assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	1	182001-182132	1	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	CTCAATTCTGCTTGGAACCACGGGCGTCCATGCCCGTTCTGATTTTGAC	49	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|91aa|up_8|NZ_CP054692.1_174220_174493_+,NA|542aa|up_7|NZ_CP054692.1_174947_176573_-,NA|75aa|up_5|NZ_CP054692.1_177930_178155_+,NA|187aa|up_4|NZ_CP054692.1_178215_178776_-,NA|121aa|up_1|NZ_CP054692.1_181124_181487_-,NA|67aa|up_0|NZ_CP054692.1_181498_181699_-,NA|55aa|down_7|NZ_CP054692.1_191263_191428_-,NA|55aa|down_9|NZ_CP054692.1_193398_193563_+	NA|181aa|up_9|NZ_CP054692.1_173688_174231_+	PRK01574, lspA, signal peptidase II; Provisional	NA|91aa|up_8|NZ_CP054692.1_174220_174493_+	NA	NA|542aa|up_7|NZ_CP054692.1_174947_176573_-	NA	NA|278aa|up_6|NZ_CP054692.1_176983_177817_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|75aa|up_5|NZ_CP054692.1_177930_178155_+	NA	NA|187aa|up_4|NZ_CP054692.1_178215_178776_-	NA	NA|418aa|up_3|NZ_CP054692.1_179009_180263_+	pfam00665, rve, Integrase core domain	NA|277aa|up_2|NZ_CP054692.1_180310_181141_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|121aa|up_1|NZ_CP054692.1_181124_181487_-	NA	NA|67aa|up_0|NZ_CP054692.1_181498_181699_-	NA	NA|275aa|down_0|NZ_CP054692.1_182349_183174_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|190aa|down_1|NZ_CP054692.1_183175_183745_-	PRK04182, PRK04182, cytidylate kinase; Provisional	NA|289aa|down_2|NZ_CP054692.1_183804_184671_-	PRK11820, PRK11820, YicC family protein	NA|480aa|down_3|NZ_CP054692.1_184688_186128_-	TIGR01082, UDP-N-acetylmuramate--L-alanine_ligase, UDP-N-acetylmuramate--L-alanine ligase	NA|663aa|down_4|NZ_CP054692.1_186934_188923_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|94aa|down_5|NZ_CP054692.1_189117_189399_+	pfam01527, HTH_Tnp_1, Transposase	NA|277aa|down_6|NZ_CP054692.1_190403_191234_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|55aa|down_7|NZ_CP054692.1_191263_191428_-	NA	NA|217aa|down_8|NZ_CP054692.1_191992_192643_-	pfam13551, HTH_29, Winged helix-turn helix	NA|55aa|down_9|NZ_CP054692.1_193398_193563_+	NA
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	2	277614-277708	2	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	TGTCAAAAACTAAACCACGAGTTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|126aa|up_7|NZ_CP054692.1_270483_270861_+,NA|290aa|up_5|NZ_CP054692.1_272079_272949_+,NA|147aa|up_3|NZ_CP054692.1_273277_273718_+,NA	NA|509aa|up_9|NZ_CP054692.1_267108_268635_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|515aa|up_8|NZ_CP054692.1_268641_270186_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|126aa|up_7|NZ_CP054692.1_270483_270861_+	NA	NA|329aa|up_6|NZ_CP054692.1_270857_271844_+	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	NA|290aa|up_5|NZ_CP054692.1_272079_272949_+	NA	NA|106aa|up_4|NZ_CP054692.1_272963_273281_+	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325)	NA|147aa|up_3|NZ_CP054692.1_273277_273718_+	NA	NA|283aa|up_2|NZ_CP054692.1_273785_274634_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|515aa|up_1|NZ_CP054692.1_274639_276184_-	pfam13646, HEAT_2, HEAT repeats	NA|377aa|up_0|NZ_CP054692.1_276193_277324_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|150aa|down_0|NZ_CP054692.1_278241_278691_+	PRK14637, PRK14637, ribosome maturation factor RimP	NA|489aa|down_1|NZ_CP054692.1_278701_280168_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|897aa|down_2|NZ_CP054692.1_280175_282866_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|126aa|down_3|NZ_CP054692.1_283230_283608_+	pfam02033, RBFA, Ribosome-binding factor A	NA|335aa|down_4|NZ_CP054692.1_283594_284599_+	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|277aa|down_5|NZ_CP054692.1_284605_285436_+	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme	NA|90aa|down_6|NZ_CP054692.1_285439_285709_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|701aa|down_7|NZ_CP054692.1_285795_287898_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|147aa|down_8|NZ_CP054692.1_287897_288338_+	PRK00601, dut, dUTP diphosphatase	NA|378aa|down_9|NZ_CP054692.1_288350_289484_+	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	3	676866-676966	3	CRISPRCasFinder	no	csa3	cas3,cas9,csa3,DinG,DEDDh	Type I-A	CTAACATTCGCTTAACCTGCATTTGCG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|278aa|up_8|NZ_CP054692.1_664040_664874_-,NA|201aa|up_6|NZ_CP054692.1_665604_666207_-,NA|194aa|up_5|NZ_CP054692.1_666191_666773_-,NA|289aa|down_1|NZ_CP054692.1_677911_678778_-	NA|707aa|up_9|NZ_CP054692.1_661406_663527_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|278aa|up_8|NZ_CP054692.1_664040_664874_-	NA	NA|202aa|up_7|NZ_CP054692.1_664867_665473_-	pfam03412, Peptidase_C39, Peptidase C39 family	NA|201aa|up_6|NZ_CP054692.1_665604_666207_-	NA	NA|194aa|up_5|NZ_CP054692.1_666191_666773_-	NA	NA|511aa|up_4|NZ_CP054692.1_667152_668685_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|655aa|up_3|NZ_CP054692.1_669012_670977_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|382aa|up_2|NZ_CP054692.1_672382_673528_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|602aa|up_1|NZ_CP054692.1_673721_675527_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|243aa|up_0|NZ_CP054692.1_675952_676681_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|299aa|down_0|NZ_CP054692.1_677022_677919_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|289aa|down_1|NZ_CP054692.1_677911_678778_-	NA	NA|433aa|down_2|NZ_CP054692.1_678884_680183_-	TIGR02249, Integrase/recombinase_E2_protein	