assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013315695.1_ASM1331569v1	NZ_CP054353	Escherichia coli strain SCU-172 chromosome, complete genome	1	616118-616267	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|603aa|up_6|NZ_CP054353.1_607211_609020_+,NA|65aa|down_8|NZ_CP054353.1_627225_627420_+	NA|238aa|up_9|NZ_CP054353.1_605114_605828_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP054353.1_605898_606492_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP054353.1_606636_607089_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|603aa|up_6|NZ_CP054353.1_607211_609020_+	NA	NA|335aa|up_5|NZ_CP054353.1_609075_610080_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP054353.1_610241_610658_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP054353.1_610703_611207_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP054353.1_611399_612596_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP054353.1_612651_615507_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP054353.1_615506_615950_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP054353.1_616303_617815_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP054353.1_618081_619182_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP054353.1_619181_620264_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|510aa|down_3|NZ_CP054353.1_620398_621928_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP054353.1_622055_623075_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|403aa|down_5|NZ_CP054353.1_623889_625098_+	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	NA|217aa|down_6|NZ_CP054353.1_625094_625745_+	cd10453, GIY-YIG_RE_Cfr42I, Catalytic GIY-YIG domain of type II restriction enzyme R	NA|192aa|down_7|NZ_CP054353.1_625866_626442_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|65aa|down_8|NZ_CP054353.1_627225_627420_+	NA	NA|307aa|down_9|NZ_CP054353.1_628790_629711_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_013315695.1_ASM1331569v1	NZ_CP054353	Escherichia coli strain SCU-172 chromosome, complete genome	2	2392568-2392691	2	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|30aa|down_7|NZ_CP054353.1_2401587_2401677_+	NA|471aa|up_9|NZ_CP054353.1_2382020_2383433_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP054353.1_2383989_2384199_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP054353.1_2384654_2385281_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP054353.1_2385301_2387404_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP054353.1_2387416_2388055_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP054353.1_2388118_2388787_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP054353.1_2388783_2389569_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP054353.1_2389572_2390385_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP054353.1_2390390_2392001_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP054353.1_2392126_2392432_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP054353.1_2393005_2394262_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP054353.1_2394302_2395676_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP054353.1_2395890_2396532_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP054353.1_2396571_2397720_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP054353.1_2398010_2399222_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP054353.1_2399334_2400267_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP054353.1_2400263_2401289_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP054353.1_2401587_2401677_+	NA	NA|390aa|down_8|NZ_CP054353.1_2401842_2403012_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP054353.1_2403157_2403739_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013315695.1_ASM1331569v1	NZ_CP054353	Escherichia coli strain SCU-172 chromosome, complete genome	3	3073224-3073315	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|70aa|up_9|NZ_CP054353.1_3062474_3062684_-,NA	NA|70aa|up_9|NZ_CP054353.1_3062474_3062684_-	NA	NA|1321aa|up_8|NZ_CP054353.1_3062738_3066701_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP054353.1_3066740_3067379_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP054353.1_3067666_3068758_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP054353.1_3068757_3069450_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP054353.1_3069461_3069848_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP054353.1_3069855_3070656_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP054353.1_3070665_3071256_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP054353.1_3071266_3071761_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP054353.1_3071781_3073110_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP054353.1_3073738_3074335_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP054353.1_3074355_3074583_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP054353.1_3074620_3075862_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP054353.1_3076154_3077411_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP054353.1_3077670_3078591_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP054353.1_3078590_3078896_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP054353.1_3079047_3079647_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP054353.1_3079643_3082190_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP054353.1_3082189_3083362_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP054353.1_3083491_3084184_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013315695.1_ASM1331569v1	NZ_CP054353	Escherichia coli strain SCU-172 chromosome, complete genome	4	3806486-3807307	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	3807246-3807278|3807247-3807278	NZ_CP054353.1_1556676-1556708|NZ_CP054353.1_1556677-1556708	I-E:I-E:I-E	13,13,13	13	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|452aa|up_9|NZ_CP054353.1_3788728_3790084_+	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|108aa|up_8|NZ_CP054353.1_3790129_3790453_+	PRK10759, PRK10759, YfiM family lipoprotein	NA|433aa|up_7|NZ_CP054353.1_3790449_3791748_-	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional	NA|858aa|up_6|NZ_CP054353.1_3797529_3800103_-	PRK10865, PRK10865, ATP-dependent chaperone ClpB	NA|244aa|up_5|NZ_CP054353.1_3800232_3800964_-	PRK10723, PRK10723, polyphenol oxidase	NA|327aa|up_4|NZ_CP054353.1_3800960_3801941_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|246aa|up_3|NZ_CP054353.1_3802075_3802813_+	PRK10866, PRK10866, outer membrane protein assembly factor BamD	NA|449aa|up_2|NZ_CP054353.1_3802916_3804263_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|291aa|up_1|NZ_CP054353.1_3804308_3805181_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP054353.1_3805474_3806146_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP054353.1_3807944_3809423_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP054353.1_3809449_3810727_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP054353.1_3811046_3811832_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP054353.1_3811901_3813356_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP054353.1_3813377_3814787_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP054353.1_3814764_3815544_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP054353.1_3815540_3816401_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP054353.1_3816547_3817123_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP054353.1_3817139_3817400_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP054353.1_3817390_3818662_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013315695.1_ASM1331569v1	NZ_CP054353	Escherichia coli strain SCU-172 chromosome, complete genome	5	3833002-3833152	5	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	2	2	TypeI-E	DEDDh,c2c9_V-U4,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|245aa|up_9|NZ_CP054353.1_3823005_3823740_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP054353.1_3824004_3824157_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP054353.1_3824351_3827051_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP054353.1_3827140_3828703_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP054353.1_3828699_3829236_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP054353.1_3829250_3830306_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP054353.1_3830316_3831063_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP054353.1_3831044_3831695_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP054353.1_3831691_3832615_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP054353.1_3832611_3832905_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP054353.1_3833233_3834271_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP054353.1_3834522_3835431_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP054353.1_3835432_3836860_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP054353.1_3836859_3837465_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP054353.1_3837514_3837838_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP054353.1_3838031_3838343_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP054353.1_3838361_3839072_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP054353.1_3839071_3839551_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP054353.1_3839547_3840597_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP054353.1_3840577_3841339_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
