The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP030927	Streptococcus thermophilus strain CS9 chromosome, complete genome	1860988	140194	155271	1860988	transposase	Streptococcus_phage(25.0%)	16	NA	NA
WP_173940696.1|140194_140743_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	40.4	3.8e-20
WP_002950526.1|141774_142155_+	RidA family protein	NA	NA	NA	NA	NA
WP_173940314.1|142328_142982_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.4	1.8e-61
WP_002950528.1|142981_143425_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_011225834.1|143417_144134_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002946191.1|144253_144745_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_173940315.1|145962_146733_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225838.1|146713_147604_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_014621467.1|147600_148575_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.8	4.0e-137
WP_002945081.1|148571_149483_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_173940316.1|149500_150250_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_096811390.1|150256_150493_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_002944716.1|150792_150993_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_011681063.1|151272_151473_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_173940317.1|151803_152979_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	28.3	1.7e-36
WP_173940318.1|153099_155271_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.4e-65
>prophage 2
NZ_CP030927	Streptococcus thermophilus strain CS9 chromosome, complete genome	1860988	689731	698654	1860988		Bacillus_phage(50.0%)	8	NA	NA
WP_173940438.1|689731_691282_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
WP_002885174.1|691290_691422_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_173940439.1|691596_693345_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	9.3e-52
WP_173940440.1|693334_695074_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	4.9e-45
WP_002948477.1|695106_695718_-	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.0	6.0e-22
WP_014608183.1|695719_696697_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_173940441.1|696703_697954_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	1.5e-96
WP_002948474.1|698048_698654_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
>prophage 3
NZ_CP030927	Streptococcus thermophilus strain CS9 chromosome, complete genome	1860988	733943	800631	1860988	transposase,bacteriocin,protease,tRNA	Bacillus_phage(28.57%)	60	NA	NA
WP_173940448.1|733943_734843_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_087009820.1|734844_735405_-	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	30.8	1.7e-10
WP_173940449.1|735554_736556_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_173940450.1|737150_738755_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	47.3	8.4e-116
WP_011225758.1|738797_739550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173940451.1|739577_740165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173940452.1|740176_741475_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.9	4.0e-15
WP_173940453.1|741434_743624_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_173940454.1|743682_746673_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.9	9.1e-23
WP_173940455.1|747590_747776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727399.1|747860_748064_-	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_142386343.1|748190_748343_-	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_173940456.1|748873_749500_+	Pr6Pr family membrane protein	NA	NA	NA	NA	NA
WP_002948103.1|749755_750145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014608156.1|750336_751284_+	N-acetylmuramoyl-L-alanine amidase	NA	A9QTG1	Bacillus_phage	36.6	8.4e-23
WP_002950328.1|751398_751872_+|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
WP_173940457.1|751874_752513_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_011225749.1|752937_753840_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_002952755.1|754164_754644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173940458.1|756064_757555_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	39.1	5.1e-91
WP_173940459.1|758965_760600_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_173940460.1|760586_761951_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_173940710.1|761987_763478_-	DNA mismatch repair protein MutH	NA	NA	NA	NA	NA
WP_173940461.1|763595_764870_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SFL7	Streptococcus_phage	40.0	1.2e-24
WP_173940462.1|764908_765217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022096788.1|765412_766750_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_002886106.1|766784_766997_-	hypothetical protein	NA	A0A223LEC3	Bacillus_phage	48.5	1.3e-11
WP_173940463.1|767122_767407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173940464.1|767501_768041_+	biotin transporter BioY	NA	NA	NA	NA	NA
WP_002945995.1|768410_769697_-	U32 family peptidase	NA	Q6DW11	Phage_TP	32.2	7.9e-40
WP_002952720.1|769793_770723_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_002945999.1|770955_771252_+	DUF3270 domain-containing protein	NA	NA	NA	NA	NA
WP_173940465.1|771272_771713_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_022096784.1|771725_772124_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_011225734.1|772246_773038_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_173940466.1|773037_773967_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_011225732.1|774095_774359_-	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_002946099.1|774424_774865_-	SprT family protein	NA	NA	NA	NA	NA
WP_173940467.1|774851_776984_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_173940468.1|777347_778250_+	permease	NA	NA	NA	NA	NA
WP_173940469.1|778249_779065_+	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_173940470.1|779996_781049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946754.1|781045_781369_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_011227029.1|781370_782282_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_173940471.1|782458_785827_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
WP_173940472.1|786083_786695_-	DUF2140 domain-containing protein	NA	NA	NA	NA	NA
WP_002950317.1|786864_787122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173940711.1|787288_787747_-	DNA adenine methylase	NA	A0A1P8BMM5	Lactococcus_phage	72.4	1.5e-57
WP_011680955.1|787746_787968_-	helix-turn-helix domain-containing protein	NA	A0A1P8BML9	Lactococcus_phage	82.1	4.3e-23
WP_173940473.1|788135_788966_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_173940474.1|789167_790964_-	recombinase family protein	NA	A0A2I4R675	Erysipelothrix_phage	52.5	1.3e-152
WP_065973048.1|791470_791866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155758745.1|792051_792204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065973047.1|792233_792929_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_065973046.1|792932_793964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811962.1|794384_795736_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.2	2.2e-64
WP_039671026.1|796338_796533_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_039671027.1|796549_796807_-|bacteriocin	ThmA bacteriocin	bacteriocin	NA	NA	NA	NA
WP_024404830.1|797104_799258_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.2	2.8e-42
WP_173940475.1|799269_800631_+|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP030927	Streptococcus thermophilus strain CS9 chromosome, complete genome	1860988	862203	872154	1860988		Streptococcus_phage(85.71%)	8	NA	NA
WP_002947238.1|862203_862881_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
WP_173940502.1|862877_864041_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.2	1.7e-219
WP_002947233.1|864202_866389_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_011225708.1|866888_868193_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	3.2e-246
WP_002950250.1|868401_868857_+	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.7	1.3e-77
WP_173940503.1|868895_870011_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	98.9	1.3e-155
WP_014608125.1|870896_871094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173940504.1|871152_872154_-	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	8.3e-21
>prophage 5
NZ_CP030927	Streptococcus thermophilus strain CS9 chromosome, complete genome	1860988	1838526	1854098	1860988	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_002947767.1|1838526_1839210_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	69.3	2.2e-25
WP_011226701.1|1839394_1839949_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_002952279.1|1840252_1841047_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|1841039_1841882_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_002947776.1|1841857_1842688_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
WP_024704275.1|1842700_1843243_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011681760.1|1843255_1844113_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_024704276.1|1844171_1845449_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.1	1.3e-21
WP_024704277.1|1845450_1846701_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	5.0e-92
WP_002947785.1|1846779_1847157_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_096811730.1|1847159_1848260_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_173940694.1|1848428_1849910_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	2.0e-95
WP_002952292.1|1850086_1851109_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_096811733.1|1851536_1852409_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.6	1.1e-32
WP_011226709.1|1852475_1854098_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
