assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013348825.1_ASM1334882v1	NZ_CP054657	Lactobacillus reuteri strain AN417 chromosome, complete genome	1	995345-995460	1	CRISPRCasFinder	no		csa3,cas14j,cas3,RT,DinG,DEDDh	Orphan	AATACTTCTACAAGTGAATCAACAACTAGTAC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,cas3,RT,DinG,DEDDh	NA|75aa|up_9|NZ_CP054657.1_982375_982600_+,NA|66aa|up_0|NZ_CP054657.1_994541_994739_+,NA|171aa|down_7|NZ_CP054657.1_1004820_1005333_+,NA|79aa|down_8|NZ_CP054657.1_1005365_1005602_-	NA|75aa|up_9|NZ_CP054657.1_982375_982600_+	NA	NA|336aa|up_8|NZ_CP054657.1_983205_984213_+	PRK09814, PRK09814, sugar transferase	NA|397aa|up_7|NZ_CP054657.1_984232_985423_+	TIGR02920, preprotein_translocase_SecY_family_protein, accessory Sec system translocase SecY2	NA|504aa|up_6|NZ_CP054657.1_985425_986937_+	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|496aa|up_5|NZ_CP054657.1_986948_988436_+	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|296aa|up_4|NZ_CP054657.1_988438_989326_+	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3	NA|783aa|up_3|NZ_CP054657.1_989329_991678_+	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|513aa|up_2|NZ_CP054657.1_991692_993231_+	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|442aa|up_1|NZ_CP054657.1_993223_994549_+	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|66aa|up_0|NZ_CP054657.1_994541_994739_+	NA	NA|578aa|down_0|NZ_CP054657.1_995680_997414_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|230aa|down_1|NZ_CP054657.1_997532_998222_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|407aa|down_2|NZ_CP054657.1_998160_999381_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|468aa|down_3|NZ_CP054657.1_999499_1000903_-	pfam03577, Peptidase_C69, Peptidase family C69	NA|610aa|down_4|NZ_CP054657.1_1001041_1002871_+	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|62aa|down_5|NZ_CP054657.1_1002953_1003139_+	PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional	NA|501aa|down_6|NZ_CP054657.1_1003273_1004776_+	PRK00047, glpK, glycerol kinase GlpK	NA|171aa|down_7|NZ_CP054657.1_1004820_1005333_+	NA	NA|79aa|down_8|NZ_CP054657.1_1005365_1005602_-	NA	NA|334aa|down_9|NZ_CP054657.1_1006717_1007719_+	PRK09379, PRK09379, LytR family transcriptional regulator
GCF_013348825.1_ASM1334882v1	NZ_CP054657	Lactobacillus reuteri strain AN417 chromosome, complete genome	2	1811446-1811852	2	CRISPRCasFinder	no		csa3,cas14j,cas3,RT,DinG,DEDDh	Orphan	GATGGGTTAGTAGGTGTTGTAGG	23	0	0	NA	NA	NA	7	7	Orphan	csa3,cas14j,cas3,RT,DinG,DEDDh	NA|63aa|up_4|NZ_CP054657.1_1800001_1800190_+,NA|63aa|down_1|NZ_CP054657.1_1813573_1813762_-,NA|323aa|down_3|NZ_CP054657.1_1827159_1828128_-,NA|230aa|down_4|NZ_CP054657.1_1828120_1828810_-,NA|176aa|down_5|NZ_CP054657.1_1828793_1829321_-	NA|500aa|up_9|NZ_CP054657.1_1792854_1794354_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|234aa|up_8|NZ_CP054657.1_1794566_1795268_-	pfam12182, DUF3642, Bacterial lipoprotein	NA|110aa|up_7|NZ_CP054657.1_1796947_1797277_-	PTZ00450, PTZ00450, macrophage migration inhibitory factor-like protein; Provisional	