assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	1	83532-83621	1	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|NZ_CP053353.1_78404_78635_-,NA|364aa|up_0|NZ_CP053353.1_82423_83515_+,NA|35aa|down_0|NZ_CP053353.1_83957_84062_-,NA|31aa|down_2|NZ_CP053353.1_86173_86266_+	NA|237aa|up_9|NZ_CP053353.1_74014_74725_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP053353.1_74845_75289_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP053353.1_75488_75902_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP053353.1_76359_77733_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP053353.1_78404_78635_-	NA	NA|313aa|up_4|NZ_CP053353.1_78665_79604_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP053353.1_80038_80704_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP053353.1_80855_81176_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP053353.1_81177_82158_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP053353.1_82423_83515_+	NA	NA|35aa|down_0|NZ_CP053353.1_83957_84062_-	NA	NA|379aa|down_1|NZ_CP053353.1_84748_85885_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP053353.1_86173_86266_+	NA	NA|286aa|down_3|NZ_CP053353.1_86970_87828_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP053353.1_87895_88678_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP053353.1_88909_90715_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP053353.1_91395_92934_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP053353.1_92968_95101_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP053353.1_95112_95547_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP053353.1_95546_96653_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	2	207652-207845	1	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	17	207675-207707|207675-207707|207675-207707|207675-207707|207675-207707|207675-207707|207731-207766|207731-207766|207731-207766|207731-207766|207790-207822|207790-207822|207790-207822|207790-207822|207790-207822|207790-207822|207790-207822	NZ_CP053353.1_482721-482753|NZ_CP053353.1_1507390-1507422|NZ_CP053353.1_2114960-2114992|NZ_CP053353.1_2674084-2674116|NZ_CP053353.1_1817586-1817554|NZ_CP053353.1_2025718-2025686|NZ_CP053353.1_1817533-1817498|NZ_CP053353.1_2516771-2516736|NZ_CP053353.1_2338184-2338219|NZ_CP053353.1_2684828-2684863|NZ_CP053353.1_482721-482753|NZ_CP053353.1_1507278-1507310|NZ_CP053353.1_1507334-1507366|NZ_CP053353.1_1507390-1507422|NZ_CP053353.1_2674084-2674116|NZ_CP053353.1_1817586-1817554|NZ_CP053353.1_2025718-2025686	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|55aa|up_9|NZ_CP053353.1_198179_198344_+,NA|106aa|up_8|NZ_CP053353.1_198588_198906_+,NA|84aa|up_5|NZ_CP053353.1_204030_204282_+,NA|57aa|up_0|NZ_CP053353.1_207421_207592_+,NA	NA|55aa|up_9|NZ_CP053353.1_198179_198344_+	NA	NA|106aa|up_8|NZ_CP053353.1_198588_198906_+	NA	NA|1056aa|up_7|NZ_CP053353.1_199092_202260_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP053353.1_202376_203642_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP053353.1_204030_204282_+	NA	NA|255aa|up_4|NZ_CP053353.1_204273_205038_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP053353.1_205199_205640_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP053353.1_205632_206844_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP053353.1_206945_207296_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP053353.1_207421_207592_+	NA	NA|341aa|down_0|NZ_CP053353.1_207986_209009_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP053353.1_209028_209628_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP053353.1_209634_209868_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP053353.1_209873_210320_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP053353.1_210333_210819_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP053353.1_210815_212075_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP053353.1_212137_212632_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP053353.1_212633_213140_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP053353.1_213170_214175_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP053353.1_214344_214950_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	3	1102115-1102215	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|70aa|up_8|NZ_CP053353.1_1093687_1093897_-,NA|128aa|up_6|NZ_CP053353.1_1094721_1095105_-,NA|34aa|up_0|NZ_CP053353.1_1101339_1101441_+,NA|221aa|down_1|NZ_CP053353.1_1103305_1103968_-,NA|179aa|down_7|NZ_CP053353.1_1110059_1110596_-	NA|84aa|up_9|NZ_CP053353.1_1093397_1093649_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP053353.1_1093687_1093897_-	NA	NA|194aa|up_7|NZ_CP053353.1_1094074_1094656_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP053353.1_1094721_1095105_-	NA	