The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	143023	194423	3188924	transposase,tRNA	Bacillus_phage(37.5%)	48	NA	NA
WP_024752864.1|143023_143494_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_024752865.1|143684_145046_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	27.9	8.9e-18
WP_024752866.1|145048_145819_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_024752867.1|145800_146550_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_024752868.1|147316_148444_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_002700578.1|148430_149153_-	rRNA methylase	NA	NA	NA	NA	NA
WP_002700580.1|149409_149955_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_148879331.1|150076_150358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752871.1|150572_151751_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002700584.1|151936_152620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002700590.1|153197_153794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002700592.1|153839_154628_+	RNA polymerase sigma factor WhiG	NA	I1ZBD5	Salisaeta_icosahedral_phage	30.6	9.8e-09
WP_024752872.1|154638_156606_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_024752873.1|156586_156928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174896899.1|157037_157526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174896900.1|158281_158794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148889194.1|158802_159528_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_024752874.1|160156_162355_-	AAA family ATPase	NA	G3MBE0	Bacillus_virus	46.6	7.2e-102
WP_024752875.1|162347_163355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752876.1|163366_164044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896901.1|164210_165092_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	35.5	1.7e-30
WP_002700629.1|165109_165919_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_174896902.1|167143_168751_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_148879327.1|168881_169571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752881.1|169581_170280_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_024752883.1|171786_172908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752884.1|172894_173668_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_044634710.1|173688_174231_+	signal peptidase II	NA	NA	NA	NA	NA
WP_024752886.1|174220_174493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752887.1|174947_176573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752888.1|176983_177817_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002700602.1|177930_178155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752889.1|178215_178776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148889195.1|179009_180263_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_174896903.1|180310_181141_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.8	1.6e-33
WP_174896904.1|181124_181487_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_174896905.1|181498_181699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752894.1|182349_183174_-	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	35.9	3.7e-19
WP_002696371.1|183175_183745_-	cytidylate kinase family protein	NA	NA	NA	NA	NA
WP_002696373.1|183804_184671_-	YicC family protein	NA	NA	NA	NA	NA
WP_002696375.1|184688_186128_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_024752895.1|186934_188923_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_024752184.1|189117_189399_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_174896903.1|190403_191234_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.8	1.6e-33
WP_156009222.1|191263_191428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896906.1|191992_192643_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_156009222.1|193398_193563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174896907.1|193592_194423_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.4	3.0e-32
>prophage 2
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	660048	727140	3188924	integrase,transposase,protease	uncultured_Caudovirales_phage(61.54%)	46	659923:659982	682391:683695
659923:659982	attL	CACTGCTGTCCAATTAAGTAATAAGATCTTTTAAAGAGTTAAGAGCTGTGTTATAATAGT	NA	NA	NA	NA
WP_082048250.1|660048_661212_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_174896957.1|661406_663527_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.2	1.0e-07
WP_024751685.1|664040_664874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896958.1|664867_665473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896959.1|665604_666207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751688.1|666191_666773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897287.1|667152_668685_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.1e-07