NA|548aa|down_3|NZ_CP054692.1_680470_682114_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|388aa|down_4|NZ_CP054692.1_682516_683680_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|318aa|down_5|NZ_CP054692.1_683680_684634_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|383aa|down_6|NZ_CP054692.1_684853_686002_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|1384aa|down_7|NZ_CP054692.1_686683_690835_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|629aa|down_8|NZ_CP054692.1_691057_692944_-	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	NA|73aa|down_9|NZ_CP054692.1_693149_693368_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	4	1108192-1108277	4	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	TAAGCGGCTTAACAAGTTTGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|230aa|up_9|NZ_CP054692.1_1097311_1098001_-,NA|538aa|up_6|NZ_CP054692.1_1099787_1101401_-,NA|128aa|up_3|NZ_CP054692.1_1104567_1104951_+,NA|129aa|up_2|NZ_CP054692.1_1105083_1105470_+,NA|268aa|down_1|NZ_CP054692.1_1110502_1111306_+,NA|348aa|down_2|NZ_CP054692.1_1112307_1113351_+,NA|50aa|down_3|NZ_CP054692.1_1113364_1113514_+,NA|134aa|down_5|NZ_CP054692.1_1114738_1115140_+,NA|72aa|down_6|NZ_CP054692.1_1115497_1115713_+,NA|266aa|down_7|NZ_CP054692.1_1115684_1116482_+,NA|83aa|down_8|NZ_CP054692.1_1116503_1116752_+	NA|230aa|up_9|NZ_CP054692.1_1097311_1098001_-	NA	NA|209aa|up_8|NZ_CP054692.1_1098008_1098635_-	pfam01694, Rhomboid, Rhomboid family	NA|367aa|up_7|NZ_CP054692.1_1098662_1099763_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|538aa|up_6|NZ_CP054692.1_1099787_1101401_-	NA	NA|335aa|up_5|NZ_CP054692.1_1101461_1102466_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|258aa|up_4|NZ_CP054692.1_1102470_1103244_-	TIGR00010, Uncharacterized_deoxyribonuclease_MG009, hydrolase, TatD family	NA|128aa|up_3|NZ_CP054692.1_1104567_1104951_+	NA	NA|129aa|up_2|NZ_CP054692.1_1105083_1105470_+	NA	NA|339aa|up_1|NZ_CP054692.1_1105654_1106671_+	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]	NA|427aa|up_0|NZ_CP054692.1_1106686_1107967_+	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	NA|321aa|down_0|NZ_CP054692.1_1109524_1110487_+	PRK09846, recT, recombination protein RecT	NA|268aa|down_1|NZ_CP054692.1_1110502_1111306_+	NA	NA|348aa|down_2|NZ_CP054692.1_1112307_1113351_+	NA	NA|50aa|down_3|NZ_CP054692.1_1113364_1113514_+	NA	NA|213aa|down_4|NZ_CP054692.1_1113482_1114121_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|134aa|down_5|NZ_CP054692.1_1114738_1115140_+	NA	NA|72aa|down_6|NZ_CP054692.1_1115497_1115713_+	NA	NA|266aa|down_7|NZ_CP054692.1_1115684_1116482_+	NA	NA|83aa|down_8|NZ_CP054692.1_1116503_1116752_+	NA	NA|184aa|down_9|NZ_CP054692.1_1116757_1117309_+	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	5	1282851-1282914	5	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	ATTTCACCCCTATATTTTACCGA	23	1	29	1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891|1282874-1282891	NZ_CP054692.1_5956-5939|NZ_CP054692.1_192748-192731|NZ_CP054692.1_238985-238968|NZ_CP054692.1_401767-401750|NZ_CP054692.1_715406-715389|NZ_CP054692.1_945039-945022|NZ_CP054692.1_1266244-1266227|NZ_CP054692.1_1441542-1441525|NZ_CP054692.1_1518432-1518415|NZ_CP054692.1_1697302-1697285|NZ_CP054692.1_2760852-2760835|NZ_CP054692.1_3002498-3002481|NZ_CP054692.1_3142696-3142679|NZ_CP054692.1_140564-140581|NZ_CP054692.1_178905-178922|NZ_CP054692.1_994055-994072|NZ_CP054692.1_1282833-1282850|NZ_CP054692.1_1425088-1425105|NZ_CP054692.1_1909711-1909728|NZ_CP054692.1_2093445-2093462|NZ_CP054692.1_2159578-2159595|NZ_CP054692.1_2493784-2493801|NZ_CP054692.1_2654425-2654442|NZ_CP054692.1_2673747-2673764|NZ_CP054692.1_2870795-2870812|NZ_CP054692.1_2897947-2897964|NZ_CP054692.1_2943490-2943507|NZ_CP054692.1_2956505-2956522|NZ_CP054692.1_227346-227329	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|403aa|up_8|NZ_CP054692.1_1267815_1269024_-,NA|624aa|up_7|NZ_CP054692.1_1269398_1271270_-,NA|293aa|down_5|NZ_CP054692.1_1289945_1290824_-	NA|139aa|up_9|NZ_CP054692.1_1267338_1267755_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|403aa|up_8|NZ_CP054692.1_1267815_1269024_-	NA	NA|624aa|up_7|NZ_CP054692.1_1269398_1271270_-	NA	NA|860aa|up_6|NZ_CP054692.1_1271397_1273977_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|312aa|up_5|NZ_CP054692.1_1275107_1276043_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|234aa|up_4|NZ_CP054692.1_1276039_1276741_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|343aa|up_3|NZ_CP054692.1_1277097_1278126_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|443aa|up_2|NZ_CP054692.1_1278346_1279675_-	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|386aa|up_1|NZ_CP054692.1_1279766_1280924_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|166aa|up_0|NZ_CP054692.1_1280965_1281463_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|418aa|down_0|NZ_CP054692.1_1282978_1284232_+	pfam13551, HTH_29, Winged helix-turn helix	NA|229aa|down_1|NZ_CP054692.1_1285114_1285801_+	PRK00024, PRK00024, DNA repair protein RadC	NA|752aa|down_2|NZ_CP054692.1_1285856_1288112_-	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|278aa|down_3|NZ_CP054692.1_1288108_1288942_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|154aa|down_4|NZ_CP054692.1_1288941_1289403_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|293aa|down_5|NZ_CP054692.1_1289945_1290824_-	NA	NA|407aa|down_6|NZ_CP054692.1_1291232_1292453_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|391aa|down_7|NZ_CP054692.1_1293146_1294319_+	TIGR00221, N-acetylglucosamine-6-phosphate_deacetylase, N-acetylglucosamine-6-phosphate deacetylase	