assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	1	1524664-1525347	1	PILER-CR	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	GTGTTGCCAGTGGCAACAG	19	0	0	NA	NA	NA	9	9	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA|225aa|up_8|NZ_CP045551.1_1516428_1517103_+,NA|107aa|up_6|NZ_CP045551.1_1519056_1519377_-,NA|66aa|up_4|NZ_CP045551.1_1521527_1521725_-,NA|434aa|down_1|NZ_CP045551.1_1526065_1527367_-,NA|78aa|down_6|NZ_CP045551.1_1531158_1531392_-,NA|176aa|down_7|NZ_CP045551.1_1531384_1531912_-	NA|378aa|up_9|NZ_CP045551.1_1515118_1516252_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|225aa|up_8|NZ_CP045551.1_1516428_1517103_+	NA	NA|656aa|up_7|NZ_CP045551.1_1517092_1519060_-	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|107aa|up_6|NZ_CP045551.1_1519056_1519377_-	NA	NA|637aa|up_5|NZ_CP045551.1_1519496_1521407_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|66aa|up_4|NZ_CP045551.1_1521527_1521725_-	NA	NA|129aa|up_3|NZ_CP045551.1_1522142_1522529_-	PRK11917, PRK11917, bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed	NA|169aa|up_2|NZ_CP045551.1_1522727_1523234_-	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional	NA|182aa|up_1|NZ_CP045551.1_1523248_1523794_-	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|242aa|up_0|NZ_CP045551.1_1523790_1524516_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|241aa|down_0|NZ_CP045551.1_1525350_1526073_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|434aa|down_1|NZ_CP045551.1_1526065_1527367_-	NA	NA|232aa|down_2|NZ_CP045551.1_1527363_1528059_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|569aa|down_3|NZ_CP045551.1_1528091_1529798_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|115aa|down_4|NZ_CP045551.1_1529799_1530144_-	pfam03869, Arc, Arc-like DNA binding domain	NA|335aa|down_5|NZ_CP045551.1_1530154_1531159_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|78aa|down_6|NZ_CP045551.1_1531158_1531392_-	NA	NA|176aa|down_7|NZ_CP045551.1_1531384_1531912_-	NA	NA|449aa|down_8|NZ_CP045551.1_1532086_1533433_-	TIGR00665, DnaB, replicative DNA helicase	NA|233aa|down_9|NZ_CP045551.1_1533429_1534128_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	2	1526530-1526694	1,2	CRT,PILER-CR	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	CTGAGTTCGGATTCCGAACT,AAATCTCGCTGAGTTCGGATTCCGAACTCAG	20,31	0	0	NA	NA	NA:NA	3,2	3	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA|225aa|up_9|NZ_CP045551.1_1516428_1517103_+,NA|107aa|up_7|NZ_CP045551.1_1519056_1519377_-,NA|66aa|up_5|NZ_CP045551.1_1521527_1521725_-,NA|78aa|down_4|NZ_CP045551.1_1531158_1531392_-,NA|176aa|down_5|NZ_CP045551.1_1531384_1531912_-,NA|81aa|down_8|NZ_CP045551.1_1534127_1534370_-,NA|251aa|down_9|NZ_CP045551.1_1534366_1535119_-	NA|225aa|up_9|NZ_CP045551.1_1516428_1517103_+	NA	NA|656aa|up_8|NZ_CP045551.1_1517092_1519060_-	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|107aa|up_7|NZ_CP045551.1_1519056_1519377_-	NA	NA|637aa|up_6|NZ_CP045551.1_1519496_1521407_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|66aa|up_5|NZ_CP045551.1_1521527_1521725_-	NA	NA|129aa|up_4|NZ_CP045551.1_1522142_1522529_-	PRK11917, PRK11917, bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed	NA|169aa|up_3|NZ_CP045551.1_1522727_1523234_-	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional	NA|182aa|up_2|NZ_CP045551.1_1523248_1523794_-	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|242aa|up_1|NZ_CP045551.1_1523790_1524516_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|241aa|up_0|NZ_CP045551.1_1525350_1526073_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|232aa|down_0|NZ_CP045551.1_1527363_1528059_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|569aa|down_1|NZ_CP045551.1_1528091_1529798_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|115aa|down_2|NZ_CP045551.1_1529799_1530144_-	pfam03869, Arc, Arc-like DNA binding domain	NA|335aa|down_3|NZ_CP045551.1_1530154_1531159_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|78aa|down_4|NZ_CP045551.1_1531158_1531392_-	NA	NA|176aa|down_5|NZ_CP045551.1_1531384_1531912_-	NA	NA|449aa|down_6|NZ_CP045551.1_1532086_1533433_-	TIGR00665, DnaB, replicative DNA helicase	NA|233aa|down_7|NZ_CP045551.1_1533429_1534128_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|81aa|down_8|NZ_CP045551.1_1534127_1534370_-	NA	NA|251aa|down_9|NZ_CP045551.1_1534366_1535119_-	NA