WP_174897288.1|669012_670977_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_024752139.1|672382_673528_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_174897289.1|673721_675527_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.5e-07
WP_174896960.1|675952_676681_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_024752137.1|677022_677919_-	site-specific DNA-methyltransferase	NA	A0A1D8KJW7	Synechococcus_phage	44.3	6.5e-41
WP_039943402.1|677911_678778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896961.1|678884_680183_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	39.9	3.7e-61
WP_174897290.1|680470_682114_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.3e-07
WP_082048250.1|682516_683680_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_174896962.1|683680_684634_+	Fic family protein	NA	NA	NA	NA	NA
682391:683695	attR	CACTGCTGTCCAATTAAGTAATAAGATCTTTTAAAGAGTTAAGAGCTGTGTTATAATAGTTTTTGGACAAACATACATACCACAAGGACTTAACTCATGTATCATTGTACTACAATTTTAACACAATTGCTACACCTTACTGACCAACTTGGCTTTAAAAAAATCAGTGCCGAAGAACAAGCAGATAAGCGATATCGACATTTTTCAGCACGTACTCAGCTGTTTACCATGGTCTTTGCACAATTAACAAAACAGAATAGTTTACGTTCAATTGAGCACGCAATATCCAGTGATAATGATTTATATCATGCAGGCATTACCGCAAAAATCACCCGAACAAATCTTGCCCATGCAAATGAATATAGACCAAGTATCATATTTGAAAAATTTTACTTTCATGTGCTTAAGTATTACACAAAGCTCGTAAACAAACCAGTGAATATATTCGGCAAGCATACCAAGCTCATCGATGCAACAACCATCTCATTGAATATTAAGCAATACAAATGGGCAAAATTTAGAAGCACAAAGAGCGGAATAAAAATACATACCCGTTTTGATTATGAAGCAAACTGTGCTGATTATCTTTTTATCACCAATGCGAAAGAACATGAAAACAATACGCTTAAAAACATGCACCTAACAAAACAGGATATTGCTGTTTTTGATCGAGGTTATTTTAATAAGAAACAGTTCTATGAGTTTACAAAGAGTGAAATATCCTTTGTAACAAGACTTAAATCAAATGTTATATACACCGTAGTTGATCGATATGCCGTAAGCGGACATGAAAATGATACGTATAAAATTATCAGTGATGAGAAAATTACTCTGAATGTGAGTATTTCAAAAAAGAAGGAAAGCGTGGTAACACTACGAAAAATCATCTCAAAAGATTTGCAGTCAAAAAAGAAAATAGTATTGCTGACAAATTTGTTTGAAATAGATTCTCTTGAGGTAGCTGAACTGTATAAAAAAAGATGGACCATTGAATTATTCTTCAAGATGATAAAACAGAATCTGAAAATTAAGAAATTTTATGGACATAGCGAAAATGCGGTCAAGACACAGATATGGATTGCCGTTATTACGCATATGCTCTTTTTAATTTTACAAGCTGAAACCAACTATAGGCAAAGGAGCTTTTCATATTTTTGTTCTGAAATTTCTGTCGTACTGTTTCTGCATCGCAGTCTTAAAAAATGGTTTTGTGGTGATCATGAAAAACCAGTTCCTAAATTAATTCACCATCCTAATACCTCAGAGCTTTCTCAAAAGCCTCCAAGTTAATTGGACAGCAGTGAT	NA	NA	NA	NA
WP_024752155.1|684853_686002_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	30.9	5.6e-37
WP_024752156.1|686683_690835_+	TIGR02680 family protein	NA	NA	NA	NA	NA
WP_024752157.1|691057_692944_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.6	6.0e-105
WP_002699611.1|693149_693368_-	cation transporter	NA	NA	NA	NA	NA
WP_024752158.1|693665_694031_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002699602.1|694187_694358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752159.1|694350_695640_+	DUF2399 domain-containing protein	NA	NA	NA	NA	NA
WP_148878572.1|696784_697117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752164.1|699386_701393_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.0	3.6e-07
WP_024752165.1|702051_702675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752166.1|703154_704936_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	37.3	9.0e-111
WP_039943445.1|705049_705778_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_174896963.1|706082_707159_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_024752169.1|708097_710149_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.9	1.3e-07
WP_174897291.1|711010_712162_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.0	3.5e-07
WP_174896964.1|712302_713442_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_024752172.1|713443_713986_+	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	4.7e-10
WP_052335743.1|714047_715301_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_024752174.1|715381_715801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752175.1|715878_716589_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_044634423.1|716844_718029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896965.1|718055_718847_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_024752178.1|719379_720066_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_044634425.1|720201_721557_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_148879194.1|721650_721929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174896966.1|722281_722713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174896967.1|722684_725132_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_174897292.1|725086_725479_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_024752184.1|726858_727140_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	1517073	1565778	3188924	integrase,transposase	Moraxella_phage(16.67%)	37	1553288:1553313	1571503:1571528
WP_148878613.1|1517073_1518327_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_008902116.1|1521007_1521220_+	helix-turn-helix transcriptional regulator	NA	A0A2I7SC34	Paenibacillus_phage	48.3	1.2e-09
WP_174897304.1|1521255_1522545_+	site-specific DNA-methyltransferase	NA	A0A2K5B255	Erysipelothrix_phage	28.6	8.7e-31