NA|187aa|down_8|NZ_CP054692.1_1294536_1295097_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|266aa|down_9|NZ_CP054692.1_1295204_1296002_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	6	1405297-1405456	6	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	AAACCTGCGAGTTTTAAAGCTTTACAAATAGTTCTGCTTTAAAACGTCGCT	51	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|208aa|up_7|NZ_CP054692.1_1397738_1398362_+,NA|69aa|up_6|NZ_CP054692.1_1398393_1398600_+,NA|130aa|up_4|NZ_CP054692.1_1401478_1401868_+,NA|149aa|up_2|NZ_CP054692.1_1402967_1403414_-,NA|87aa|up_0|NZ_CP054692.1_1404827_1405088_+,NA|296aa|down_5|NZ_CP054692.1_1410163_1411051_+	NA|910aa|up_9|NZ_CP054692.1_1392475_1395205_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|301aa|up_8|NZ_CP054692.1_1396104_1397007_+	sd00045, ANK, ankyrin repeats	NA|208aa|up_7|NZ_CP054692.1_1397738_1398362_+	NA	NA|69aa|up_6|NZ_CP054692.1_1398393_1398600_+	NA	NA|769aa|up_5|NZ_CP054692.1_1398651_1400958_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|130aa|up_4|NZ_CP054692.1_1401478_1401868_+	NA	NA|331aa|up_3|NZ_CP054692.1_1401937_1402930_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|149aa|up_2|NZ_CP054692.1_1402967_1403414_-	NA	NA|346aa|up_1|NZ_CP054692.1_1403743_1404781_-	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional	NA|87aa|up_0|NZ_CP054692.1_1404827_1405088_+	NA	NA|203aa|down_0|NZ_CP054692.1_1406263_1406872_+	pfam04011, LemA, LemA family	NA|292aa|down_1|NZ_CP054692.1_1406897_1407773_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|259aa|down_2|NZ_CP054692.1_1408078_1408855_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|164aa|down_3|NZ_CP054692.1_1409266_1409758_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|107aa|down_4|NZ_CP054692.1_1409757_1410078_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|296aa|down_5|NZ_CP054692.1_1410163_1411051_+	NA	NA|346aa|down_6|NZ_CP054692.1_1411301_1412339_+	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|412aa|down_7|NZ_CP054692.1_1412407_1413643_+	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|429aa|down_8|NZ_CP054692.1_1413913_1415200_+	cd01116, P_permease, Permease P (pink-eyed dilution)	NA|396aa|down_9|NZ_CP054692.1_1415262_1416450_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	7	1743055-1743140	7	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	TAAGCGGCTTAACAAGTTTGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|346aa|up_5|NZ_CP054692.1_1734683_1735721_+,NA|128aa|up_3|NZ_CP054692.1_1739430_1739814_+,NA|129aa|up_2|NZ_CP054692.1_1739946_1740333_+,NA|268aa|down_1|NZ_CP054692.1_1745365_1746169_+,NA|64aa|down_4|NZ_CP054692.1_1750346_1750538_+,NA|266aa|down_5|NZ_CP054692.1_1750534_1751332_+,NA|514aa|down_7|NZ_CP054692.1_1753068_1754610_+,NA|104aa|down_8|NZ_CP054692.1_1754641_1754953_+	NA|385aa|up_9|NZ_CP054692.1_1729909_1731064_+	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	NA|247aa|up_8|NZ_CP054692.1_1731060_1731801_+	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|229aa|up_7|NZ_CP054692.1_1731811_1732498_+	sd00006, TPR, Tetratricopeptide repeat	NA|686aa|up_6|NZ_CP054692.1_1732494_1734552_+	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|346aa|up_5|NZ_CP054692.1_1734683_1735721_+	NA	NA|406aa|up_4|NZ_CP054692.1_1737387_1738605_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|128aa|up_3|NZ_CP054692.1_1739430_1739814_+	NA	NA|129aa|up_2|NZ_CP054692.1_1739946_1740333_+	NA	NA|339aa|up_1|NZ_CP054692.1_1740517_1741534_+	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]	NA|427aa|up_0|NZ_CP054692.1_1741549_1742830_+	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	NA|321aa|down_0|NZ_CP054692.1_1744387_1745350_+	PRK09846, recT, recombination protein RecT	NA|268aa|down_1|NZ_CP054692.1_1745365_1746169_+	NA	NA|350aa|down_2|NZ_CP054692.1_1747170_1748220_+	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|260aa|down_3|NZ_CP054692.1_1748233_1749013_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|64aa|down_4|NZ_CP054692.1_1750346_1750538_+	NA	NA|266aa|down_5|NZ_CP054692.1_1750534_1751332_+	NA	NA|561aa|down_6|NZ_CP054692.1_1751353_1753036_+	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only]	NA|514aa|down_7|NZ_CP054692.1_1753068_1754610_+	NA	NA|104aa|down_8|NZ_CP054692.1_1754641_1754953_+	NA	NA|142aa|down_9|NZ_CP054692.1_1755047_1755473_+	pfam08346, AntA, AntA/AntB antirepressor
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	8	1789459-1789545	8	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	ACAATCAGCTAACCACATTAAACG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|269aa|up_8|NZ_CP054692.1_1779443_1780250_+,NA|229aa|up_7|NZ_CP054692.1_1780270_1780957_+,NA|370aa|up_6|NZ_CP054692.1_1780953_1782063_+,NA|490aa|up_5|NZ_CP054692.1_1782059_1783529_+,NA|80aa|up_4|NZ_CP054692.1_1783535_1783775_+,NA|191aa|up_3|NZ_CP054692.1_1783725_1784298_+,NA|559aa|up_2|NZ_CP054692.1_1784301_1785978_+,NA|399aa|down_1|NZ_CP054692.1_1791369_1792566_+,NA|126aa|down_5|NZ_CP054692.1_1796876_1797254_-,NA|130aa|down_6|NZ_CP054692.1_1797270_1797660_-,NA|146aa|down_8|NZ_CP054692.1_1798501_1798939_+,NA|122aa|down_9|NZ_CP054692.1_1798898_1799264_+	NA|381aa|up_9|NZ_CP054692.1_1778308_1779451_+	pfam16075, DUF4815, Domain of unknown function (DUF4815)	NA|269aa|up_8|NZ_CP054692.1_1779443_1780250_+	NA	NA|229aa|up_7|NZ_CP054692.1_1780270_1780957_+	NA	NA|370aa|up_6|NZ_CP054692.1_1780953_1782063_+	NA	NA|490aa|up_5|NZ_CP054692.1_1782059_1783529_+	NA	NA|80aa|up_4|NZ_CP054692.1_1783535_1783775_+	NA	NA|191aa|up_3|NZ_CP054692.1_1783725_1784298_+	NA	NA|559aa|up_2|NZ_CP054692.1_1784301_1785978_+	NA	