NA|123aa|up_6|NZ_CP054657.1_1797389_1797758_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|167aa|up_5|NZ_CP054657.1_1798045_1798546_-	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)	NA|63aa|up_4|NZ_CP054657.1_1800001_1800190_+	NA	NA|119aa|up_3|NZ_CP054657.1_1800179_1800536_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|510aa|up_2|NZ_CP054657.1_1800602_1802132_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|471aa|up_1|NZ_CP054657.1_1808476_1809889_+	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)	NA|323aa|up_0|NZ_CP054657.1_1809926_1810895_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|47aa|down_0|NZ_CP054657.1_1813443_1813584_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|63aa|down_1|NZ_CP054657.1_1813573_1813762_-	NA	NA|320aa|down_2|NZ_CP054657.1_1825918_1826878_-	smart01038, Bgal_small_N, Beta galactosidase small chain	NA|323aa|down_3|NZ_CP054657.1_1827159_1828128_-	NA	NA|230aa|down_4|NZ_CP054657.1_1828120_1828810_-	NA	NA|176aa|down_5|NZ_CP054657.1_1828793_1829321_-	NA	NA|509aa|down_6|NZ_CP054657.1_1830151_1831678_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|334aa|down_7|NZ_CP054657.1_1831698_1832700_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|307aa|down_8|NZ_CP054657.1_1832807_1833728_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|703aa|down_9|NZ_CP054657.1_1833818_1835927_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH
GCF_013348825.1_ASM1334882v1	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	1	29923-30155	1	CRISPRCasFinder	no	cas14j	cas14j	Unclear	TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	35	0	0	NA	NA	NA	2	2	TypeV	csa3,cas14j,cas3,RT,DinG,DEDDh	NA|112aa|up_9|NZ_CP054658.1_25321_25657_-,NA|92aa|up_8|NZ_CP054658.1_25680_25956_-,NA|109aa|up_7|NZ_CP054658.1_25980_26307_-,NA|60aa|up_6|NZ_CP054658.1_26331_26511_-,NA|94aa|up_5|NZ_CP054658.1_26586_26868_-,NA|70aa|up_4|NZ_CP054658.1_27257_27467_-,NA|183aa|up_3|NZ_CP054658.1_27527_28076_-,NA|143aa|up_2|NZ_CP054658.1_28116_28545_-,NA|68aa|up_0|NZ_CP054658.1_29167_29371_-,NA|74aa|down_0|NZ_CP054658.1_30497_30719_-,NA|114aa|down_1|NZ_CP054658.1_33782_34124_-,NA|136aa|down_3|NZ_CP054658.1_36217_36625_-,NA|242aa|down_6|NZ_CP054658.1_39795_40521_+,NA|221aa|down_7|NZ_CP054658.1_40606_41269_+	NA|112aa|up_9|NZ_CP054658.1_25321_25657_-	NA	NA|92aa|up_8|NZ_CP054658.1_25680_25956_-	NA	NA|109aa|up_7|NZ_CP054658.1_25980_26307_-	NA	NA|60aa|up_6|NZ_CP054658.1_26331_26511_-	NA	NA|94aa|up_5|NZ_CP054658.1_26586_26868_-	NA	NA|70aa|up_4|NZ_CP054658.1_27257_27467_-	NA	NA|183aa|up_3|NZ_CP054658.1_27527_28076_-	NA	NA|143aa|up_2|NZ_CP054658.1_28116_28545_-	NA	NA|175aa|up_1|NZ_CP054658.1_28578_29103_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|68aa|up_0|NZ_CP054658.1_29167_29371_-	NA	NA|74aa|down_0|NZ_CP054658.1_30497_30719_-	NA	NA|114aa|down_1|NZ_CP054658.1_33782_34124_-	NA	NA|403aa|down_2|NZ_CP054658.1_34136_35345_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|136aa|down_3|NZ_CP054658.1_36217_36625_-	NA	NA|319aa|down_4|NZ_CP054658.1_36628_37585_-	pfam13614, AAA_31, AAA domain	NA|363aa|down_5|NZ_CP054658.1_38359_39448_+	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|242aa|down_6|NZ_CP054658.1_39795_40521_+	