WP_024753547.1|1522610_1522892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753548.1|1522919_1523708_+	DUF4111 domain-containing protein	NA	NA	NA	NA	NA
WP_081718841.1|1523761_1524622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753550.1|1524660_1525650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753551.1|1526025_1527093_+	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	38.8	8.2e-59
WP_174897073.1|1527089_1529195_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_024753555.1|1530420_1530582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751818.1|1534245_1535427_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_174897074.1|1535457_1535823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897075.1|1535894_1537115_-	MFS transporter	NA	D0R099	Streptococcus_phage	24.9	2.8e-23
WP_174897076.1|1537118_1538036_-	DUF1848 domain-containing protein	NA	NA	NA	NA	NA
WP_044634501.1|1538569_1538851_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_024751992.1|1539999_1541016_-|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	30.3	9.0e-23
WP_174897077.1|1541118_1541337_-	helix-turn-helix domain-containing protein	NA	A0A1P8BML9	Lactococcus_phage	35.4	2.1e-06
WP_024753570.1|1541415_1541574_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_024753571.1|1541814_1542126_-	DUF3847 domain-containing protein	NA	NA	NA	NA	NA
WP_174897078.1|1542233_1543538_-	type II restriction endonuclease	NA	NA	NA	NA	NA
WP_024753573.1|1543530_1544385_-	DNA adenine methylase	NA	A0A1S5PRR3	Streptococcus_phage	47.9	6.7e-72
WP_024753574.1|1544507_1545287_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_081718842.1|1545393_1545792_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_024753575.1|1546170_1547349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009242836.1|1547363_1547774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753576.1|1547793_1549863_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_156009310.1|1549867_1550011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753577.1|1550437_1551679_+	peptidase T	NA	NA	NA	NA	NA
WP_002694883.1|1551852_1553139_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
1553288:1553313	attL	CAACGGTGAGTAAACTTACCATAGGG	NA	NA	NA	NA
WP_024753579.1|1553435_1555565_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	27.1	7.2e-30
WP_024753580.1|1555557_1556490_+	M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	44.3	8.6e-12
WP_024753581.1|1557592_1559392_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	1.4e-42
WP_174897079.1|1559449_1561258_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.8	5.9e-17
WP_039943996.1|1561975_1564321_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	39.5	7.9e-147
WP_174896884.1|1564674_1564836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752184.1|1564879_1565161_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_174897080.1|1565157_1565778_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
1571503:1571528	attR	CCCTATGGTAAGTTTACTCACCGTTG	NA	NA	NA	NA
>prophage 5
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	1748233	1756973	3188924		Marinitoga_camini_virus(25.0%)	10	NA	NA
WP_024751636.1|1748233_1749013_+	ATP-binding protein	NA	A0A0D4DBZ2	Acinetobacter_phage	25.7	7.9e-11
WP_002697435.1|1750346_1750538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897094.1|1750534_1751332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897095.1|1751353_1753036_+	hypothetical protein	NA	S5MBV8	Brevibacillus_phage	35.8	1.9e-70
WP_174897096.1|1753068_1754610_+	hypothetical protein	NA	A0A0A7NP12	Lactobacillus_phage	27.4	2.3e-14
WP_024751710.1|1754641_1754953_+	hypothetical protein	NA	D2ECI8	Treponema_phage	64.9	2.6e-05
WP_174897097.1|1755047_1755473_+	antA/AntB antirepressor family protein	NA	A0A139ZPI9	Marinitoga_camini_virus	49.1	5.3e-17
WP_174897098.1|1755448_1755772_+	phage antirepressor KilAC domain-containing protein	NA	A0A139ZPI9	Marinitoga_camini_virus	38.0	1.8e-09
WP_174897011.1|1755768_1756647_+	DNA adenine methylase	NA	A0A0H3UZK1	Geobacillus_virus	32.8	2.8e-28
WP_174897012.1|1756643_1756973_+	DUF4406 domain-containing protein	NA	A0A1B0YZW9	Pseudomonas_phage	40.4	1.0e-12
>prophage 6
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	1853737	1916332	3188924	transposase,protease,tRNA	Staphylococcus_phage(20.0%)	55	NA	NA
WP_002699091.1|1853737_1854331_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	38.9	3.1e-31
WP_024752388.1|1856122_1857556_+	amino acid permease	NA	NA	NA	NA	NA
WP_002699081.1|1858295_1859234_+	AEC family transporter	NA	NA	NA	NA	NA
WP_002699078.1|1859716_1860094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002699076.1|1860106_1860973_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	2.0e-18
WP_174897122.1|1860974_1861670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878990.1|1862134_1862461_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_024751882.1|1862421_1862673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634652.1|1862991_1863786_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	36.5	1.6e-43
