assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	1	1028986-1029318	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA|47aa|up_1|NZ_CP053284.1_1027695_1027836_-,NA	NA|434aa|up_9|NZ_CP053284.1_1018392_1019694_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053284.1_1019741_1021976_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053284.1_1022053_1022302_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053284.1_1022301_1022637_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053284.1_1022707_1023499_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053284.1_1023726_1025364_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053284.1_1025451_1026750_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053284.1_1026809_1027682_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053284.1_1027695_1027836_-	NA	NA|224aa|up_0|NZ_CP053284.1_1027974_1028646_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053284.1_1029957_1031436_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053284.1_1031462_1032740_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053284.1_1033058_1033844_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053284.1_1033913_1035368_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053284.1_1035389_1036799_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053284.1_1036776_1037556_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053284.1_1037552_1038413_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053284.1_1038560_1039136_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053284.1_1039152_1039413_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053284.1_1039403_1040675_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	2	1097953-1098097	2	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA|28aa|up_2|NZ_CP053284.1_1095823_1095907_+,NA	NA|372aa|up_9|NZ_CP053284.1_1090579_1091695_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP053284.1_1091711_1092521_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP053284.1_1092640_1093099_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP053284.1_1093281_1093806_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP053284.1_1093855_1094047_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP053284.1_1094304_1094982_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP053284.1_1095053_1095338_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP053284.1_1095823_1095907_+	NA	NA|304aa|up_1|NZ_CP053284.1_1095984_1096896_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP053284.1_1097020_1097929_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP053284.1_1098173_1099358_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP053284.1_1099483_1102630_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP053284.1_1102626_1103829_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP053284.1_1104018_1104708_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP053284.1_1104765_1106061_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP053284.1_1106467_1107787_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP053284.1_1107862_1109236_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP053284.1_1109391_1111209_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP053284.1_1111213_1111795_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP053284.1_1111887_1112958_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	3	1238242-1238338	3	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA	NA|454aa|up_9|NZ_CP053284.1_1226022_1227384_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP053284.1_1227440_1228742_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP053284.1_1228763_1229909_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP053284.1_1230136_1230922_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP053284.1_1230932_1232168_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP053284.1_1232189_1233239_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP053284.1_1233555_1235223_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP053284.1_1235232_1236492_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP053284.1_1236502_1237318_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP053284.1_1237314_1238208_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP053284.1_1238402_1239470_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP053284.1_1239466_1239976_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP053284.1_1240093_1240816_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP053284.1_1240818_1241313_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP053284.1_1241486_1242872_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP053284.1_1242907_1243429_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP053284.1_1243536_1243749_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP053284.1_1243750_1244617_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP053284.1_1245096_1245639_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP053284.1_1245858_1246551_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	4	2646345-2646475	4	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA|82aa|up_4|NZ_CP053284.1_2642261_2642507_-,NA|363aa|up_0|NZ_CP053284.1_2645203_2646292_-,NA|74aa|down_3|NZ_CP053284.1_2648153_2648375_-,NA|102aa|down_4|NZ_CP053284.1_2648708_2649014_+,NA|62aa|down_5|NZ_CP053284.1_2649224_2649410_+,NA|120aa|down_6|NZ_CP053284.1_2649441_2649801_+,NA|70aa|down_7|NZ_CP053284.1_2649769_2649979_-,NA|129aa|down_9|NZ_CP053284.1_2650740_2651127_+	NA|64aa|up_9|NZ_CP053284.1_2639934_2640126_-	pfam05322, NinE, NINE Protein	NA|137aa|up_8|NZ_CP053284.1_2640122_2640533_-	pfam05772, NinB, NinB protein	NA|225aa|up_7|NZ_CP053284.1_2640587_2641262_-	pfam10543, ORF6N, ORF6N domain	NA|110aa|up_6|NZ_CP053284.1_2641579_2641909_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|103aa|up_5|NZ_CP053284.1_2641898_2642207_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|82aa|up_4|NZ_CP053284.1_2642261_2642507_-	NA	NA|225aa|up_3|NZ_CP053284.1_2642505_2643180_+	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|144aa|up_2|NZ_CP053284.1_2643212_2643644_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|247aa|up_1|NZ_CP053284.1_2644456_2645197_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|363aa|up_0|NZ_CP053284.1_2645203_2646292_-	NA	NA|99aa|down_0|NZ_CP053284.1_2646545_2646842_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|75aa|down_1|NZ_CP053284.1_2646958_2647183_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|236aa|down_2|NZ_CP053284.1_2647293_2648001_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|74aa|down_3|NZ_CP053284.1_2648153_2648375_-	NA	NA|102aa|down_4|NZ_CP053284.1_2648708_2649014_+	NA	NA|62aa|down_5|NZ_CP053284.1_2649224_2649410_+	NA	NA|120aa|down_6|NZ_CP053284.1_2649441_2649801_+	NA	NA|70aa|down_7|NZ_CP053284.1_2649769_2649979_-	NA	NA|74aa|down_8|NZ_CP053284.1_2650435_2650657_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|129aa|down_9|NZ_CP053284.1_2650740_2651127_+	NA
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	5	3467120-3467246	5	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA	NA|395aa|up_9|NZ_CP053284.1_3446027_3447212_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP053284.1_3447285_3448062_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP053284.1_3448066_3449716_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP053284.1_3449716_3454111_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP053284.1_3454254_3454878_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP053284.1_3454874_3456563_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP053284.1_3456711_3459339_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP053284.1_3459485_3460208_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP053284.1_3460335_3464088_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP053284.1_3464783_3467069_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP053284.1_3467302_3468433_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP053284.1_3468432_3468687_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP053284.1_3468740_3469391_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP053284.1_3469853_3470930_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP053284.1_3470934_3472293_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP053284.1_3472565_3474194_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP053284.1_3474183_3475443_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP053284.1_3475439_3476630_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP053284.1_3476822_3477722_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP053284.1_3477734_3477920_+	PRK09956, PRK09956, ISNCY family transposase