NA|209aa|up_5|NZ_CP053353.1_1095359_1095986_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP053353.1_1096430_1097954_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP053353.1_1097969_1098539_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP053353.1_1099030_1099786_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP053353.1_1099866_1101255_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP053353.1_1101339_1101441_+	NA	NA|319aa|down_0|NZ_CP053353.1_1102231_1103188_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP053353.1_1103305_1103968_-	NA	NA|136aa|down_2|NZ_CP053353.1_1104110_1104518_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP053353.1_1105030_1105609_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP053353.1_1105608_1106877_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP053353.1_1106914_1108381_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP053353.1_1108405_1109947_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP053353.1_1110059_1110596_-	NA	NA|235aa|down_8|NZ_CP053353.1_1110988_1111693_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP053353.1_1112091_1112364_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	4	1344854-1344946	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|36aa|up_3|NZ_CP053353.1_1341337_1341445_+,NA|169aa|down_4|NZ_CP053353.1_1348693_1349200_+,NA|239aa|down_5|NZ_CP053353.1_1349361_1350078_+	NA|313aa|up_9|NZ_CP053353.1_1335539_1336478_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP053353.1_1336688_1337225_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP053353.1_1337393_1337870_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP053353.1_1337909_1339205_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP053353.1_1339232_1339754_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP053353.1_1340252_1341263_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP053353.1_1341337_1341445_+	NA	NA|139aa|up_2|NZ_CP053353.1_1341537_1341954_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP053353.1_1341950_1343612_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP053353.1_1344000_1344636_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP053353.1_1345014_1345902_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP053353.1_1346049_1347000_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP053353.1_1347054_1347774_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP053353.1_1347757_1348558_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP053353.1_1348693_1349200_+	NA	NA|239aa|down_5|NZ_CP053353.1_1349361_1350078_+	NA	NA|263aa|down_6|NZ_CP053353.1_1350246_1351035_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP053353.1_1351285_1351660_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP053353.1_1352607_1353537_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP053353.1_1353731_1353956_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	5	1460933-1461015	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|69aa|up_9|NZ_CP053353.1_1447533_1447740_+,NA|34aa|down_1|NZ_CP053353.1_1462471_1462573_+,NA|52aa|down_8|NZ_CP053353.1_1470582_1470738_+	NA|69aa|up_9|NZ_CP053353.1_1447533_1447740_+	NA	NA|237aa|up_8|NZ_CP053353.1_1447827_1448538_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP053353.1_1448521_1449526_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP053353.1_1449999_1451940_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP053353.1_1452210_1454094_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP053353.1_1454105_1455887_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP053353.1_1456108_1457086_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP053353.1_1457078_1458593_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP053353.1_1458832_1459891_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP053353.1_1460241_1460784_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP053353.1_1461463_1462381_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP053353.1_1462471_1462573_+	NA	NA|502aa|down_2|NZ_CP053353.1_1462650_1464156_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP053353.1_1464496_1464997_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP053353.1_1465016_1465883_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP053353.1_1466683_1467082_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP053353.1_1467044_1469150_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP053353.1_1469267_1470239_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP053353.1_1470582_1470738_+	NA	NA|324aa|down_9|NZ_CP053353.1_1470776_1471748_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	6	1550655-1550736	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	1550679-1550712|1550679-1550712	NZ_CP053353.1_2025764-2025731|NZ_CP053353.1_2114914-2114947	