WP_174897123.1|1863782_1865069_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.9	1.7e-90
WP_024751884.1|1865087_1865669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002698298.1|1866032_1866545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751886.1|1866544_1867294_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA	NA
WP_174897306.1|1867713_1868979_-	DUF3160 domain-containing protein	NA	NA	NA	NA	NA
WP_174897307.1|1868930_1869584_-	DUF3160 domain-containing protein	NA	NA	NA	NA	NA
WP_024751890.1|1870448_1870832_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_024751891.1|1870876_1871506_-	adenylate kinase	NA	NA	NA	NA	NA
WP_081718631.1|1872220_1872409_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002698319.1|1872423_1872660_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_024751892.1|1872678_1873410_+	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	30.3	1.3e-23
WP_024751992.1|1873508_1874525_+|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	30.3	9.0e-23
WP_024751893.1|1874690_1875449_+	acid phosphatase AphA	NA	NA	NA	NA	NA
WP_052812563.1|1875964_1876588_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_174897124.1|1876982_1877702_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_039914919.1|1877691_1878225_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.8	5.8e-21
WP_002698332.1|1878464_1879400_-	TraB/GumN family protein	NA	NA	NA	NA	NA
WP_002698334.1|1879482_1880517_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_024751895.1|1880775_1881603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751896.1|1881617_1882316_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.3e-20
WP_024751897.1|1882318_1882678_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_174897125.1|1883607_1886346_-	pyruvate, phosphate dikinase	NA	NA	NA	NA	NA
WP_024751899.1|1886357_1887380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751900.1|1887479_1889519_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_002698356.1|1889677_1890337_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_002698358.1|1890629_1891862_+	FprA family A-type flavoprotein	NA	NA	NA	NA	NA
WP_024751901.1|1892362_1893949_-|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_024751902.1|1894563_1895055_-	universal stress protein	NA	NA	NA	NA	NA
WP_024751903.1|1895144_1895786_-	V-type ATP synthase subunit D	NA	NA	NA	NA	NA
WP_024751904.1|1895890_1900183_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.0	9.3e-69
WP_002698374.1|1900196_1903721_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	23.0	2.8e-47
WP_024751905.1|1904233_1904623_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_002698382.1|1904759_1905389_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_024751906.1|1905390_1906071_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_002698386.1|1906072_1906504_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_002698388.1|1906586_1907144_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA	NA
WP_024751907.1|1907153_1907333_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_002698390.1|1907471_1907642_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_024751908.1|1908053_1908494_-	flavodoxin	NA	NA	NA	NA	NA
WP_024751909.1|1908516_1909092_-	DUF3793 family protein	NA	NA	NA	NA	NA
WP_148889533.1|1909815_1911069_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_148879384.1|1911335_1912736_+	GntP family permease	NA	NA	NA	NA	NA
WP_024752901.1|1912766_1914320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752900.1|1914391_1914805_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_148889537.1|1915109_1915469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751913.1|1915858_1916332_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	1942650	1949540	3188924		Caulobacter_phage(16.67%)	10	NA	NA
WP_024751945.1|1942650_1944114_-	DNA-packaging protein	NA	A0A0K1LMR9	Caulobacter_phage	33.0	1.0e-51
WP_174897134.1|1944091_1944694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897135.1|1944926_1945070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751949.1|1945195_1945720_-	ASCH domain-containing protein	NA	A0A291AUQ6	Sinorhizobium_phage	26.8	3.9e-06
WP_174897136.1|1946186_1946402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897137.1|1946398_1946728_-	DUF4406 domain-containing protein	NA	A0A1B0YZW9	Pseudomonas_phage	41.5	9.4e-14
WP_174897138.1|1946831_1947653_-	antA/AntB antirepressor family protein	NA	A0A139ZPI9	Marinitoga_camini_virus	42.7	3.0e-37
WP_024751625.1|1947747_1948059_-	hypothetical protein	NA	D2ECI8	Treponema_phage	64.9	2.6e-05
WP_044634724.1|1948116_1948620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897308.1|1948841_1949540_-	site-specific DNA-methyltransferase	NA	A0A2I7QJ51	Vibrio_phage	37.1	1.1e-30
>prophage 8