NA|331aa|up_1|NZ_CP054692.1_1786005_1786998_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|638aa|up_0|NZ_CP054692.1_1787183_1789097_+	TIGR02794, Protein_TolA, TolA protein	NA|523aa|down_0|NZ_CP054692.1_1789799_1791368_+	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|399aa|down_1|NZ_CP054692.1_1791369_1792566_+	NA	NA|858aa|down_2|NZ_CP054692.1_1792857_1795431_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|294aa|down_3|NZ_CP054692.1_1795502_1796384_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|159aa|down_4|NZ_CP054692.1_1796421_1796898_-	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion]	NA|126aa|down_5|NZ_CP054692.1_1796876_1797254_-	NA	NA|130aa|down_6|NZ_CP054692.1_1797270_1797660_-	NA	NA|170aa|down_7|NZ_CP054692.1_1797989_1798499_+	cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates	NA|146aa|down_8|NZ_CP054692.1_1798501_1798939_+	NA	NA|122aa|down_9|NZ_CP054692.1_1798898_1799264_+	NA
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	9	1792619-1792770	9	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	48	1	7	1792667-1792722|1792667-1792722|1792667-1792722|1792667-1792722|1792667-1792722|1792667-1792722|1792667-1792722	NZ_CP054692.1_1157327-1157382|NZ_CP054692.1_1157431-1157486|NZ_CP054692.1_2806109-2806054|NZ_CP054692.1_386311-386366|NZ_CP054692.1_1239962-1240017|NZ_CP054692.1_558433-558378|NZ_CP054692.1_1284681-1284736	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|370aa|up_9|NZ_CP054692.1_1780953_1782063_+,NA|490aa|up_8|NZ_CP054692.1_1782059_1783529_+,NA|80aa|up_7|NZ_CP054692.1_1783535_1783775_+,NA|191aa|up_6|NZ_CP054692.1_1783725_1784298_+,NA|559aa|up_5|NZ_CP054692.1_1784301_1785978_+,NA|399aa|up_0|NZ_CP054692.1_1791369_1792566_+,NA|126aa|down_3|NZ_CP054692.1_1796876_1797254_-,NA|130aa|down_4|NZ_CP054692.1_1797270_1797660_-,NA|146aa|down_6|NZ_CP054692.1_1798501_1798939_+,NA|122aa|down_7|NZ_CP054692.1_1798898_1799264_+	NA|370aa|up_9|NZ_CP054692.1_1780953_1782063_+	NA	NA|490aa|up_8|NZ_CP054692.1_1782059_1783529_+	NA	NA|80aa|up_7|NZ_CP054692.1_1783535_1783775_+	NA	NA|191aa|up_6|NZ_CP054692.1_1783725_1784298_+	NA	NA|559aa|up_5|NZ_CP054692.1_1784301_1785978_+	NA	NA|331aa|up_4|NZ_CP054692.1_1786005_1786998_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|638aa|up_3|NZ_CP054692.1_1787183_1789097_+	TIGR02794, Protein_TolA, TolA protein	NA|223aa|up_2|NZ_CP054692.1_1789121_1789790_+	sd00031, LRR_1, leucine-rich repeats	NA|523aa|up_1|NZ_CP054692.1_1789799_1791368_+	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|399aa|up_0|NZ_CP054692.1_1791369_1792566_+	NA	NA|858aa|down_0|NZ_CP054692.1_1792857_1795431_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|294aa|down_1|NZ_CP054692.1_1795502_1796384_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|159aa|down_2|NZ_CP054692.1_1796421_1796898_-	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion]	NA|126aa|down_3|NZ_CP054692.1_1796876_1797254_-	NA	NA|130aa|down_4|NZ_CP054692.1_1797270_1797660_-	NA	NA|170aa|down_5|NZ_CP054692.1_1797989_1798499_+	cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates	NA|146aa|down_6|NZ_CP054692.1_1798501_1798939_+	NA	NA|122aa|down_7|NZ_CP054692.1_1798898_1799264_+	NA	NA|179aa|down_8|NZ_CP054692.1_1799338_1799875_-	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|183aa|down_9|NZ_CP054692.1_1799882_1800431_-	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	10	2131264-2131398	10	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|139aa|up_4|NZ_CP054692.1_2123869_2124286_+,NA|179aa|down_3|NZ_CP054692.1_2135096_2135633_+,NA|64aa|down_6|NZ_CP054692.1_2137516_2137708_+,NA|403aa|down_7|NZ_CP054692.1_2137733_2138942_+,NA|104aa|down_9|NZ_CP054692.1_2140694_2141006_+	NA|802aa|up_9|NZ_CP054692.1_2118096_2120502_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|318aa|up_8|NZ_CP054692.1_2120498_2121452_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|268aa|up_7|NZ_CP054692.1_2121451_2122255_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|176aa|up_6|NZ_CP054692.1_2122749_2123277_+	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|198aa|up_5|NZ_CP054692.1_2123273_2123867_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|139aa|up_4|NZ_CP054692.1_2123869_2124286_+	NA	NA|70aa|up_3|NZ_CP054692.1_2125297_2125507_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|168aa|up_2|NZ_CP054692.1_2125604_2126108_+	PRK00150, def, peptide deformylase; Reviewed	NA|323aa|up_1|NZ_CP054692.1_2126107_2127076_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|1185aa|up_0|NZ_CP054692.1_2127408_2130963_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|80aa|down_0|NZ_CP054692.1_2131594_2131834_+	pfam04023, FeoA, FeoA domain	NA|77aa|down_1|NZ_CP054692.1_2131991_2132222_+	pfam04023, FeoA, FeoA domain	NA|942aa|down_2|NZ_CP054692.1_2132218_2135044_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|179aa|down_3|NZ_CP054692.1_2135096_2135633_+	NA	NA|343aa|down_4|NZ_CP054692.1_2135629_2136658_+	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|273aa|down_5|NZ_CP054692.1_2136689_2137508_+	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|64aa|down_6|NZ_CP054692.1_2137516_2137708_+	NA	NA|403aa|down_7|NZ_CP054692.1_2137733_2138942_+	NA	NA|400aa|down_8|NZ_CP054692.1_2139059_2140259_+	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|104aa|down_9|NZ_CP054692.1_2140694_2141006_+	NA
