assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013357585.1_ASM1335758v1	NZ_CP053719	Proteus mirabilis strain MPE0346 chromosome, complete genome	1	221660-221802	1	CRISPRCasFinder	no		cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|74aa|up_8|NZ_CP053719.1_212330_212552_+,NA|143aa|up_7|NZ_CP053719.1_212619_213048_+,NA|49aa|up_1|NZ_CP053719.1_219597_219744_+,NA|68aa|up_0|NZ_CP053719.1_219744_219948_+,NA	NA|300aa|up_9|NZ_CP053719.1_211228_212128_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_8|NZ_CP053719.1_212330_212552_+	NA	NA|143aa|up_7|NZ_CP053719.1_212619_213048_+	NA	NA|245aa|up_6|NZ_CP053719.1_213215_213950_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP053719.1_214040_214664_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP053719.1_214832_215693_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP053719.1_215784_216156_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP053719.1_216326_218924_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP053719.1_219597_219744_+	NA	NA|68aa|up_0|NZ_CP053719.1_219744_219948_+	NA	NA|476aa|down_0|NZ_CP053719.1_234251_235679_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP053719.1_235880_237746_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP053719.1_237758_240425_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|262aa|down_3|NZ_CP053719.1_240588_241374_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP053719.1_241685_242228_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP053719.1_242438_242882_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP053719.1_242981_244085_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP053719.1_244081_245281_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP053719.1_245558_246173_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP053719.1_246175_246928_+	PRK05287, PRK05287, cell division protein ZapD
GCF_013357585.1_ASM1335758v1	NZ_CP053719	Proteus mirabilis strain MPE0346 chromosome, complete genome	2	1352423-1352562	1	PILER-CR	no	TnsE_C	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|126aa|up_8|NZ_CP053719.1_1346593_1346971_-,NA|124aa|up_7|NZ_CP053719.1_1347380_1347752_-,NA|166aa|up_6|NZ_CP053719.1_1347812_1348310_-,NA	TnsE_C|539aa|up_9|NZ_CP053719.1_1344746_1346363_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_8|NZ_CP053719.1_1346593_1346971_-	NA	NA|124aa|up_7|NZ_CP053719.1_1347380_1347752_-	NA	NA|166aa|up_6|NZ_CP053719.1_1347812_1348310_-	NA	NA|263aa|up_5|NZ_CP053719.1_1348385_1349174_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP053719.1_1349231_1349756_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP053719.1_1349850_1350324_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP053719.1_1350655_1351192_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP053719.1_1351306_1351633_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP053719.1_1351820_1352060_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|359aa|down_0|NZ_CP053719.1_1352988_1354065_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|564aa|down_1|NZ_CP053719.1_1354077_1355769_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|336aa|down_2|NZ_CP053719.1_1355817_1356825_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|376aa|down_3|NZ_CP053719.1_1356889_1358017_+	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|135aa|down_4|NZ_CP053719.1_1358091_1358496_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|96aa|down_5|NZ_CP053719.1_1358523_1358811_-	pfam10840, DUF2645, Protein of unknown function (DUF2645)	NA|271aa|down_6|NZ_CP053719.1_1358899_1359712_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|378aa|down_7|NZ_CP053719.1_1360586_1361720_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|469aa|down_8|NZ_CP053719.1_1361729_1363136_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|213aa|down_9|NZ_CP053719.1_1363228_1363867_-	PRK13756, PRK13756, TetR family transcriptional regulator
GCF_013357585.1_ASM1335758v1	NZ_CP053719	Proteus mirabilis strain MPE0346 chromosome, complete genome	3	4024980-4025135	2	CRISPRCasFinder	no		cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|546aa|up_6|NZ_CP053719.1_4015461_4017099_-,NA|115aa|down_2|NZ_CP053719.1_4027708_4028053_-,NA|271aa|down_4|NZ_CP053719.1_4028744_4029557_-,NA|107aa|down_5|NZ_CP053719.1_4029525_4029846_-,NA|163aa|down_6|NZ_CP053719.1_4029858_4030347_-,NA|153aa|down_8|NZ_CP053719.1_4032735_4033194_-,NA|151aa|down_9|NZ_CP053719.1_4033253_4033706_-	NA|187aa|up_9|NZ_CP053719.1_4013136_4013697_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_8|NZ_CP053719.1_4013759_4014617_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_7|NZ_CP053719.1_4014803_4015382_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|546aa|up_6|NZ_CP053719.1_4015461_4017099_-	NA	