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	2782658	2855606	3188924	transposase,protease,tRNA	Escherichia_phage(22.22%)	59	NA	NA
WP_044634314.1|2782658_2783705_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_024753096.1|2784167_2784935_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_024753095.1|2784977_2786258_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_004266435.1|2786574_2787102_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_024753094.1|2787361_2788543_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	36.4	5.5e-40
WP_004266433.1|2788921_2789830_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_004266430.1|2790200_2791118_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_148879179.1|2791160_2792804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753092.1|2792877_2794437_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_081718788.1|2794490_2796281_-	phosphotransferase	NA	NA	NA	NA	NA
WP_024753090.1|2796736_2797657_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_174897237.1|2798522_2798696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897238.1|2798729_2799701_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_174897316.1|2799696_2800227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753088.1|2800447_2802025_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_024753085.1|2802510_2803467_+	M28 family peptidase	NA	NA	NA	NA	NA
WP_024753084.1|2803478_2804111_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002699174.1|2804144_2804573_-	GNAT family N-acetyltransferase	NA	Q2WC48	Escherichia_phage	31.3	8.5e-07
WP_024753082.1|2805011_2805701_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_148879450.1|2806031_2806220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879183.1|2806216_2806879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002699166.1|2807177_2807750_+	chromate transporter	NA	NA	NA	NA	NA
WP_002699164.1|2807746_2808310_+	chromate transporter	NA	NA	NA	NA	NA
WP_162147461.1|2808825_2809368_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_024753077.1|2810233_2812705_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	37.6	3.0e-120
WP_002697999.1|2812741_2813227_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_024753074.1|2814112_2815486_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002698671.1|2815554_2816544_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_174897239.1|2816839_2817796_+	hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.1	2.5e-35
WP_039943739.1|2818596_2819001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002698660.1|2818997_2820119_-	ABC transporter	NA	NA	NA	NA	NA
WP_024753071.1|2820119_2821160_-	ABC transporter	NA	NA	NA	NA	NA
WP_024753070.1|2821160_2822741_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	2.5e-11
WP_002698654.1|2822861_2824103_-	DUF3798 domain-containing protein	NA	NA	NA	NA	NA
WP_024753069.1|2825266_2826460_+	coenzyme F420-0:L-glutamate ligase	NA	NA	NA	NA	NA
WP_002700292.1|2827175_2827787_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_024753068.1|2827839_2828988_+	S-methyl-5-thioribose kinase	NA	NA	NA	NA	NA
WP_044634679.1|2829134_2831558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753066.1|2832166_2832961_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
WP_024753065.1|2832953_2833532_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_174897240.1|2834177_2835356_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_024751992.1|2835619_2836636_+|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	30.3	9.0e-23
WP_024753063.1|2836820_2837234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879451.1|2837487_2837616_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
WP_024753062.1|2837756_2838014_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_024753061.1|2838197_2840108_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_024753060.1|2840294_2841209_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002699592.1|2841230_2841977_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002699590.1|2842293_2842866_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_174897241.1|2843637_2844003_+	DUF2715 domain-containing protein	NA	NA	NA	NA	NA
WP_148879210.1|2844343_2845240_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_024753057.1|2845243_2846905_-	glycosyl hydrolase family 3	NA	NA	NA	NA	NA
WP_148879209.1|2846904_2847828_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	44.8	2.1e-74
WP_024753055.1|2848584_2849490_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_024753054.1|2849583_2851131_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002699573.1|2852102_2852915_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002699571.1|2852911_2853718_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	5.0e-08
WP_044634513.1|2853710_2854373_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	26.3	5.3e-08