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	11	2212470-2212558	11	CRISPRCasFinder	no	cas3	cas3,cas9,csa3,DinG,DEDDh	Unclear	TTGGAACCACGGGCGTCCGTGCCC	24	1	2	2212494-2212534|2212494-2212534	NZ_CP054692.1_1861897-1861937|NZ_CP054692.1_2483921-2483961	NA	1	1	Unclear	cas3,cas9,csa3,DinG,DEDDh	NA|303aa|up_9|NZ_CP054692.1_2196357_2197266_+,NA|341aa|up_4|NZ_CP054692.1_2203571_2204594_-,NA	NA|303aa|up_9|NZ_CP054692.1_2196357_2197266_+	NA	NA|482aa|up_8|NZ_CP054692.1_2197265_2198711_+	pfam01973, MAF_flag10, Protein of unknown function DUF115	NA|508aa|up_7|NZ_CP054692.1_2198703_2200227_+	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|453aa|up_6|NZ_CP054692.1_2200223_2201582_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|368aa|up_5|NZ_CP054692.1_2202465_2203569_-	sd00006, TPR, Tetratricopeptide repeat	NA|341aa|up_4|NZ_CP054692.1_2203571_2204594_-	NA	NA|319aa|up_3|NZ_CP054692.1_2204594_2205551_-	cd15830, BamD, BamD lipoprotein, a component of the beta-barrel assembly machinery	NA|210aa|up_2|NZ_CP054692.1_2205547_2206177_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|512aa|up_1|NZ_CP054692.1_2206393_2207929_+	TIGR03319, RNase_Y, ribonuclease Y	NA|625aa|up_0|NZ_CP054692.1_2210432_2212307_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|479aa|down_0|NZ_CP054692.1_2212616_2214053_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|395aa|down_1|NZ_CP054692.1_2214214_2215399_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|694aa|down_2|NZ_CP054692.1_2215594_2217676_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|186aa|down_3|NZ_CP054692.1_2217875_2218433_+	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147)	NA|705aa|down_4|NZ_CP054692.1_2218434_2220549_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|362aa|down_5|NZ_CP054692.1_2220529_2221615_-	pfam00012, HSP70, Hsp70 protein	NA|119aa|down_6|NZ_CP054692.1_2222592_2222949_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|194aa|down_7|NZ_CP054692.1_2222911_2223493_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|405aa|down_8|NZ_CP054692.1_2223582_2224797_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	cas3|735aa|down_9|NZ_CP054692.1_2226206_2228411_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	12	2283413-2283561	12	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	47	1	23	2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514|2283460-2283514	NZ_CP054692.1_787938-787992|NZ_CP054692.1_1727992-1728046|NZ_CP054692.1_2102834-2102780|NZ_CP054692.1_2284065-2284119|NZ_CP054692.1_2424954-2424900|NZ_CP054692.1_2721079-2721025|NZ_CP054692.1_502746-502800|NZ_CP054692.1_1056135-1056081|NZ_CP054692.1_2086838-2086784|NZ_CP054692.1_2201990-2202044|NZ_CP054692.1_3104748-3104694|NZ_CP054692.1_833070-833016|NZ_CP054692.1_1103980-1103926|NZ_CP054692.1_1263069-1263015|NZ_CP054692.1_1314897-1314843|NZ_CP054692.1_1405842-1405788|NZ_CP054692.1_1723416-1723362|NZ_CP054692.1_2086047-2085993|NZ_CP054692.1_2086245-2086191|NZ_CP054692.1_2086443-2086389|NZ_CP054692.1_2086641-2086587|NZ_CP054692.1_2723975-2724029|NZ_CP054692.1_3017419-3017365	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|267aa|up_6|NZ_CP054692.1_2272253_2273054_-,NA|123aa|down_1|NZ_CP054692.1_2284876_2285245_+,NA|157aa|down_3|NZ_CP054692.1_2285886_2286357_+	NA|468aa|up_9|NZ_CP054692.1_2268261_2269665_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|327aa|up_8|NZ_CP054692.1_2269664_2270645_-	cd03393, PAP2_like_3, PAP2_like_3 proteins	NA|399aa|up_7|NZ_CP054692.1_2271056_2272253_-	pfam13023, HD_3, HD domain	NA|267aa|up_6|NZ_CP054692.1_2272253_2273054_-	NA	NA|563aa|up_5|NZ_CP054692.1_2273111_2274800_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|291aa|up_4|NZ_CP054692.1_2275389_2276262_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|341aa|up_3|NZ_CP054692.1_2276274_2277297_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|158aa|up_2|NZ_CP054692.1_2277300_2277774_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|692aa|up_1|NZ_CP054692.1_2279991_2282067_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|176aa|up_0|NZ_CP054692.1_2282440_2282968_+	pfam14343, PrcB_C, PrcB C-terminal	NA|154aa|down_0|NZ_CP054692.1_2284365_2284827_+	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|123aa|down_1|NZ_CP054692.1_2284876_2285245_+	NA	NA|220aa|down_2|NZ_CP054692.1_2285237_2285897_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|157aa|down_3|NZ_CP054692.1_2285886_2286357_+	NA	NA|161aa|down_4|NZ_CP054692.1_2286687_2287170_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|398aa|down_5|NZ_CP054692.1_2287166_2288360_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|654aa|down_6|NZ_CP054692.1_2288356_2290318_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|down_7|NZ_CP054692.1_2290426_2292145_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|down_8|NZ_CP054692.1_2293149_2293857_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|down_9|NZ_CP054692.1_2294651_2295944_-	PRK08637, PRK08637, hypothetical protein; Provisional
