The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	602524	615573	1857164		Streptococcus_phage(77.78%)	12	NA	NA
WP_004197422.1|602524_603526_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
WP_014608125.1|603584_603782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680937.1|604664_605780_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.6	5.2e-157
WP_011680938.1|605826_606282_-	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.0	2.2e-77
WP_011680939.1|606490_607795_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	1.4e-246
WP_011680940.1|607946_608132_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	96.7	3.0e-25
WP_002947233.1|608293_610480_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_024009810.1|610641_611805_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.2	1.7e-219
WP_002947238.1|611801_612479_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
WP_011680943.1|612468_613326_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_011680944.1|613338_614406_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_011225712.1|614406_615573_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.6e-39
>prophage 2
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	727657	736582	1857164		Bacillus_phage(50.0%)	8	NA	NA
WP_002948474.1|727657_728263_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
WP_011227085.1|728357_729608_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_014608183.1|729614_730592_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_014621429.1|730593_731205_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.0	4.6e-22
WP_011681019.1|731237_732977_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_011681020.1|732966_734715_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	7.1e-52
WP_002885174.1|734891_735023_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_011681022.1|735031_736582_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
>prophage 3
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	740944	809203	1857164	transposase,tRNA,integrase	Streptococcus_phage(44.12%)	59	745607:745624	753402:753419
WP_014621434.1|740944_743581_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.2	2.8e-84
WP_014608193.1|743757_745476_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.1e-27
745607:745624	attL	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_014727422.1|745895_746057_-	hypothetical protein	NA	A3F673	Streptococcus_phage	45.0	2.0e-06
WP_014727423.1|746540_746816_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	45.2	7.8e-14
WP_024704073.1|746832_747018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024704074.1|747315_748821_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	35.7	2.2e-62
WP_024704075.1|748810_749671_-	primase C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	62.5	3.1e-101
WP_011227098.1|749685_749958_-	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.4e-18
WP_024704076.1|750200_750437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024704077.1|750450_750645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024704078.1|750648_750942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608200.1|751180_751378_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	67.7	1.9e-17
WP_014608201.1|751540_752053_+	helix-turn-helix transcriptional regulator	NA	A0A286QPK5	Streptococcus_phage	52.8	4.0e-19
WP_011227104.1|752135_753302_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.3	1.9e-154
WP_002948199.1|753417_753753_+	hypothetical protein	NA	NA	NA	NA	NA
753402:753419	attR	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_002950451.1|754081_756331_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_014621437.1|756519_757395_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_024704080.1|757534_759253_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.0	2.9e-271
WP_011681047.1|759335_759908_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_014608202.1|759935_760481_-	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
WP_002948206.1|760473_761157_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_024704082.1|761350_763021_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_014621440.1|763870_764170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621441.1|764247_764571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621442.1|764593_764755_+	histidine kinase	NA	NA	NA	NA	NA
WP_014621443.1|764774_765290_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	29.8	1.1e-05
WP_087009847.1|765390_766960_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_014621445.1|767151_768363_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.4	1.0e-166
WP_011681050.1|768721_769792_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011681051.1|769909_771448_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_024704321.1|772272_777129_+	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	27.7	4.3e-06
WP_011681055.1|778998_780255_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	9.0e-166
WP_002947597.1|780354_780591_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_002950487.1|780659_781580_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
WP_002950490.1|781902_782493_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002950496.1|784444_784843_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_024704314.1|784911_785976_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.1	2.3e-53
WP_024704315.1|786089_787628_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
WP_002950506.1|787620_788688_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681056.1|788689_789646_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681057.1|789749_790385_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.5	4.5e-73
WP_014608206.1|790479_792966_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.6	1.5e-212
WP_011681058.1|793110_793593_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_004197254.1|793597_794779_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011681059.1|794815_796162_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.8	1.9e-57
WP_014608211.1|797129_797336_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.9	2.9e-13
WP_002950526.1|797677_798058_+	RidA family protein	NA	NA	NA	NA	NA
WP_024704316.1|798232_798886_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.9	9.7e-63
WP_014608213.1|798885_799329_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	56.3	3.5e-40
WP_014608214.1|799321_800038_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	46.9	3.4e-61
WP_014608215.1|800157_800649_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.8e-45
WP_014608216.1|801469_801658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621466.1|801862_802633_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225838.1|802613_803504_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_014621467.1|803500_804475_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.8	4.0e-137
WP_002945081.1|804471_805383_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_002944716.1|806693_806894_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_014621469.1|807173_807374_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	90.9	3.4e-27
