assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013348865.1_ASM1334886v1	NZ_CP054715	Salmonella enterica strain 85-0120 chromosome, complete genome	1	1817453-1817553	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG,cas14j,c2c9_V-U4	NA,NA	NA|448aa|up_9|NZ_CP054715.1_1803640_1804984_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP054715.1_1805614_1806067_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP054715.1_1806094_1807597_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|894aa|up_6|NZ_CP054715.1_1807621_1810303_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP054715.1_1810410_1810812_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP054715.1_1810811_1811756_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP054715.1_1811906_1812176_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP054715.1_1812415_1814551_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP054715.1_1814660_1815545_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP054715.1_1815650_1815731_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP054715.1_1817764_1819009_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP054715.1_1819099_1820107_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP054715.1_1820289_1821186_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP054715.1_1821176_1822172_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP054715.1_1822388_1822913_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP054715.1_1822906_1823410_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP054715.1_1823396_1823714_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP054715.1_1823751_1824195_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP054715.1_1824174_1824693_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP054715.1_1824823_1825459_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_013348865.1_ASM1334886v1	NZ_CP054715	Salmonella enterica strain 85-0120 chromosome, complete genome	2	2216278-2216550	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATA,GTGTTCCCCGCGNCAGCGGGGATAAACCG	29,24,29	0	0	NA	NA	I-E:I-E:I-E	3,4,4	4	Orphan	DEDDh,cas3,WYL,csa3,DinG,cas14j,c2c9_V-U4	NA,NA|162aa|down_6|NZ_CP054715.1_2224086_2224572_-	NA|110aa|up_9|NZ_CP054715.1_2202823_2203153_+	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|up_8|NZ_CP054715.1_2203152_2203935_+	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|150aa|up_7|NZ_CP054715.1_2203953_2204403_+	PRK08105, PRK08105, flavodoxin; Provisional	NA|919aa|up_6|NZ_CP054715.1_2204666_2207423_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|NZ_CP054715.1_2207480_2208776_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|NZ_CP054715.1_2208827_2211062_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|NZ_CP054715.1_2211136_2211928_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP054715.1_2212155_2213793_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP054715.1_2213875_2215174_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP054715.1_2215309_2215981_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP054715.1_2216647_2217445_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP054715.1_2217534_2217897_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP054715.1_2218332_2220132_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP054715.1_2220131_2221844_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP054715.1_2221928_2222663_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP054715.1_2222750_2223704_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|162aa|down_6|NZ_CP054715.1_2224086_2224572_-	NA	NA|349aa|down_7|NZ_CP054715.1_2224810_2225857_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|NZ_CP054715.1_2226108_2227017_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_9|NZ_CP054715.1_2227026_2228466_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCF_013348865.1_ASM1334886v1	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	1	76016-76101	1	CRISPRCasFinder	no	cas14j,c2c9_V-U4	DEDDh,cas14j,c2c9_V-U4	Unclear	GGTTAACCCTGCGGGCGGGGATAGGTCG	28	0	0	NA	NA	NA	1	1	