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	13	2302848-2302960	13	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	CTGCGTGGAACCACCGCCGTCCATGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA,NA	NA|654aa|up_9|NZ_CP054692.1_2288356_2290318_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|up_8|NZ_CP054692.1_2290426_2292145_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|up_7|NZ_CP054692.1_2293149_2293857_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|up_6|NZ_CP054692.1_2294651_2295944_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_5|NZ_CP054692.1_2296008_2297001_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|282aa|up_4|NZ_CP054692.1_2296963_2297809_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|135aa|up_3|NZ_CP054692.1_2297801_2298206_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|104aa|up_2|NZ_CP054692.1_2298219_2298531_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|553aa|up_1|NZ_CP054692.1_2298561_2300220_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|490aa|up_0|NZ_CP054692.1_2300697_2302167_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|495aa|down_0|NZ_CP054692.1_2303045_2304530_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|917aa|down_1|NZ_CP054692.1_2304939_2307690_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|592aa|down_2|NZ_CP054692.1_2308138_2309914_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_3|NZ_CP054692.1_2310567_2311758_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|400aa|down_4|NZ_CP054692.1_2311887_2313087_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|400aa|down_5|NZ_CP054692.1_2313236_2314436_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|1203aa|down_6|NZ_CP054692.1_2314924_2318533_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|499aa|down_7|NZ_CP054692.1_2318917_2320414_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|515aa|down_8|NZ_CP054692.1_2320427_2321972_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|316aa|down_9|NZ_CP054692.1_2322881_2323829_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	14	2362055-2362144	14	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	TTTTGACACGGACGTCAAAAACT	23	1	1	2362078-2362121	NZ_CP054692.1_2732201-2732158	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|307aa|up_9|NZ_CP054692.1_2350634_2351555_-,NA|49aa|down_4|NZ_CP054692.1_2368786_2368933_+,NA|240aa|down_9|NZ_CP054692.1_2377552_2378272_-	NA|307aa|up_9|NZ_CP054692.1_2350634_2351555_-	NA	NA|119aa|up_8|NZ_CP054692.1_2351561_2351918_-	pfam01245, Ribosomal_L19, Ribosomal protein L19	NA|243aa|up_7|NZ_CP054692.1_2351914_2352643_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|175aa|up_6|NZ_CP054692.1_2352639_2353164_-	COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]	NA|78aa|up_5|NZ_CP054692.1_2353182_2353416_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|83aa|up_4|NZ_CP054692.1_2353434_2353683_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|470aa|up_3|NZ_CP054692.1_2354294_2355704_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|237aa|up_2|NZ_CP054692.1_2355925_2356636_-	cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins	NA|1092aa|up_1|NZ_CP054692.1_2356857_2360133_+	sd00006, TPR, Tetratricopeptide repeat	NA|394aa|up_0|NZ_CP054692.1_2360587_2361769_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|502aa|down_0|NZ_CP054692.1_2362197_2363703_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|down_1|NZ_CP054692.1_2364524_2365127_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|down_2|NZ_CP054692.1_2365165_2366881_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|down_3|NZ_CP054692.1_2366880_2368611_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|49aa|down_4|NZ_CP054692.1_2368786_2368933_+	NA	NA|404aa|down_5|NZ_CP054692.1_2372491_2373703_+	pfam03486, HI0933_like, HI0933-like protein	NA|614aa|down_6|NZ_CP054692.1_2374239_2376081_-	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|125aa|down_7|NZ_CP054692.1_2376619_2376994_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|down_8|NZ_CP054692.1_2377005_2377476_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|240aa|down_9|NZ_CP054692.1_2377552_2378272_-	NA
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	15	2458955-2459072	15	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	AGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|151aa|up_3|NZ_CP054692.1_2452379_2452832_+,NA|107aa|up_0|NZ_CP054692.1_2457612_2457933_+,NA|602aa|down_1|NZ_CP054692.1_2460939_2462745_+,NA|281aa|down_2|NZ_CP054692.1_2462853_2463696_+,NA|219aa|down_3|NZ_CP054692.1_2463931_2464588_+,NA|164aa|down_4|NZ_CP054692.1_2465793_2466285_+	NA|186aa|up_9|NZ_CP054692.1_2443236_2443794_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|130aa|up_8|NZ_CP054692.1_2444578_2444968_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|239aa|up_7|NZ_CP054692.1_2444964_2445681_+	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]	NA|149aa|up_6|NZ_CP054692.1_2446230_2446677_+	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|681aa|up_5|NZ_CP054692.1_2447519_2449562_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|416aa|up_4|NZ_CP054692.1_2450079_2451327_-	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism]	NA|151aa|up_3|NZ_CP054692.1_2452379_2452832_+	NA	NA|677aa|up_2|NZ_CP054692.1_2453768_2455799_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|218aa|up_1|NZ_CP054692.1_2456461_2457115_+	pfam10476, DUF2448, Protein of unknown function C-terminus (DUF2448)	NA|107aa|up_0|NZ_CP054692.1_2457612_2457933_+	NA	NA|117aa|down_0|NZ_CP054692.1_2460229_2460580_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|602aa|down_1|NZ_CP054692.1_2460939_2462745_+	NA	NA|281aa|down_2|NZ_CP054692.1_2462853_2463696_+	NA	NA|219aa|down_3|NZ_CP054692.1_2463931_2464588_+	NA	NA|164aa|down_4|NZ_CP054692.1_2465793_2466285_+	NA	NA|236aa|down_5|NZ_CP054692.1_2466326_2467034_+	cd17534, REC_DC-like, phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains	NA|351aa|down_6|NZ_CP054692.1_2467030_2468083_+	COG1536, FliG, Flagellar motor switch protein [Cell motility and secretion]	NA|997aa|down_7|NZ_CP054692.1_2468070_2471061_+	COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	NA|278aa|down_8|NZ_CP054692.1_2471583_2472417_+	cd16422, HAD_Pase_UmpH-like, uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid dehalogenase-like superfamily	