WP_106693466.1|807632_809203_-|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
>prophage 4
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	1486280	1538804	1857164	bacteriocin,transposase,tRNA,protease	Bacillus_virus(23.08%)	56	NA	NA
WP_014608641.1|1486280_1487723_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_014608642.1|1487722_1489189_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002884769.1|1489188_1489491_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_024010053.1|1489630_1489885_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_080998437.1|1489897_1490107_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_165813972.1|1490422_1491835_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_024703984.1|1492016_1492526_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_024703985.1|1492537_1493386_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002946999.1|1493509_1494061_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_002951720.1|1494123_1494909_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002951721.1|1495168_1496383_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002946987.1|1496737_1497190_+	universal stress protein	NA	NA	NA	NA	NA
WP_011681546.1|1498012_1498186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681547.1|1498246_1498621_-	membrane protein	NA	NA	NA	NA	NA
WP_002946980.1|1498832_1499633_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_157821721.1|1499820_1499949_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_024703987.1|1500628_1501960_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_024703988.1|1502073_1502856_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.0	7.7e-14
WP_011681548.1|1503477_1505544_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011226461.1|1505552_1505795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226462.1|1505791_1506340_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	44.1	3.5e-37
WP_011226463.1|1506336_1507281_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_011681549.1|1507365_1508442_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011681550.1|1508419_1508917_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	1.1e-13
WP_081005005.1|1508950_1509499_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226467.1|1509640_1510561_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_014621911.1|1510626_1510851_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_014608652.1|1511065_1511809_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	1.2e-29
WP_100284797.1|1511808_1512555_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014608653.1|1512942_1513773_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002947030.1|1514232_1514466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608654.1|1514763_1515867_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011226473.1|1516145_1518455_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_011681555.1|1518721_1519504_+	carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_014608655.1|1519554_1520007_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014621914.1|1520357_1520663_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011681558.1|1521640_1522396_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_024703990.1|1522392_1523043_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.0	3.7e-22
WP_024703991.1|1523245_1524202_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011681560.1|1524201_1524957_-	peptidase	NA	NA	NA	NA	NA
WP_014608659.1|1525238_1525601_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002951781.1|1525687_1526551_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
WP_011681561.1|1526671_1528939_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_002951783.1|1529018_1529399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002945924.1|1529523_1529787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197070.1|1530108_1530405_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011681562.1|1530569_1530776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681563.1|1530806_1531496_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_106693466.1|1531689_1533259_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_014608660.1|1533405_1533660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608662.1|1535316_1535547_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681569.1|1535902_1536103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681570.1|1536121_1536298_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002948869.1|1536553_1537285_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	20.9	5.9e-08
WP_024703993.1|1537284_1538625_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011681573.1|1538642_1538804_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	1737668	1745691	1857164	transposase,integrase	Staphylococcus_phage(50.0%)	7	1735026:1735040	1740323:1740337
1735026:1735040	attL	TTTAATAAAATAGTA	NA	NA	NA	NA
WP_024704243.1|1737668_1738124_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.8	3.9e-10
WP_024704245.1|1738487_1739009_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.7	3.4e-18
WP_003331352.1|1739037_1739334_-	DUF4298 domain-containing protein	NA	NA	NA	NA	NA
WP_003726380.1|1740040_1740400_+	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	48.2	5.4e-23
1740323:1740337	attR	TACTATTTTATTAAA	NA	NA	NA	NA
WP_001291323.1|1740396_1742514_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	62.7	3.1e-235
WP_024704246.1|1742879_1744106_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	27.3	5.2e-33
WP_024704247.1|1744095_1745691_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	49.6	2.4e-123
>prophage 6
NZ_CP028896	Streptococcus thermophilus strain CS5 chromosome, complete genome	1857164	1834783	1850355	1857164	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_011681757.1|1834783_1835413_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	45.2	3.6e-22
WP_011226701.1|1835652_1836207_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_002952279.1|1836510_1837305_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|1837297_1838140_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_002947776.1|1838115_1838946_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
WP_024704275.1|1838958_1839501_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011681760.1|1839513_1840371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_024704276.1|1840429_1841707_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.1	1.3e-21
WP_024704277.1|1841708_1842959_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	5.0e-92
WP_106693492.1|1843037_1843427_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	2.9e-22
WP_024704278.1|1843416_1844517_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_011227627.1|1844685_1846167_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
WP_011681763.1|1846343_1847366_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011681764.1|1847793_1848666_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.6	4.8e-33
WP_011226709.1|1848732_1850355_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