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	6	4022838-4022991	2,6	PILER-CR,CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	TGTGTTCCCCGCGCCAGCGGGGATAAACCGGGT,CGGTTTATCCCCGCTGGCGCGGGGAACAC	33,29	0	0	NA	NA	I-E:I-E	2,2	2	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA	NA|254aa|up_9|NZ_CP053284.1_4014651_4015413_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP053284.1_4015393_4016443_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP053284.1_4016439_4016919_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP053284.1_4016918_4017629_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP053284.1_4017647_4017959_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP053284.1_4018152_4018476_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP053284.1_4018525_4019131_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP053284.1_4019130_4020558_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP053284.1_4020559_4021468_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP053284.1_4021719_4022757_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|371aa|down_0|NZ_CP053284.1_4023048_4024161_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|300aa|down_1|NZ_CP053284.1_4024968_4025868_+	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|428aa|down_2|NZ_CP053284.1_4026204_4027488_-	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|420aa|down_3|NZ_CP053284.1_4027477_4028737_-	PRK11017, codB, cytosine permease; Provisional	NA|629aa|down_4|NZ_CP053284.1_4029066_4030953_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|down_5|NZ_CP053284.1_4030992_4032444_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|297aa|down_6|NZ_CP053284.1_4034086_4034977_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|down_7|NZ_CP053284.1_4035215_4036802_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|down_8|NZ_CP053284.1_4036899_4037175_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|224aa|down_9|NZ_CP053284.1_4037321_4037993_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	7	4356070-4356205	3	PILER-CR	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA	NA|126aa|up_9|NZ_CP053284.1_4346778_4347156_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP053284.1_4347162_4348005_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP053284.1_4348082_4348562_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP053284.1_4348753_4350616_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP053284.1_4350608_4351139_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP053284.1_4351246_4352578_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP053284.1_4352634_4352922_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP053284.1_4352918_4354205_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP053284.1_4354255_4355197_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP053284.1_4355211_4355982_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP053284.1_4356454_4357969_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP053284.1_4357999_4359142_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP053284.1_4359270_4360488_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP053284.1_4360561_4362115_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP053284.1_4362223_4363009_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP053284.1_4363014_4363605_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP053284.1_4363813_4364209_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP053284.1_4364470_4367692_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP053284.1_4367709_4368858_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP053284.1_4369313_4370135_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	8	4363643-4363784	7	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA	NA|96aa|up_9|NZ_CP053284.1_4352634_4352922_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP053284.1_4352918_4354205_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP053284.1_4354255_4355197_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP053284.1_4355211_4355982_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP053284.1_4356454_4357969_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP053284.1_4357999_4359142_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP053284.1_4359270_4360488_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP053284.1_4360561_4362115_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP053284.1_4362223_4363009_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP053284.1_4363014_4363605_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP053284.1_4363813_4364209_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP053284.1_4364470_4367692_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP053284.1_4367709_4368858_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP053284.1_4369313_4370135_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP053284.1_4370301_4371216_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP053284.1_4371281_4372232_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP053284.1_4372233_4372683_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP053284.1_4372807_4373302_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP053284.1_4373301_4376118_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP053284.1_4376160_4377102_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_013315995.1_ASM1331599v1	NZ_CP053284	Escherichia coli strain SCU-104 chromosome, complete genome	9	4553417-4553566	8	CRISPRCasFinder	no		cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,PrimPol,c2c9_V-U4,DEDDh,WYL	NA,NA|532aa|down_6|NZ_CP053284.1_4560661_4562257_-	NA|457aa|up_9|NZ_CP053284.1_4537724_4539095_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|54aa|up_8|NZ_CP053284.1_4539246_4539408_+	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|260aa|up_7|NZ_CP053284.1_4539451_4540231_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|339aa|up_6|NZ_CP053284.1_4541033_4542050_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|422aa|up_5|NZ_CP053284.1_4544917_4546183_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP053284.1_4546649_4547669_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP053284.1_4547798_4549301_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053284.1_4549419_4550502_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053284.1_4550501_4551602_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053284.1_4551868_4553380_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053284.1_4553733_4554177_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053284.1_4554176_4557032_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP053284.1_4557085_4558282_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053284.1_4558474_4558978_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053284.1_4559023_4559440_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053284.1_4559601_4560606_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_6|NZ_CP053284.1_4560661_4562257_-	NA	NA|151aa|down_7|NZ_CP053284.1_4562379_4562832_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053284.1_4562976_4563570_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP053284.1_4563640_4564354_+	PRK12742, PRK12742, SDR family oxidoreductase