NA|440aa|down_9|NZ_CP054692.1_2472488_2473808_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	16	2506257-2506342	16	CRISPRCasFinder	no	DEDDh	cas3,cas9,csa3,DinG,DEDDh	Unclear	TAAGCGGCTTAACAAGTTTGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|128aa|up_2|NZ_CP054692.1_2502633_2503017_+,NA|129aa|up_1|NZ_CP054692.1_2503149_2503536_+,NA|268aa|down_1|NZ_CP054692.1_2508513_2509317_+,NA|348aa|down_2|NZ_CP054692.1_2510315_2511359_+,NA|120aa|down_5|NZ_CP054692.1_2512639_2512999_+,NA|64aa|down_6|NZ_CP054692.1_2513334_2513526_+,NA|266aa|down_7|NZ_CP054692.1_2513522_2514320_+	NA|569aa|up_9|NZ_CP054692.1_2489985_2491692_+	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|602aa|up_8|NZ_CP054692.1_2491705_2493511_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|418aa|up_7|NZ_CP054692.1_2493888_2495142_+	pfam13551, HTH_29, Winged helix-turn helix	NA|335aa|up_6|NZ_CP054692.1_2497003_2498008_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|348aa|up_5|NZ_CP054692.1_2498004_2499048_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|251aa|up_4|NZ_CP054692.1_2499044_2499797_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|413aa|up_3|NZ_CP054692.1_2500561_2501800_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|128aa|up_2|NZ_CP054692.1_2502633_2503017_+	NA	NA|129aa|up_1|NZ_CP054692.1_2503149_2503536_+	NA	NA|427aa|up_0|NZ_CP054692.1_2504751_2506032_+	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	DEDDh|191aa|down_0|NZ_CP054692.1_2506969_2507542_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|268aa|down_1|NZ_CP054692.1_2508513_2509317_+	NA	NA|348aa|down_2|NZ_CP054692.1_2510315_2511359_+	NA	NA|260aa|down_3|NZ_CP054692.1_2511372_2512152_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|133aa|down_4|NZ_CP054692.1_2512221_2512620_+	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|120aa|down_5|NZ_CP054692.1_2512639_2512999_+	NA	NA|64aa|down_6|NZ_CP054692.1_2513334_2513526_+	NA	NA|266aa|down_7|NZ_CP054692.1_2513522_2514320_+	NA	NA|561aa|down_8|NZ_CP054692.1_2514341_2516024_+	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only]	NA|486aa|down_9|NZ_CP054692.1_2516056_2517514_+	pfam04860, Phage_portal, Phage portal protein
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	17	2556025-2556176	17	CRISPRCasFinder	no	DinG	cas3,cas9,csa3,DinG,DEDDh	Type IV-A	GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	48	1	7	2556073-2556128|2556073-2556128|2556073-2556128|2556073-2556128|2556073-2556128|2556073-2556128|2556073-2556128	NZ_CP054692.1_1157327-1157382|NZ_CP054692.1_1157431-1157486|NZ_CP054692.1_2806109-2806054|NZ_CP054692.1_386311-386366|NZ_CP054692.1_1239962-1240017|NZ_CP054692.1_558433-558378|NZ_CP054692.1_1284681-1284736	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|490aa|up_9|NZ_CP054692.1_2545861_2547331_+,NA|177aa|up_8|NZ_CP054692.1_2547337_2547868_+,NA|107aa|up_7|NZ_CP054692.1_2547824_2548145_+,NA|113aa|up_6|NZ_CP054692.1_2548148_2548487_+,NA|455aa|up_5|NZ_CP054692.1_2548459_2549824_+,NA|399aa|up_0|NZ_CP054692.1_2554775_2555972_+,NA|791aa|down_0|NZ_CP054692.1_2556263_2558636_+	NA|490aa|up_9|NZ_CP054692.1_2545861_2547331_+	NA	NA|177aa|up_8|NZ_CP054692.1_2547337_2547868_+	NA	NA|107aa|up_7|NZ_CP054692.1_2547824_2548145_+	NA	NA|113aa|up_6|NZ_CP054692.1_2548148_2548487_+	NA	NA|455aa|up_5|NZ_CP054692.1_2548459_2549824_+	NA	NA|275aa|up_4|NZ_CP054692.1_2549851_2550676_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|636aa|up_3|NZ_CP054692.1_2551030_2552938_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|298aa|up_2|NZ_CP054692.1_2552962_2553856_+	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|303aa|up_1|NZ_CP054692.1_2553865_2554774_+	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|399aa|up_0|NZ_CP054692.1_2554775_2555972_+	NA	NA|791aa|down_0|NZ_CP054692.1_2556263_2558636_+	NA	NA|94aa|down_1|NZ_CP054692.1_2558710_2558992_+	pfam01527, HTH_Tnp_1, Transposase	NA|126aa|down_2|NZ_CP054692.1_2560113_2560491_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|299aa|down_3|NZ_CP054692.1_2560487_2561384_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|189aa|down_4|NZ_CP054692.1_2561424_2561991_+	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family	NA|274aa|down_5|NZ_CP054692.1_2562402_2563224_-	COG1146, COG1146, Ferredoxin [Energy production and conversion]	DinG|695aa|down_6|NZ_CP054692.1_2563260_2565345_-	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|380aa|down_7|NZ_CP054692.1_2565550_2566690_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|587aa|down_8|NZ_CP054692.1_2567472_2569233_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|down_9|NZ_CP054692.1_2569232_2570639_+	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	18	2637935-2638082	18	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA,NA	NA|112aa|up_9|NZ_CP054692.1_2626705_2627041_-	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|168aa|up_8|NZ_CP054692.1_2627037_2627541_-	cd00886, MogA_MoaB, MogA_MoaB family	NA|147aa|up_7|NZ_CP054692.1_2627519_2627960_-	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein	NA|323aa|up_6|NZ_CP054692.1_2627960_2628929_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|159aa|up_5|NZ_CP054692.1_2628909_2629386_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|324aa|up_4|NZ_CP054692.1_2629382_2630354_-	cd03522, MoeA_like, MoeA_like	NA|315aa|up_3|NZ_CP054692.1_2630384_2631329_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|850aa|up_2|NZ_CP054692.1_2631656_2634206_-	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase	NA|459aa|up_1|NZ_CP054692.1_2634291_2635668_-	