assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013344665.1_ASM1334466v1	NZ_CP046113	Enterococcus faecalis strain 092160007-3 chromosome, complete genome	1	1459041-1460000	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9,cas3	WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	Type II-C,Type II-A,Type II-B	GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC,GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC,GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	14,14,14	14	TypeII-C,TypeII-A,TypeII-B	WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	NA,NA	NA|321aa|up_9|NZ_CP046113.1_1450138_1451101_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|119aa|up_8|NZ_CP046113.1_1451135_1451492_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|108aa|up_7|NZ_CP046113.1_1451491_1451815_-	pfam04024, PspC, PspC domain	NA|534aa|up_6|NZ_CP046113.1_1451889_1453491_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|226aa|up_5|NZ_CP046113.1_1453698_1454376_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|284aa|up_4|NZ_CP046113.1_1454390_1455242_-	PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional	NA|270aa|up_3|NZ_CP046113.1_1455159_1455969_-	PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional	NA|295aa|up_2|NZ_CP046113.1_1455985_1456870_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|307aa|up_1|NZ_CP046113.1_1456869_1457790_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|285aa|up_0|NZ_CP046113.1_1457912_1458767_-	TIGR02136, ptsS_2, phosphate binding protein	csn2|353aa|down_0|NZ_CP046113.1_1460077_1461136_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|100aa|down_1|NZ_CP046113.1_1461135_1461435_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|307aa|down_2|NZ_CP046113.1_1461455_1462376_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1151aa|down_3|NZ_CP046113.1_1462581_1466034_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|295aa|down_4|NZ_CP046113.1_1466481_1467366_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|229aa|down_5|NZ_CP046113.1_1467358_1468045_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|367aa|down_6|NZ_CP046113.1_1468150_1469252_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|846aa|down_7|NZ_CP046113.1_1469328_1471866_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|184aa|down_8|NZ_CP046113.1_1472121_1472673_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|229aa|down_9|NZ_CP046113.1_1472811_1473498_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]
GCF_013344665.1_ASM1334466v1	NZ_CP046113	Enterococcus faecalis strain 092160007-3 chromosome, complete genome	2	1677935-1678168	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,TGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	36,36,37	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,3,2	3	Orphan	WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	NA,NA	NA|250aa|up_9|NZ_CP046113.1_1663835_1664585_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|234aa|up_8|NZ_CP046113.1_1664702_1665404_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|808aa|up_7|NZ_CP046113.1_1665534_1667958_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|404aa|up_6|NZ_CP046113.1_1668271_1669483_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_5|NZ_CP046113.1_1669511_1670417_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_4|NZ_CP046113.1_1670538_1671519_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_3|NZ_CP046113.1_1671598_1673365_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_2|NZ_CP046113.1_1673361_1675095_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_1|NZ_CP046113.1_1675099_1676113_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_0|NZ_CP046113.1_1676109_1677528_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|288aa|down_0|NZ_CP046113.1_1678325_1679189_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|750aa|down_1|NZ_CP046113.1_1679273_1681523_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP046113.1_1681485_1681851_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP046113.1_1681948_1682518_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP046113.1_1682650_1683166_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NZ_CP046113.1_1683182_1684421_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|375aa|down_6|NZ_CP046113.1_1684601_1685726_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_7|NZ_CP046113.1_1685951_1686296_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_8|NZ_CP046113.1_1686363_1687509_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|325aa|down_9|NZ_CP046113.1_1687665_1688640_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional
GCF_013344665.1_ASM1334466v1	NZ_CP046113	Enterococcus faecalis strain 092160007-3 chromosome, complete genome	3	2500001-2500074	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9,DEDDh,RT	NA|71aa|up_9|NZ_CP046113.1_2488703_2488916_-,NA	NA|71aa|up_9|NZ_CP046113.1_2488703_2488916_-	NA	NA|289aa|up_8|NZ_CP046113.1_2489084_2489951_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_7|NZ_CP046113.1_2490118_2491423_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_6|NZ_CP046113.1_2491415_2492684_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|150aa|up_5|NZ_CP046113.1_2492892_2493342_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|239aa|up_4|NZ_CP046113.1_2493382_2494099_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|233aa|up_3|NZ_CP046113.1_2494195_2494894_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP046113.1_2495294_2496008_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP046113.1_2496269_2499014_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP046113.1_2499028_2499679_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|198aa|down_0|NZ_CP046113.1_2500140_2500734_+	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|178aa|down_1|NZ_CP046113.1_2501495_2502029_+	pfam02517, Abi, CAAX protease self-immunity	NA|324aa|down_2|NZ_CP046113.1_2502080_2503052_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_3|NZ_CP046113.1_2503226_2503664_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_4|NZ_CP046113.1_2503796_2504351_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_5|NZ_CP046113.1_2504375_2506508_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_6|NZ_CP046113.1_2506539_2509116_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|129aa|down_7|NZ_CP046113.1_2509116_2509503_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_8|NZ_CP046113.1_2509576_2510374_-	pfam13277, YmdB, YmdB-like protein	NA|519aa|down_9|NZ_CP046113.1_2510533_2512090_-	PRK12704, PRK12704, phosphodiesterase; Provisional