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|194aa|up_9|NZ_CP053353.1_1543758_1544340_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP053353.1_1544412_1545030_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP053353.1_1545184_1545679_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP053353.1_1546077_1546500_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP053353.1_1546647_1547364_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP053353.1_1547446_1547986_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP053353.1_1548135_1548456_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP053353.1_1548599_1548956_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP053353.1_1549113_1549494_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP053353.1_1549672_1550551_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP053353.1_1551292_1551679_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP053353.1_1551671_1551968_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP053353.1_1552217_1553243_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP053353.1_1553235_1553931_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP053353.1_1553948_1554770_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP053353.1_1555123_1555318_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP053353.1_1555550_1556402_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP053353.1_1556729_1557491_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP053353.1_1557588_1558896_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP053353.1_1559001_1560252_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	7	1733054-1733141	6	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|45aa|down_0|NZ_CP053353.1_1733150_1733285_-,NA|432aa|down_1|NZ_CP053353.1_1733436_1734732_+	NA|224aa|up_9|NZ_CP053353.1_1720844_1721516_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP053353.1_1721508_1723698_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP053353.1_1723676_1725161_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP053353.1_1725153_1726182_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP053353.1_1726184_1726751_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP053353.1_1726765_1728244_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP053353.1_1728265_1729513_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP053353.1_1729777_1730584_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP053353.1_1730576_1731977_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP053353.1_1731991_1732567_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP053353.1_1733150_1733285_-	NA	NA|432aa|down_1|NZ_CP053353.1_1733436_1734732_+	NA	NA|391aa|down_2|NZ_CP053353.1_1735156_1736329_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP053353.1_1736382_1736925_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP053353.1_1737078_1737345_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP053353.1_1737347_1739066_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP053353.1_1739302_1739536_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP053353.1_1739733_1741095_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP053353.1_1741091_1742111_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP053353.1_1742243_1742906_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	8	1817567-1817652	7	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1817597-1817622|1817597-1817622|1817597-1817622|1817597-1817622|1817597-1817622	NZ_CP053353.1_645827-645802|NZ_CP053353.1_645883-645858|NZ_CP053353.1_645939-645914|NZ_CP053353.1_1507323-1507298|NZ_CP053353.1_1507379-1507354	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|31aa|up_9|NZ_CP053353.1_1810137_1810230_-,NA|169aa|up_7|NZ_CP053353.1_1811262_1811769_+,NA|62aa|up_4|NZ_CP053353.1_1813850_1814036_-,NA|78aa|up_3|NZ_CP053353.1_1814657_1814891_-,NA|49aa|up_1|NZ_CP053353.1_1816999_1817146_+,NA|75aa|up_0|NZ_CP053353.1_1817102_1817327_+,NA|76aa|down_6|NZ_CP053353.1_1824626_1824854_+	NA|31aa|up_9|NZ_CP053353.1_1810137_1810230_-	NA	NA|134aa|up_8|NZ_CP053353.1_1810189_1810591_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP053353.1_1811262_1811769_+	NA	NA|166aa|up_6|NZ_CP053353.1_1812027_1812525_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP053353.1_1812678_1813029_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP053353.1_1813850_1814036_-	NA	NA|78aa|up_3|NZ_CP053353.1_1814657_1814891_-	NA	NA|320aa|up_2|NZ_CP053353.1_1815367_1816327_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP053353.1_1816999_1817146_+	NA	NA|75aa|up_0|NZ_CP053353.1_1817102_1817327_+	NA	NA|239aa|down_0|NZ_CP053353.1_1817827_1818544_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP053353.1_1818651_1819377_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP053353.1_1819471_1820197_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP053353.1_1820634_1821636_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP053353.1_1821658_1822591_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP053353.1_1822762_1824319_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP053353.1_1824626_1824854_+	NA	