assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	1	454665-454749	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	454691-454723|454691-454723	NZ_CP053640.1_770362-770330|NZ_CP053640.1_1290011-1290043	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP053640.1_445294_445864_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP053640.1_445853_446438_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP053640.1_446438_446792_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP053640.1_446794_447511_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP053640.1_447550_448237_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP053640.1_448328_448790_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|734aa|up_3|NZ_CP053640.1_448794_450996_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP053640.1_451052_452027_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP053640.1_452071_452323_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP053640.1_452668_454492_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP053640.1_455057_456182_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP053640.1_456282_457260_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP053640.1_457291_457918_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP053640.1_457986_459819_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP053640.1_459954_461094_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP053640.1_461097_462036_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP053640.1_462037_462790_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP053640.1_462796_464143_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP053640.1_464435_464612_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP053640.1_464855_465539_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	2	1246783-1246864	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1246807-1246840	NZ_CP053640.1_770363-770330	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|417aa|up_9|NZ_CP053640.1_1237206_1238457_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP053640.1_1238562_1239870_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP053640.1_1239967_1240729_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP053640.1_1241056_1241908_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP053640.1_1242141_1242336_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP053640.1_1242689_1243511_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP053640.1_1243528_1244224_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP053640.1_1244216_1245242_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP053640.1_1245491_1245788_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP053640.1_1245780_1246167_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP053640.1_1246967_1247846_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP053640.1_1248024_1248405_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP053640.1_1248562_1248919_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP053640.1_1249062_1249383_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP053640.1_1249533_1250073_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP053640.1_1250155_1250872_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP053640.1_1251019_1251442_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP053640.1_1251840_1252335_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP053640.1_1252489_1253107_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP053640.1_1253179_1253761_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	3	1295523-1295601	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	1	1295547-1295577	NZ_CP053640.1_420236-420266	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP053640.1_1303079_1303187_-,NA|35aa|down_7|NZ_CP053640.1_1304619_1304724_-	NA|301aa|up_9|NZ_CP053640.1_1284404_1285307_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP053640.1_1285549_1286137_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP053640.1_1286700_1287645_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP053640.1_1287755_1288751_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP053640.1_1288747_1289659_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP053640.1_1290544_1291480_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP053640.1_1291546_1292986_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP053640.1_1292993_1293479_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP053640.1_1293486_1294326_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP053640.1_1294331_1295264_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP053640.1_1295927_1298774_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP053640.1_1298781_1300767_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP053640.1_1301035_1301272_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP053640.1_1301268_1301919_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP053640.1_1302092_1302932_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP053640.1_1303079_1303187_-	NA	NA|370aa|down_6|NZ_CP053640.1_1303340_1304451_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP053640.1_1304619_1304724_-	NA	NA|844aa|down_8|NZ_CP053640.1_1304765_1307297_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP053640.1_1307710_1308283_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	4	1691700-1691802	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP053640.1_1683318_1683855_+,NA|221aa|up_1|NZ_CP053640.1_1689946_1690609_+,NA|33aa|down_0|NZ_CP053640.1_1692477_1692576_-,NA|128aa|down_6|NZ_CP053640.1_1698823_1699207_+,NA|70aa|down_8|NZ_CP053640.1_1700031_1700241_+	NA|91aa|up_9|NZ_CP053640.1_1681551_1681824_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP053640.1_1682222_1682927_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP053640.1_1683318_1683855_+	NA	NA|514aa|up_6|NZ_CP053640.1_1683967_1685509_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP053640.1_1685533_1687000_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP053640.1_1687037_1688306_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP053640.1_1688305_1688884_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP053640.1_1689396_1689804_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP053640.1_1689946_1690609_+	NA	