|up_5|NZ_CP054012.1_2518357_2519641_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|406aa|up_4|NZ_CP054012.1_2519668_2520886_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|167aa|up_3|NZ_CP054012.1_2520991_2521492_-	PRK00522, tpx, thiol peroxidase	NA|424aa|up_2|NZ_CP054012.1_2521657_2522929_+	pfam02646, RmuC, RmuC family	NA|528aa|up_1|NZ_CP054012.1_2522925_2524509_+	PRK11588, PRK11588, putative basic amino acid antiporter YfcC	NA|100aa|up_0|NZ_CP054012.1_2524505_2524805_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	cas2|111aa|down_0|NZ_CP054012.1_2526898_2527231_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|310aa|down_1|NZ_CP054012.1_2527232_2528162_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1425aa|down_2|NZ_CP054012.1_2528276_2532551_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|787aa|down_3|NZ_CP054012.1_2534715_2537076_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|256aa|down_4|NZ_CP054012.1_2537152_2537920_+	cd18109, SpoU-like_RNA-MTase, SAM-dependent RNA methylase related to SpoU-TrmH	NA|262aa|down_5|NZ_CP054012.1_2538196_2538982_-	pfam14129, DUF4296, Domain of unknown function (DUF4296)	NA|206aa|down_6|NZ_CP054012.1_2538982_2539600_-	PRK14788, PRK14788, lipoprotein signal peptidase; Provisional	NA|127aa|down_7|NZ_CP054012.1_2539600_2539981_-	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA	NA|1141aa|down_8|NZ_CP054012.1_2540148_2543571_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|736aa|down_9|NZ_CP054012.1_2543796_2546004_+	pfam02065, Melibiase, Melibiase
GCF_013267615.1_ASM1326761v1	NZ_CP054012	Parabacteroides distasonis strain FDAARGOS_759 chromosome, complete genome	4	4157090-4157180	4	CRISPRCasFinder	no		RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	Orphan	AGAGATGGGGCACGCCCCGTCTC	23	0	0	NA	NA	NA	1	1	Orphan	RT,PrimPol,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	NA|339aa|up_5|NZ_CP054012.1_4144960_4145977_+,NA|302aa|down_3|NZ_CP054012.1_4164155_4165061_+	NA|300aa|up_9|NZ_CP054012.1_4138748_4139648_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|517aa|up_8|NZ_CP054012.1_4139778_4141329_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|734aa|up_7|NZ_CP054012.1_4141309_4143511_+	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|424aa|up_6|NZ_CP054012.1_4143546_4144818_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|339aa|up_5|NZ_CP054012.1_4144960_4145977_+	NA	NA|150aa|up_4|NZ_CP054012.1_4145961_4146411_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|425aa|up_3|NZ_CP054012.1_4146507_4147782_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|352aa|up_2|NZ_CP054012.1_4147785_4148841_-	cd05651, M20_ArgE_DapE-like, M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|307aa|up_1|NZ_CP054012.1_4148842_4149763_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|1360aa|up_0|NZ_CP054012.1_4149966_4154046_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|843aa|down_0|NZ_CP054012.1_4157230_4159759_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|733aa|down_1|NZ_CP054012.1_4159781_4161980_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|317aa|down_2|NZ_CP054012.1_4162128_4163079_+	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|302aa|down_3|NZ_CP054012.1_4164155_4165061_+	NA	NA|189aa|down_4|NZ_CP054012.1_4165418_4165985_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|287aa|down_5|NZ_CP054012.1_4166082_4166943_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|73aa|down_6|NZ_CP054012.1_4167149_4167368_+	pfam14055, NVEALA, NVEALA protein	NA|386aa|down_7|NZ_CP054012.1_4167487_4168645_+	pfam13970, DUF4221, Domain of unknown function (DUF4221)	NA|354aa|down_8|NZ_CP054012.1_4168655_4169717_+	pfam15869, TolB_like, TolB-like 6-blade propeller-like	NA|678aa|down_9|NZ_CP054012.1_4169735_4171769_+	pfam01841, Transglut_core, Transglutaminase-like superfamily