WP_024751818.1|2854424_2855606_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3188924	2874636	2924502	3188924	capsid,transposase	Micromonas_pusilla_virus(16.67%)	58	NA	NA
WP_174897242.1|2874636_2874879_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_024753035.1|2875271_2875868_+	cytidylate kinase-like family protein	NA	NA	NA	NA	NA
WP_024753034.1|2876064_2877138_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_024753033.1|2877206_2878148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081718782.1|2878144_2878975_-	transketolase	NA	G9E5U1	Micromonas_pusilla_virus	33.3	3.2e-10
WP_024753032.1|2879182_2880451_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_024753031.1|2880535_2880820_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_148879202.1|2881536_2882217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753029.1|2882194_2882920_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_024753028.1|2882921_2883473_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_024753025.1|2884343_2885450_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_044634523.1|2885897_2886980_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_174897317.1|2887089_2889090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753023.1|2889145_2889769_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	8.8e-29
WP_024753022.1|2889768_2891415_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002699542.1|2891429_2892449_-	thiamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002699538.1|2892919_2893885_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_148889730.1|2893915_2894944_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_002699534.1|2894994_2896044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753017.1|2896253_2896868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002699530.1|2896908_2897190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879397.1|2897274_2897451_-	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_148884455.1|2897447_2897783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897243.1|2898051_2898525_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_174896886.1|2898443_2899259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002696721.1|2899383_2899584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753013.1|2899701_2899926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897244.1|2900078_2900666_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_148878579.1|2900655_2900778_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_174897245.1|2901726_2902413_-	site-specific DNA-methyltransferase	NA	A0A1P8CMS8	Staphylococcus_phage	34.7	2.9e-33
WP_024751770.1|2902571_2902757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897275.1|2902740_2903013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879504.1|2904179_2905430_-	DUF935 family protein	NA	NA	NA	NA	NA
WP_002696334.1|2905426_2906953_-	hypothetical protein	NA	A0A0N7AEF1	Bacillus_phage	29.1	9.0e-51
WP_002696333.1|2906949_2907486_-	DUF3486 family protein	NA	NA	NA	NA	NA
WP_024751680.1|2907501_2907792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634729.1|2907818_2908217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897246.1|2908221_2908527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751775.1|2908480_2908843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751776.1|2908826_2909162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751777.1|2909185_2909740_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0B5CTW5	Listeria_phage	35.3	1.4e-22
WP_081718572.1|2909856_2910081_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_148884621.1|2910232_2910679_-	DUF1018 domain-containing protein	NA	A4JWM5	Burkholderia_virus	32.1	5.5e-09
WP_002696309.1|2910758_2911271_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA	NA
WP_002696308.1|2911312_2911507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897247.1|2911511_2912213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897318.1|2912214_2913150_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_174896974.1|2913161_2915042_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_174896938.1|2915575_2916163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878542.1|2916271_2916712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148878543.1|2916723_2917164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174897248.1|2917705_2918473_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002695871.1|2918654_2918945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878545.1|2918931_2919492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897249.1|2919955_2920933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174897250.1|2921274_2922207_+|capsid	major capsid protein	capsid	NA	NA	NA	NA
WP_024752645.1|2922268_2922727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878912.1|2923305_2924502_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