NA|319aa|up_0|NZ_CP053640.1_1690726_1691683_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP053640.1_1692477_1692576_-	NA	NA|463aa|down_1|NZ_CP053640.1_1692660_1694049_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP053640.1_1694128_1694884_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP053640.1_1695375_1695945_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP053640.1_1695960_1697484_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP053640.1_1697927_1698554_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP053640.1_1698823_1699207_+	NA	NA|194aa|down_7|NZ_CP053640.1_1699272_1699854_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP053640.1_1700031_1700241_+	NA	NA|84aa|down_9|NZ_CP053640.1_1700279_1700531_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	5	2330751-2330884	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2330768-2330813|2330831-2330867	NZ_CP053640.1_2327202-2327247|NZ_CP053640.1_2327265-2327301	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|78aa|down_4|NZ_CP053640.1_2338817_2339051_+,NA|103aa|down_5|NZ_CP053640.1_2339158_2339467_-,NA|89aa|down_6|NZ_CP053640.1_2339610_2339877_-	NA|204aa|up_9|NZ_CP053640.1_2313217_2313829_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP053640.1_2314375_2315653_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP053640.1_2316129_2317953_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP053640.1_2318091_2318508_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP053640.1_2318738_2319431_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP053640.1_2319595_2320360_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP053640.1_2320512_2321193_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP053640.1_2321216_2322770_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP053640.1_2322886_2324245_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1011aa|up_0|NZ_CP053640.1_2324713_2327746_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP053640.1_2331492_2332359_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP053640.1_2332569_2333313_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP053640.1_2333636_2333993_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|988aa|down_3|NZ_CP053640.1_2334297_2337261_+	pfam18483, Bact_lectin, Bacterial lectin	NA|78aa|down_4|NZ_CP053640.1_2338817_2339051_+	NA	NA|103aa|down_5|NZ_CP053640.1_2339158_2339467_-	NA	NA|89aa|down_6|NZ_CP053640.1_2339610_2339877_-	NA	NA|603aa|down_7|NZ_CP053640.1_2340160_2341969_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_8|NZ_CP053640.1_2342100_2342493_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_9|NZ_CP053640.1_2342494_2345356_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	6	2405914-2405992	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	2405937-2405969|2405937-2405969|2405937-2405969|2405937-2405969|2405937-2405969	NZ_CP053640.1_1246494-1246526|NZ_CP053640.1_1282712-1282744|NZ_CP053640.1_2796254-2796222|NZ_CP053640.1_1282768-1282800|NZ_CP053640.1_1282824-1282856	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP053640.1_2402838_2403498_-,NA|36aa|up_0|NZ_CP053640.1_2405487_2405595_+,NA	NA|693aa|up_9|NZ_CP053640.1_2395300_2397379_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP053640.1_2397516_2398926_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP053640.1_2399211_2400018_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP053640.1_2400080_2400737_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP053640.1_2400849_2401323_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP053640.1_2401445_2402657_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP053640.1_2402838_2403498_-	NA	NA|381aa|up_2|NZ_CP053640.1_2403557_2404700_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP053640.1_2404967_2405354_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP053640.1_2405487_2405595_+	NA	NA|588aa|down_0|NZ_CP053640.1_2406297_2408061_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP053640.1_2408085_2409819_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP053640.1_2410271_2410958_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP053640.1_2410935_2412294_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP053640.1_2412295_2413303_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP053640.1_2413280_2414396_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP053640.1_2414406_2415099_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP053640.1_2415109_2415577_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP053640.1_2415628_2416606_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP053640.1_2416607_2417555_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	7	2570627-2570707	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	16	2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682|2570652-2570682	NZ_CP053640.1_1282772-1282802|NZ_CP053640.1_1282828-1282858|NZ_CP053640.1_440085-440055|NZ_CP053640.1_770404-770374|NZ_CP053640.1_976505-976475|NZ_CP053640.1_1463484-1463454|NZ_CP053640.1_1730539-1730509|NZ_CP053640.1_79220-79250|NZ_CP053640.1_681825-681855|NZ_CP053640.1_681941-681971|NZ_CP053640.1_1080526-1080556|NZ_CP053640.1_1246442-1246472|NZ_CP053640.1_1246498-1246528|NZ_CP053640.1_1282716-1282746|NZ_CP053640.1_2025372-2025402|NZ_CP053640.1_2581453-2581483	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP053640.1_2570748_2570934_-,NA|84aa|down_5|NZ_CP053640.1_2574073_2574325_-,NA|106aa|down_8|NZ_CP053640.1_2579446_2579764_-,NA|55aa|down_9|NZ_CP053640.1_2580008_2580173_-	NA|202aa|up_9|NZ_CP053640.1_2563519_2564125_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP053640.1_2564294_2565299_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP053640.1_2565329_2565836_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP053640.1_2565837_2566332_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP053640.1_2566394_2567654_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP053640.1_2567650_2568136_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP053640.1_2568149_2568596_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP053640.1_2568601_2568835_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP053640.1_2568841_2569441_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP053640.1_2569460_2570483_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP053640.1_2570748_2570934_-	NA	NA|117aa|down_1|NZ_CP053640.1_2571059_2571410_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP053640.1_2571511_2572723_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP053640.1_2572715_2573156_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP053640.1_2573317_2574082_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP053640.1_2574073_2574325_-	NA	NA|422aa|down_6|NZ_CP053640.1_2574713_2575979_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP053640.1_2576095_2579263_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP053640.1_2579446_2579764_-	NA	NA|55aa|down_9|NZ_CP053640.1_2580008_2580173_-	NA