NA	NA|221aa|down_7|NZ_CP054658.1_40606_41269_+	NA	NA|89aa|down_8|NZ_CP054658.1_41374_41641_+	cd13832, IHF, Integration host factor (IHF) and similar proteins	NA|377aa|down_9|NZ_CP054658.1_41864_42995_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_013348825.1_ASM1334882v1	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	2	30246-30464	2	CRISPRCasFinder	no	cas14j	cas14j	Unclear	TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	35	0	0	NA	NA	NA	2	2	TypeV	csa3,cas14j,cas3,RT,DinG,DEDDh	NA|112aa|up_9|NZ_CP054658.1_25321_25657_-,NA|92aa|up_8|NZ_CP054658.1_25680_25956_-,NA|109aa|up_7|NZ_CP054658.1_25980_26307_-,NA|60aa|up_6|NZ_CP054658.1_26331_26511_-,NA|94aa|up_5|NZ_CP054658.1_26586_26868_-,NA|70aa|up_4|NZ_CP054658.1_27257_27467_-,NA|183aa|up_3|NZ_CP054658.1_27527_28076_-,NA|143aa|up_2|NZ_CP054658.1_28116_28545_-,NA|68aa|up_0|NZ_CP054658.1_29167_29371_-,NA|74aa|down_0|NZ_CP054658.1_30497_30719_-,NA|114aa|down_1|NZ_CP054658.1_33782_34124_-,NA|136aa|down_3|NZ_CP054658.1_36217_36625_-,NA|242aa|down_6|NZ_CP054658.1_39795_40521_+,NA|221aa|down_7|NZ_CP054658.1_40606_41269_+	NA|112aa|up_9|NZ_CP054658.1_25321_25657_-	NA	NA|92aa|up_8|NZ_CP054658.1_25680_25956_-	NA	NA|109aa|up_7|NZ_CP054658.1_25980_26307_-	NA	NA|60aa|up_6|NZ_CP054658.1_26331_26511_-	NA	NA|94aa|up_5|NZ_CP054658.1_26586_26868_-	NA	NA|70aa|up_4|NZ_CP054658.1_27257_27467_-	NA	NA|183aa|up_3|NZ_CP054658.1_27527_28076_-	NA	NA|143aa|up_2|NZ_CP054658.1_28116_28545_-	NA	NA|175aa|up_1|NZ_CP054658.1_28578_29103_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|68aa|up_0|NZ_CP054658.1_29167_29371_-	NA	NA|74aa|down_0|NZ_CP054658.1_30497_30719_-	NA	NA|114aa|down_1|NZ_CP054658.1_33782_34124_-	NA	NA|403aa|down_2|NZ_CP054658.1_34136_35345_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|136aa|down_3|NZ_CP054658.1_36217_36625_-	NA	NA|319aa|down_4|NZ_CP054658.1_36628_37585_-	pfam13614, AAA_31, AAA domain	NA|363aa|down_5|NZ_CP054658.1_38359_39448_+	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|242aa|down_6|NZ_CP054658.1_39795_40521_+	NA	NA|221aa|down_7|NZ_CP054658.1_40606_41269_+	NA	NA|89aa|down_8|NZ_CP054658.1_41374_41641_+	cd13832, IHF, Integration host factor (IHF) and similar proteins	NA|377aa|down_9|NZ_CP054658.1_41864_42995_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_013348825.1_ASM1334882v1	NZ_CP054661	Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence	1	8659-8840	1	CRISPRCasFinder	no			Orphan	ATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACA	36	0	0	NA	NA	NA	2	2	Orphan	csa3,cas14j,cas3,RT,DinG,DEDDh	NA|822aa|up_5|NZ_CP054661.1_63_2529_-,NA|137aa|up_4|NZ_CP054661.1_2541_2952_-,NA|121aa|up_2|NZ_CP054661.1_4406_4769_-,NA|85aa|up_1|NZ_CP054661.1_5158_5413_-,NA|902aa|up_0|NZ_CP054661.1_5600_8306_-,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|822aa|up_5|NZ_CP054661.1_63_2529_-	NA	NA|137aa|up_4|NZ_CP054661.1_2541_2952_-	NA	NA|456aa|up_3|NZ_CP054661.1_3052_4420_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|121aa|up_2|NZ_CP054661.1_4406_4769_-	NA	NA|85aa|up_1|NZ_CP054661.1_5158_5413_-	NA	NA|902aa|up_0|NZ_CP054661.1_5600_8306_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