TIGR03173, pbuX, xanthine permease	NA|441aa|up_0|NZ_CP054692.1_2636234_2637557_-	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|561aa|down_0|NZ_CP054692.1_2638305_2639988_-	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|401aa|down_1|NZ_CP054692.1_2640009_2641212_-	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|441aa|down_2|NZ_CP054692.1_2641319_2642642_-	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|398aa|down_3|NZ_CP054692.1_2642660_2643854_-	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW	NA|222aa|down_4|NZ_CP054692.1_2643883_2644549_-	pfam08348, PAS_6, YheO-like PAS domain	NA|470aa|down_5|NZ_CP054692.1_2644677_2646087_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|449aa|down_6|NZ_CP054692.1_2646283_2647630_-	pfam13941, MutL, MutL protein	NA|208aa|down_7|NZ_CP054692.1_2647629_2648253_-	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|559aa|down_8|NZ_CP054692.1_2648647_2650324_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|298aa|down_9|NZ_CP054692.1_2650325_2651219_-	TIGR02024, FtcD, glutamate formiminotransferase
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	19	2966539-2966808	1	PILER-CR	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	CGAGTTTTAAAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	48	2	2	2966587-2966649|2966698-2966760	NZ_CP054692.1_251083-251021|NZ_CP054692.1_251083-251021	NA	2	2	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|305aa|up_9|NZ_CP054692.1_2952751_2953666_-,NA|253aa|up_8|NZ_CP054692.1_2954638_2955397_+,NA|162aa|up_7|NZ_CP054692.1_2955477_2955963_-,NA|594aa|up_0|NZ_CP054692.1_2964604_2966386_-,NA|73aa|down_0|NZ_CP054692.1_2967095_2967314_-	NA|305aa|up_9|NZ_CP054692.1_2952751_2953666_-	NA	NA|253aa|up_8|NZ_CP054692.1_2954638_2955397_+	NA	NA|162aa|up_7|NZ_CP054692.1_2955477_2955963_-	NA	NA|94aa|up_6|NZ_CP054692.1_2956129_2956411_-	pfam13146, TRL, TRL-like protein family	NA|418aa|up_5|NZ_CP054692.1_2956609_2957863_+	pfam13551, HTH_29, Winged helix-turn helix	NA|331aa|up_4|NZ_CP054692.1_2959961_2960954_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|205aa|up_3|NZ_CP054692.1_2960974_2961589_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|134aa|up_2|NZ_CP054692.1_2961598_2962000_+	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit	NA|617aa|up_1|NZ_CP054692.1_2962735_2964586_-	COG0557, VacB, Exoribonuclease R [Transcription]	NA|594aa|up_0|NZ_CP054692.1_2964604_2966386_-	NA	NA|73aa|down_0|NZ_CP054692.1_2967095_2967314_-	NA	NA|250aa|down_1|NZ_CP054692.1_2967351_2968101_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|536aa|down_2|NZ_CP054692.1_2968223_2969831_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|233aa|down_3|NZ_CP054692.1_2969824_2970523_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|185aa|down_4|NZ_CP054692.1_2970519_2971074_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|206aa|down_5|NZ_CP054692.1_2971079_2971697_-	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|388aa|down_6|NZ_CP054692.1_2972412_2973576_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|687aa|down_7|NZ_CP054692.1_2973650_2975711_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|156aa|down_8|NZ_CP054692.1_2975700_2976168_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|278aa|down_9|NZ_CP054692.1_2976173_2977007_+	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase
GCF_013348685.1_ASM1334868v1	NZ_CP054692	Treponema phagedenis strain KS1 chromosome, complete genome	20	3053273-3053383	19	CRISPRCasFinder	no		cas3,cas9,csa3,DinG,DEDDh	Orphan	GTTCCAAACAGAAACGATGTTTTAAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,csa3,DinG,DEDDh	NA|57aa|up_6|NZ_CP054692.1_3039718_3039889_-,NA|552aa|up_4|NZ_CP054692.1_3042863_3044519_+,NA|86aa|up_3|NZ_CP054692.1_3044554_3044812_-,NA|241aa|down_6|NZ_CP054692.1_3065611_3066334_+,NA|187aa|down_8|NZ_CP054692.1_3067864_3068425_+	NA|223aa|up_9|NZ_CP054692.1_3036207_3036876_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|614aa|up_8|NZ_CP054692.1_3037035_3038877_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|186aa|up_7|NZ_CP054692.1_3038933_3039491_+	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|57aa|up_6|NZ_CP054692.1_3039718_3039889_-	NA	NA|756aa|up_5|NZ_CP054692.1_3040426_3042694_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|552aa|up_4|NZ_CP054692.1_3042863_3044519_+	NA	NA|86aa|up_3|NZ_CP054692.1_3044554_3044812_-	NA	NA|943aa|up_2|NZ_CP054692.1_3045102_3047931_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|423aa|up_1|NZ_CP054692.1_3048804_3050073_+	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|818aa|up_0|NZ_CP054692.1_3050528_3052982_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|413aa|down_0|NZ_CP054692.1_3053542_3054781_-	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|421aa|down_1|NZ_CP054692.1_3055490_3056753_+	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|251aa|down_2|NZ_CP054692.1_3056833_3057586_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|612aa|down_3|NZ_CP054692.1_3057644_3059480_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|392aa|down_4|NZ_CP054692.1_3060285_3061461_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|611aa|down_5|NZ_CP054692.1_3061811_3063644_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|241aa|down_6|NZ_CP054692.1_3065611_3066334_+	NA	NA|396aa|down_7|NZ_CP054692.1_3066351_3067539_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|187aa|down_8|NZ_CP054692.1_3067864_3068425_+	NA	NA|341aa|down_9|NZ_CP054692.1_3068485_3069508_-	COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
