assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013282275.1_ASM1328227v1	NZ_CP042878	Escherichia coli strain NMBU_W05E18 chromosome, complete genome	1	1238510-1239453	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	Orphan	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	NA,NA	NA|919aa|up_9|NZ_CP042878.1_1225102_1227859_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP042878.1_1227915_1229217_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP042878.1_1229264_1231499_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP042878.1_1231576_1231825_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP042878.1_1231824_1232160_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP042878.1_1232231_1233023_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP042878.1_1233250_1234888_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP042878.1_1234975_1236274_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP042878.1_1236333_1237206_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP042878.1_1237499_1238171_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP042878.1_1240090_1241569_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP042878.1_1241595_1242873_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP042878.1_1243191_1243977_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP042878.1_1244046_1245501_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP042878.1_1245522_1246932_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP042878.1_1246909_1247689_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP042878.1_1247685_1248546_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP042878.1_1248645_1249994_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP042878.1_1250128_1250704_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP042878.1_1250720_1250981_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_013282275.1_ASM1328227v1	NZ_CP042878	Escherichia coli strain NMBU_W05E18 chromosome, complete genome	2	1266591-1267229	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	Type I-E	GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGNCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP042878.1_1256586_1257321_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP042878.1_1257585_1257738_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP042878.1_1257932_1260632_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP042878.1_1260729_1262292_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP042878.1_1262288_1262825_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP042878.1_1262839_1263895_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP042878.1_1263905_1264652_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP042878.1_1264633_1265284_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP042878.1_1265280_1266204_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP042878.1_1266200_1266494_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP042878.1_1267310_1268348_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP042878.1_1268599_1269508_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP042878.1_1269509_1270937_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP042878.1_1270936_1271542_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP042878.1_1271591_1271915_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP042878.1_1272108_1272420_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP042878.1_1272438_1273149_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP042878.1_1273148_1273628_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP042878.1_1273624_1274674_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP042878.1_1274654_1275416_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013282275.1_ASM1328227v1	NZ_CP042878	Escherichia coli strain NMBU_W05E18 chromosome, complete genome	3	2986570-2986683	3	PILER-CR	no		WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	NA|34aa|up_7|NZ_CP042878.1_2980884_2980986_-,NA|50aa|up_3|NZ_CP042878.1_2984509_2984659_-,NA|101aa|up_1|NZ_CP042878.1_2985106_2985409_-,NA|94aa|down_9|NZ_CP042878.1_2991748_2992030_+	NA|57aa|up_9|NZ_CP042878.1_2980262_2980433_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_8|NZ_CP042878.1_2980432_2980888_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_7|NZ_CP042878.1_2980884_2980986_-	NA	NA|266aa|up_6|NZ_CP042878.1_2981102_2981900_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|184aa|up_5|NZ_CP042878.1_2981909_2982461_-	PRK09818, PRK09818, kinase inhibitor	NA|509aa|up_4|NZ_CP042878.1_2982925_2984452_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|up_3|NZ_CP042878.1_2984509_2984659_-	NA	NA|111aa|up_2|NZ_CP042878.1_2984706_2985039_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP042878.1_2985106_2985409_-	NA	NA|234aa|up_0|NZ_CP042878.1_2985405_2986107_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP042878.1_2987119_2987659_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP042878.1_2987728_2987959_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|252aa|down_2|NZ_CP042878.1_2987997_2988753_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|97aa|down_3|NZ_CP042878.1_2989264_2989555_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP042878.1_2989630_2989927_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP042878.1_2989932_2990718_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP042878.1_2990714_2991395_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP042878.1_2991391_2991574_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP042878.1_2991546_2991738_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP042878.1_2991748_2992030_+	NA
GCF_013282275.1_ASM1328227v1	NZ_CP042878	Escherichia coli strain NMBU_W05E18 chromosome, complete genome	4	3305282-3305373	3	CRISPRCasFinder	no		WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	NA|70aa|up_9|NZ_CP042878.1_3294532_3294742_-,NA	NA|70aa|up_9|NZ_CP042878.1_3294532_3294742_-	NA	NA|1321aa|up_8|NZ_CP042878.1_3294796_3298759_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP042878.1_3298798_3299437_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP042878.1_3299724_3300816_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP042878.1_3300815_3301508_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP042878.1_3301519_3301906_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP042878.1_3301913_3302714_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP042878.1_3302723_3303314_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP042878.1_3303324_3303819_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP042878.1_3303839_3305168_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP042878.1_3305796_3306393_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP042878.1_3306413_3306641_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP042878.1_3306678_3307920_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP042878.1_3308211_3309468_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP042878.1_3309727_3310648_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP042878.1_3310647_3310953_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP042878.1_3311104_3311704_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP042878.1_3311700_3314247_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP042878.1_3314246_3315419_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP042878.1_3315548_3316241_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013282275.1_ASM1328227v1	NZ_CP042878	Escherichia coli strain NMBU_W05E18 chromosome, complete genome	5	4392295-4392428	4	PILER-CR	no		WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	ATCACCAATATTGAAAAT	18	0	0	NA	NA	NA	2	2	Orphan	WYL,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,c2c9_V-U4	NA,NA	NA|283aa|up_9|NZ_CP042878.1_4382834_4383683_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP042878.1_4383983_4384217_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP042878.1_4384302_4384782_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP042878.1_4384973_4386836_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP042878.1_4386828_4387359_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP042878.1_4387466_4388798_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP042878.1_4388856_4389144_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP042878.1_4389140_4390427_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP042878.1_4390477_4391419_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP042878.1_4391433_4392204_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP042878.1_4392676_4394191_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP042878.1_4394221_4395364_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP042878.1_4395492_4396710_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP042878.1_4396783_4398337_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP042878.1_4398445_4399231_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP042878.1_4399236_4399827_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP042878.1_4399945_4400341_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP042878.1_4400601_4403820_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP042878.1_4403837_4404986_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP042878.1_4405441_4406263_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
