assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013341435.1_ASM1334143v1	NZ_CP054444	Staphylococcus saprophyticus strain UTI-056 chromosome, complete genome	1	5818-5926	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	ATATCAGTGTTTATAGGTGTGACCGAAATAA	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|64aa|up_8|NZ_CP054444.1_528_720_-,NA|112aa|up_7|NZ_CP054444.1_896_1232_-,NA|93aa|up_6|NZ_CP054444.1_1228_1507_-,NA|179aa|up_5|NZ_CP054444.1_1551_2088_-,NA|158aa|up_3|NZ_CP054444.1_3743_4217_-,NA|206aa|up_2|NZ_CP054444.1_4228_4846_-,NA|69aa|up_1|NZ_CP054444.1_4859_5066_-,NA|138aa|up_0|NZ_CP054444.1_5151_5565_-,NA|134aa|down_2|NZ_CP054444.1_8715_9117_-,NA|60aa|down_3|NZ_CP054444.1_9118_9298_-	NA|NA	NA	NA|64aa|up_8|NZ_CP054444.1_528_720_-	NA	NA|112aa|up_7|NZ_CP054444.1_896_1232_-	NA	NA|93aa|up_6|NZ_CP054444.1_1228_1507_-	NA	NA|179aa|up_5|NZ_CP054444.1_1551_2088_-	NA	NA|158aa|up_4|NZ_CP054444.1_2128_2602_-	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|158aa|up_3|NZ_CP054444.1_3743_4217_-	NA	NA|206aa|up_2|NZ_CP054444.1_4228_4846_-	NA	NA|69aa|up_1|NZ_CP054444.1_4859_5066_-	NA	NA|138aa|up_0|NZ_CP054444.1_5151_5565_-	NA	NA|782aa|down_0|NZ_CP054444.1_5958_8304_-	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|98aa|down_1|NZ_CP054444.1_8409_8703_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|134aa|down_2|NZ_CP054444.1_8715_9117_-	NA	NA|60aa|down_3|NZ_CP054444.1_9118_9298_-	NA	NA|73aa|down_4|NZ_CP054444.1_9310_9529_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|74aa|down_5|NZ_CP054444.1_9528_9750_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|110aa|down_6|NZ_CP054444.1_9845_10175_+	pfam01381, HTH_3, Helix-turn-helix	NA|369aa|down_7|NZ_CP054444.1_10439_11546_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|155aa|down_8|NZ_CP054444.1_12120_12585_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|797aa|down_9|NZ_CP054444.1_12607_14998_-	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_013341435.1_ASM1334143v1	NZ_CP054444	Staphylococcus saprophyticus strain UTI-056 chromosome, complete genome	2	846311-846408	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	TTGCATAAGAATCACTAAGGAAATT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA|69aa|down_5|NZ_CP054444.1_852829_853036_+	NA|107aa|up_9|NZ_CP054444.1_836682_837003_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|98aa|up_8|NZ_CP054444.1_837046_837340_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|265aa|up_7|NZ_CP054444.1_837573_838368_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|up_6|NZ_CP054444.1_838351_839071_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_5|NZ_CP054444.1_839067_839799_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|306aa|up_4|NZ_CP054444.1_840751_841669_-	PRK12921, PRK12921, oxidoreductase	NA|252aa|up_3|NZ_CP054444.1_841882_842638_+	pfam02517, Abi, CAAX protease self-immunity	NA|273aa|up_2|NZ_CP054444.1_842979_843798_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|311aa|up_1|NZ_CP054444.1_843841_844774_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|357aa|up_0|NZ_CP054444.1_844939_846010_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|430aa|down_0|NZ_CP054444.1_846415_847705_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|302aa|down_1|NZ_CP054444.1_847922_848828_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|382aa|down_2|NZ_CP054444.1_848824_849970_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|185aa|down_3|NZ_CP054444.1_851453_852008_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|157aa|down_4|NZ_CP054444.1_852181_852652_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|69aa|down_5|NZ_CP054444.1_852829_853036_+	NA	NA|281aa|down_6|NZ_CP054444.1_853122_853965_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_7|NZ_CP054444.1_853965_854580_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|down_8|NZ_CP054444.1_854593_855283_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|151aa|down_9|NZ_CP054444.1_855275_855728_-	PRK13261, ureE, urease accessory protein UreE; Provisional