NA|419aa|up_5|NZ_CP053719.1_4017698_4018955_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP053719.1_4019307_4021746_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP053719.1_4021757_4022375_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP053719.1_4022378_4023155_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP053719.1_4023270_4023813_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP053719.1_4024381_4024561_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP053719.1_4025875_4026532_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP053719.1_4026528_4027716_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP053719.1_4027708_4028053_-	NA	NA|231aa|down_3|NZ_CP053719.1_4028049_4028742_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP053719.1_4028744_4029557_-	NA	NA|107aa|down_5|NZ_CP053719.1_4029525_4029846_-	NA	NA|163aa|down_6|NZ_CP053719.1_4029858_4030347_-	NA	NA|768aa|down_7|NZ_CP053719.1_4030349_4032653_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_8|NZ_CP053719.1_4032735_4033194_-	NA	NA|151aa|down_9|NZ_CP053719.1_4033253_4033706_-	NA
GCF_013357585.1_ASM1335758v1	NZ_CP053719	Proteus mirabilis strain MPE0346 chromosome, complete genome	4	4102708-4103103	3,2,1	CRISPRCasFinder,PILER-CR,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,GTTCATCCCCGTATACACGGGGAACAC,CCCGTATACACGGGGAACAC	29,27,20	1	1	4102737-4102768	NZ_CP053719.1_4170040-4170009	I-E:NA:NA	6,6,6	6	TypeI-E	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|221aa|up_9|NZ_CP053719.1_4091443_4092106_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_8|NZ_CP053719.1_4092140_4092635_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_7|NZ_CP053719.1_4092775_4093231_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_6|NZ_CP053719.1_4093622_4094825_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_5|NZ_CP053719.1_4094902_4097047_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_4|NZ_CP053719.1_4097383_4097527_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_3|NZ_CP053719.1_4097924_4098068_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_2|NZ_CP053719.1_4098464_4098608_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP053719.1_4098838_4101238_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP053719.1_4101315_4102539_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP053719.1_4103161_4103458_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP053719.1_4103460_4104381_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP053719.1_4104381_4105059_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP053719.1_4105058_4105796_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP053719.1_4105808_4106843_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP053719.1_4106909_4107497_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP053719.1_4107483_4109082_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|down_7|NZ_CP053719.1_4109078_4111772_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_8|NZ_CP053719.1_4112968_4114225_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_9|NZ_CP053719.1_4114235_4114523_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_013357585.1_ASM1335758v1	NZ_CP053719	Proteus mirabilis strain MPE0346 chromosome, complete genome	5	4112017-4112838	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	cas3,csa3,RT,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|800aa|up_9|NZ_CP053719.1_4098838_4101238_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_8|NZ_CP053719.1_4101315_4102539_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_7|NZ_CP053719.1_4103161_4103458_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_6|NZ_CP053719.1_4103460_4104381_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_5|NZ_CP053719.1_4104381_4105059_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_4|NZ_CP053719.1_4105058_4105796_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_3|NZ_CP053719.1_4105808_4106843_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP053719.1_4106909_4107497_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP053719.1_4107483_4109082_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|up_0|NZ_CP053719.1_4109078_4111772_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_0|NZ_CP053719.1_4112968_4114225_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP053719.1_4114235_4114523_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP053719.1_4114552_4114996_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP053719.1_4115222_4116269_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP053719.1_4116265_4116808_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP053719.1_4117004_4117619_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP053719.1_4117683_4118589_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP053719.1_4118608_4119190_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP053719.1_4119311_4120829_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP053719.1_4120859_4121351_-	PRK10845, PRK10845, colicin V production protein; Provisional