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	3	1753729-1753836	1	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	TCCTCTCTCCTGAGGGTGGCGTATTTG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA|64aa|up_7|NZ_CP045551.1_1745082_1745274_+,NA|98aa|down_6|NZ_CP045551.1_1761232_1761526_+	NA|234aa|up_9|NZ_CP045551.1_1742959_1743661_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|441aa|up_8|NZ_CP045551.1_1743689_1745012_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|64aa|up_7|NZ_CP045551.1_1745082_1745274_+	NA	NA|247aa|up_6|NZ_CP045551.1_1745434_1746175_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_5|NZ_CP045551.1_1746222_1747008_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|232aa|up_4|NZ_CP045551.1_1747044_1747740_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|372aa|up_3|NZ_CP045551.1_1747746_1748862_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|385aa|up_2|NZ_CP045551.1_1748873_1750028_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|681aa|up_1|NZ_CP045551.1_1750040_1752083_+	PRK05683, flgK, flagellar hook-associated protein FlgK; Validated	NA|522aa|up_0|NZ_CP045551.1_1752096_1753662_+	PRK12717, flgL, flagellar hook-associated protein 3	NA|310aa|down_0|NZ_CP045551.1_1754162_1755092_+	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|443aa|down_1|NZ_CP045551.1_1755514_1756843_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|566aa|down_2|NZ_CP045551.1_1757182_1758880_+	PRK08869, PRK08869, polar flagellin E	NA|117aa|down_3|NZ_CP045551.1_1758956_1759307_+	pfam03646, FlaG, FlaG protein	NA|452aa|down_4|NZ_CP045551.1_1759385_1760741_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|132aa|down_5|NZ_CP045551.1_1760818_1761214_+	PRK05685, fliS, flagellar export chaperone FliS	NA|98aa|down_6|NZ_CP045551.1_1761232_1761526_+	NA	NA|492aa|down_7|NZ_CP045551.1_1761696_1763172_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|443aa|down_8|NZ_CP045551.1_1763593_1764922_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|406aa|down_9|NZ_CP045551.1_1765071_1766289_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	4	3747640-3747712	2	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	GCCTGTGCCGGCCTCTTCGCGGG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA|158aa|up_3|NZ_CP045551.1_3744928_3745402_+,NA|190aa|up_0|NZ_CP045551.1_3747063_3747633_+,NA	NA|52aa|up_9|NZ_CP045551.1_3739242_3739398_-	pfam11661, DUF2986, Protein of unknown function (DUF2986)	NA|585aa|up_8|NZ_CP045551.1_3739608_3741363_+	NF012179, CptA, phosphoethanolamine transferase CptA	NA|177aa|up_7|NZ_CP045551.1_3741373_3741904_-	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component	NA|547aa|up_6|NZ_CP045551.1_3741915_3743556_-	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only]	NA|210aa|up_5|NZ_CP045551.1_3743555_3744185_-	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown]	NA|199aa|up_4|NZ_CP045551.1_3744181_3744778_-	pfam04403, PqiA, Paraquat-inducible protein A	NA|158aa|up_3|NZ_CP045551.1_3744928_3745402_+	NA	NA|304aa|up_2|NZ_CP045551.1_3745446_3746358_-	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily	NA|129aa|up_1|NZ_CP045551.1_3746635_3747022_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|190aa|up_0|NZ_CP045551.1_3747063_3747633_+	NA	NA|443aa|down_0|NZ_CP045551.1_3747760_3749089_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|560aa|down_1|NZ_CP045551.1_3749606_3751286_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|140aa|down_2|NZ_CP045551.1_3751547_3751967_-	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|309aa|down_3|NZ_CP045551.1_3752042_3752969_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|1600aa|down_4|NZ_CP045551.1_3753241_3758041_+	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|835aa|down_5|NZ_CP045551.1_3758048_3760553_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|233aa|down_6|NZ_CP045551.1_3760738_3761437_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|924aa|down_7|NZ_CP045551.1_3761653_3764425_+	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|162aa|down_8|NZ_CP045551.1_3764452_3764938_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|288aa|down_9|NZ_CP045551.1_3765137_3766001_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	5	5845251-5845333	3	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	