NA|316aa|down_7|NZ_CP053353.1_1825158_1826106_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP053353.1_1826354_1826543_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP053353.1_1827454_1827589_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	9	2516817-2517026	2	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	NNNAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA	40	3	29	2516854-2516875|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516913-2516930|2516968-2516989	NZ_CP053353.1_2516795-2516816|NZ_CP053353.1_645977-645960|NZ_CP053353.1_1501872-1501855|NZ_CP053353.1_1501927-1501910|NZ_CP053353.1_1507532-1507515|NZ_CP053353.1_1550752-1550735|NZ_CP053353.1_1619143-1619126|NZ_CP053353.1_1743056-1743039|NZ_CP053353.1_2115046-2115029|NZ_CP053353.1_2338215-2338198|NZ_CP053353.1_2675510-2675493|NZ_CP053353.1_836756-836773|NZ_CP053353.1_983233-983250|NZ_CP053353.1_1063579-1063596|NZ_CP053353.1_1063634-1063651|NZ_CP053353.1_2025632-2025649|NZ_CP053353.1_2516740-2516757|NZ_CP053353.1_1514800-1514783|NZ_CP053353.1_2030071-2030054|NZ_CP053353.1_2074973-2074956|NZ_CP053353.1_2372181-2372164|NZ_CP053353.1_2684859-2684842|NZ_CP053353.1_399194-399211|NZ_CP053353.1_983288-983305|NZ_CP053353.1_1817502-1817519|NZ_CP053353.1_2447112-2447095|NZ_CP053353.1_1474835-1474852|NZ_CP053353.1_2554814-2554831|NZ_CP053353.1_2516795-2516816	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|199aa|up_9|NZ_CP053353.1_2507335_2507932_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP053353.1_2507960_2508818_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP053353.1_2508917_2509229_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP053353.1_2509293_2510370_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP053353.1_2510456_2510768_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP053353.1_2510892_2511735_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP053353.1_2512204_2512849_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP053353.1_2512863_2513655_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP053353.1_2514204_2515053_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP053353.1_2515056_2516466_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP053353.1_2517329_2517752_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP053353.1_2517768_2518464_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP053353.1_2518460_2520122_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP053353.1_2520528_2521797_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP053353.1_2521913_2528474_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP053353.1_2528799_2529111_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP053353.1_2529132_2531550_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP053353.1_2531837_2533019_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP053353.1_2533128_2534082_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP053353.1_2534078_2534642_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_013307005.1_ASM1330700v1	NZ_CP053353	Staphylococcus aureus strain 16405 plasmid unnamed, complete sequence	10	2639840-2639967	8	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|132aa|up_9|NZ_CP053353.1_2630540_2630936_-,NA|51aa|up_8|NZ_CP053353.1_2631595_2631748_-,NA|38aa|up_0|NZ_CP053353.1_2639605_2639719_+,NA|31aa|down_5|NZ_CP053353.1_2652760_2652853_-	NA|132aa|up_9|NZ_CP053353.1_2630540_2630936_-	NA	NA|51aa|up_8|NZ_CP053353.1_2631595_2631748_-	NA	NA|200aa|up_7|NZ_CP053353.1_2631772_2632372_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_6|NZ_CP053353.1_2632530_2633001_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_5|NZ_CP053353.1_2633005_2634133_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_4|NZ_CP053353.1_2634283_2635006_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_3|NZ_CP053353.1_2634998_2636456_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_2|NZ_CP053353.1_2636713_2637775_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|401aa|up_1|NZ_CP053353.1_2638267_2639470_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|38aa|up_0|NZ_CP053353.1_2639605_2639719_+	NA	NA|149aa|down_0|NZ_CP053353.1_2647959_2648406_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP053353.1_2648502_2649453_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP053353.1_2649458_2649914_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP053353.1_2649994_2651284_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP053353.1_2651576_2652671_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NZ_CP053353.1_2652760_2652853_-	NA	NA|579aa|down_6|NZ_CP053353.1_2652861_2654598_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NZ_CP053353.1_2654888_2655431_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NZ_CP053353.1_2655732_2656770_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP053353.1_2656921_2657899_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