TypeV	DEDDh,cas3,WYL,csa3,DinG,cas14j,c2c9_V-U4	NA|80aa|up_8|NZ_CP054718.1_70895_71135_+,NA|55aa|up_4|NZ_CP054718.1_74304_74469_+,NA|76aa|up_3|NZ_CP054718.1_74465_74693_+,NA|76aa|down_1|NZ_CP054718.1_78491_78719_-,NA|55aa|down_2|NZ_CP054718.1_78715_78880_-,NA|80aa|down_7|NZ_CP054718.1_82052_82292_-	NA|199aa|up_9|NZ_CP054718.1_70241_70838_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|80aa|up_8|NZ_CP054718.1_70895_71135_+	NA	NA|103aa|up_7|NZ_CP054718.1_71137_71446_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|394aa|up_6|NZ_CP054718.1_71576_72758_-	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|38aa|up_5|NZ_CP054718.1_74138_74252_+	pfam10554, Phage_ASH, Ash protein family	NA|55aa|up_4|NZ_CP054718.1_74304_74469_+	NA	NA|76aa|up_3|NZ_CP054718.1_74465_74693_+	NA	cas14j|191aa|up_2|NZ_CP054718.1_74659_75232_+	pfam12323, HTH_OrfB_IS605, Helix-turn-helix domain	c2c9_V-U4|73aa|up_1|NZ_CP054718.1_75407_75626_+	pfam01385, OrfB_IS605, Probable transposase	c2c9_V-U4|85aa|up_0|NZ_CP054718.1_75592_75847_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	c2c9_V-U4|405aa|down_0|NZ_CP054718.1_77310_78525_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|76aa|down_1|NZ_CP054718.1_78491_78719_-	NA	NA|55aa|down_2|NZ_CP054718.1_78715_78880_-	NA	NA|38aa|down_3|NZ_CP054718.1_78932_79046_-	pfam10554, Phage_ASH, Ash protein family	NA|390aa|down_4|NZ_CP054718.1_79263_80433_+	PHA02519, PHA02519, plasmid partition protein SopA; Reviewed	NA|394aa|down_5|NZ_CP054718.1_80429_81611_+	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|103aa|down_6|NZ_CP054718.1_81741_82050_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|80aa|down_7|NZ_CP054718.1_82052_82292_-	NA	NA|402aa|down_8|NZ_CP054718.1_82943_84149_+	COG5301, COG5301, Phage-related tail fibre protein [General function prediction only]	NA|152aa|down_9|NZ_CP054718.1_84229_84685_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK
GCF_013348865.1_ASM1334886v1	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	2	77026-77171	1	PILER-CR	no	cas14j,c2c9_V-U4	DEDDh,cas14j,c2c9_V-U4	Unclear	CGACCTATCCCCGCCCGCAGGGGTTAACCTCCGGC	35	1	1	77061-77086	NZ_CP054718.1_76127-76102	NA	2	2	TypeV	DEDDh,cas3,WYL,csa3,DinG,cas14j,c2c9_V-U4	NA|80aa|up_8|NZ_CP054718.1_70895_71135_+,NA|55aa|up_4|NZ_CP054718.1_74304_74469_+,NA|76aa|up_3|NZ_CP054718.1_74465_74693_+,NA|76aa|down_1|NZ_CP054718.1_78491_78719_-,NA|55aa|down_2|NZ_CP054718.1_78715_78880_-,NA|80aa|down_7|NZ_CP054718.1_82052_82292_-	NA|199aa|up_9|NZ_CP054718.1_70241_70838_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|80aa|up_8|NZ_CP054718.1_70895_71135_+	NA	NA|103aa|up_7|NZ_CP054718.1_71137_71446_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|394aa|up_6|NZ_CP054718.1_71576_72758_-	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|38aa|up_5|NZ_CP054718.1_74138_74252_+	pfam10554, Phage_ASH, Ash protein family	NA|55aa|up_4|NZ_CP054718.1_74304_74469_+	NA	NA|76aa|up_3|NZ_CP054718.1_74465_74693_+	NA	cas14j|191aa|up_2|NZ_CP054718.1_74659_75232_+	pfam12323, HTH_OrfB_IS605, Helix-turn-helix domain	c2c9_V-U4|73aa|up_1|NZ_CP054718.1_75407_75626_+	pfam01385, OrfB_IS605, Probable transposase	c2c9_V-U4|85aa|up_0|NZ_CP054718.1_75592_75847_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	c2c9_V-U4|405aa|down_0|NZ_CP054718.1_77310_78525_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|76aa|down_1|NZ_CP054718.1_78491_78719_-	NA	NA|55aa|down_2|NZ_CP054718.1_78715_78880_-	NA	NA|38aa|down_3|NZ_CP054718.1_78932_79046_-	pfam10554, Phage_ASH, Ash protein family	NA|390aa|down_4|NZ_CP054718.1_79263_80433_+	PHA02519, PHA02519, plasmid partition protein SopA; Reviewed	NA|394aa|down_5|NZ_CP054718.1_80429_81611_+	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|103aa|down_6|NZ_CP054718.1_81741_82050_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|80aa|down_7|NZ_CP054718.1_82052_82292_-	NA	NA|402aa|down_8|NZ_CP054718.1_82943_84149_+	COG5301, COG5301, Phage-related tail fibre protein [General function prediction only]	NA|152aa|down_9|NZ_CP054718.1_84229_84685_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK