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	8	2678659-2678744	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP053640.1_2689706_2689865_-,NA|35aa|down_8|NZ_CP053640.1_2690544_2690649_+,NA|364aa|down_9|NZ_CP053640.1_2691081_2692173_-	NA|396aa|up_9|NZ_CP053640.1_2653903_2655091_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP053640.1_2655109_2655793_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP053640.1_2655969_2657313_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP053640.1_2657411_2657885_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP053640.1_2658207_2659650_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP053640.1_2659797_2660862_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP053640.1_2667102_2668011_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP053640.1_2668199_2669009_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP053640.1_2669010_2669943_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP053640.1_2669969_2671325_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP053640.1_2679366_2680473_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP053640.1_2680472_2680907_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP053640.1_2680918_2683051_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP053640.1_2683085_2684624_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP053640.1_2685304_2687110_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP053640.1_2687341_2688124_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP053640.1_2688191_2689049_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP053640.1_2689706_2689865_-	NA	NA|35aa|down_8|NZ_CP053640.1_2690544_2690649_+	NA	NA|364aa|down_9|NZ_CP053640.1_2691081_2692173_-	NA
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	9	2690984-2691065	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP053640.1_2689706_2689865_-,NA|35aa|up_0|NZ_CP053640.1_2690544_2690649_+,NA|364aa|down_0|NZ_CP053640.1_2691081_2692173_-,NA|77aa|down_5|NZ_CP053640.1_2695959_2696190_+	NA|2482aa|up_9|NZ_CP053640.1_2671602_2679048_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP053640.1_2679366_2680473_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP053640.1_2680472_2680907_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP053640.1_2680918_2683051_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP053640.1_2683085_2684624_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP053640.1_2685304_2687110_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP053640.1_2687341_2688124_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP053640.1_2688191_2689049_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP053640.1_2689706_2689865_-	NA	NA|35aa|up_0|NZ_CP053640.1_2690544_2690649_+	NA	NA|364aa|down_0|NZ_CP053640.1_2691081_2692173_-	NA	NA|326aa|down_1|NZ_CP053640.1_2692438_2693416_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP053640.1_2693417_2693738_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP053640.1_2693889_2694555_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP053640.1_2694990_2695929_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP053640.1_2695959_2696190_+	NA	NA|458aa|down_6|NZ_CP053640.1_2696861_2698235_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP053640.1_2698691_2699105_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP053640.1_2699304_2699748_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP053640.1_2699868_2700579_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_013305955.1_ASM1330595v1	NZ_CP053640	Staphylococcus aureus strain 14505 chromosome, complete genome	10	2820240-2820321	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	2820264-2820297|2820264-2820297|2820264-2820297|2820264-2820297|2820264-2820297	NZ_CP053640.1_982109-982076|NZ_CP053640.1_1295569-1295602|NZ_CP053640.1_328039-328006|NZ_CP053640.1_765956-765989|NZ_CP053640.1_2132421-2132454	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|61aa|down_5|NZ_CP053640.1_2827432_2827615_-,NA|49aa|down_7|NZ_CP053640.1_2827867_2828014_-	NA|48aa|up_9|NZ_CP053640.1_2810424_2810568_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP053640.1_2810570_2811134_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP053640.1_2811369_2811504_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP053640.1_2812103_2812889_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP053640.1_2813249_2813876_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP053640.1_2814072_2815332_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP053640.1_2815356_2816100_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP053640.1_2816274_2816559_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP053640.1_2816634_2818251_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP053640.1_2818790_2820098_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP053640.1_2820541_2821765_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP053640.1_2822200_2823256_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP053640.1_2823277_2824294_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP053640.1_2825412_2826450_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|238aa|down_4|NZ_CP053640.1_2826640_2827354_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|61aa|down_5|NZ_CP053640.1_2827432_2827615_-	NA	NA|62aa|down_6|NZ_CP053640.1_2827685_2827871_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|49aa|down_7|NZ_CP053640.1_2827867_2828014_-	NA	NA|285aa|down_8|NZ_CP053640.1_2828087_2828942_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|239aa|down_9|NZ_CP053640.1_2828953_2829670_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