ACCACCTTCTTACAGTCAAGCTA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA,NA	NA|194aa|up_9|NZ_CP045551.1_5832671_5833253_-	pfam06821, Ser_hydrolase, Serine hydrolase	NA|330aa|up_8|NZ_CP045551.1_5833463_5834453_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|291aa|up_7|NZ_CP045551.1_5834456_5835329_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|273aa|up_6|NZ_CP045551.1_5835340_5836159_-	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|336aa|up_5|NZ_CP045551.1_5836344_5837352_-	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|61aa|up_4|NZ_CP045551.1_5837402_5837585_-	COG5583, COG5583, Uncharacterized small protein [Function unknown]	NA|1018aa|up_3|NZ_CP045551.1_5837818_5840872_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|up_2|NZ_CP045551.1_5840868_5841936_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|363aa|up_1|NZ_CP045551.1_5841932_5843021_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|264aa|up_0|NZ_CP045551.1_5843539_5844331_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|298aa|down_0|NZ_CP045551.1_5845581_5846475_-	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|307aa|down_1|NZ_CP045551.1_5846471_5847392_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|381aa|down_2|NZ_CP045551.1_5847388_5848531_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|365aa|down_3|NZ_CP045551.1_5848601_5849696_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|366aa|down_4|NZ_CP045551.1_5849852_5850950_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|454aa|down_5|NZ_CP045551.1_5851118_5852480_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|453aa|down_6|NZ_CP045551.1_5852528_5853887_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|459aa|down_7|NZ_CP045551.1_5854461_5855838_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|433aa|down_8|NZ_CP045551.1_5855985_5857284_-	PRK05279, PRK05279, N-acetylglutamate synthase; Validated	NA|381aa|down_9|NZ_CP045551.1_5857408_5858551_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional
GCF_013305625.1_ASM1330562v1	NZ_CP045551	Pseudomonas putida strain 15420352 chromosome, complete genome	6	5937957-5938058	4	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,DinG,cas3	Orphan	GCGGGTTTACCCGCGAAAGGACC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,DinG,cas3	NA,NA	NA|331aa|up_9|NZ_CP045551.1_5921153_5922146_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|1683aa|up_8|NZ_CP045551.1_5922385_5927434_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|209aa|up_7|NZ_CP045551.1_5927488_5928115_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|121aa|up_6|NZ_CP045551.1_5928187_5928550_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|329aa|up_5|NZ_CP045551.1_5928730_5929717_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|596aa|up_4|NZ_CP045551.1_5929945_5931733_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|98aa|up_3|NZ_CP045551.1_5932422_5932716_+	pfam11275, DUF3077, Protein of unknown function (DUF3077)	NA|210aa|up_2|NZ_CP045551.1_5933065_5933695_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|304aa|up_1|NZ_CP045551.1_5933923_5934835_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|421aa|up_0|NZ_CP045551.1_5935042_5936305_+	pfam03573, OprD, outer membrane porin, OprD family	NA|661aa|down_0|NZ_CP045551.1_5938118_5940101_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|273aa|down_1|NZ_CP045551.1_5940300_5941119_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|103aa|down_2|NZ_CP045551.1_5941159_5941468_-	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|down_3|NZ_CP045551.1_5941585_5942215_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|476aa|down_4|NZ_CP045551.1_5942536_5943964_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|429aa|down_5|NZ_CP045551.1_5944072_5945359_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|497aa|down_6|NZ_CP045551.1_5945516_5947007_-	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|297aa|down_7|NZ_CP045551.1_5947142_5948033_+	cd08481, PBP2_GcdR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators GcdR-like, contains the type 2 periplasmic binding fold	NA|465aa|down_8|NZ_CP045551.1_5948236_5949631_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|309aa|down_9|NZ_CP045551.1_5949683_5950610_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional
