assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013358365.1_ASM1335836v1	NZ_CP054831	Staphylococcus saprophyticus strain UTI-045 chromosome, complete genome	1	344567-344664	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TTGCATAAGAATCACTAAGGAAATT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA|69aa|down_5|NZ_CP054831.1_351082_351289_+	NA|107aa|up_9|NZ_CP054831.1_334937_335258_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|109aa|up_8|NZ_CP054831.1_335268_335595_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|265aa|up_7|NZ_CP054831.1_335828_336623_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|up_6|NZ_CP054831.1_336606_337326_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_5|NZ_CP054831.1_337322_338054_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|306aa|up_4|NZ_CP054831.1_339007_339925_-	PRK12921, PRK12921, oxidoreductase	NA|252aa|up_3|NZ_CP054831.1_340138_340894_+	pfam02517, Abi, CAAX protease self-immunity	NA|273aa|up_2|NZ_CP054831.1_341235_342054_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|311aa|up_1|NZ_CP054831.1_342097_343030_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|357aa|up_0|NZ_CP054831.1_343195_344266_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|430aa|down_0|NZ_CP054831.1_344671_345961_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|302aa|down_1|NZ_CP054831.1_346178_347084_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|382aa|down_2|NZ_CP054831.1_347080_348226_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|185aa|down_3|NZ_CP054831.1_349706_350261_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|157aa|down_4|NZ_CP054831.1_350434_350905_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|69aa|down_5|NZ_CP054831.1_351082_351289_+	NA	NA|281aa|down_6|NZ_CP054831.1_351375_352218_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_7|NZ_CP054831.1_352218_352833_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|down_8|NZ_CP054831.1_352846_353536_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|151aa|down_9|NZ_CP054831.1_353528_353981_-	PRK13261, ureE, urease accessory protein UreE; Provisional
GCF_013358365.1_ASM1335836v1	NZ_CP054831	Staphylococcus saprophyticus strain UTI-045 chromosome, complete genome	2	1809416-1813747	1	CRT	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGANTCNGATNCACTTACTGANGCTGAGTC	30	15	21	1809446-1809463|1809446-1809463|1809446-1809463|1809494-1809511|1809494-1809511|1809494-1809511|1809542-1809565|1809680-1809697|1809992-1810015|1810178-1810195|1810346-1810369|1810760-1810783|1810814-1810837|1810868-1810885|1810868-1810885|1810916-1810933|1811150-1811167|1811150-1811167|1811810-1811851|1813346-1813369|1813448-1813465	NZ_CP054831.1_1813802-1813819|NZ_CP054831.1_420612-420629|NZ_CP054831.1_431183-431200|NZ_CP054831.1_1813802-1813819|NZ_CP054831.1_420612-420629|NZ_CP054831.1_431183-431200|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_1813826-1813843|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_1813826-1813843|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_967774-967757|NZ_CP054831.1_1813802-1813819|NZ_CP054831.1_1813826-1813843|NZ_CP054831.1_967774-967757|NZ_CP054831.1_1813802-1813819|NZ_CP054831.1_1813802-1813843|NZ_CP054831.1_1813772-1813795|NZ_CP054831.1_1813826-1813843	NA	63	63	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|202aa|up_7|NZ_CP054831.1_1797148_1797754_-,NA	NA|542aa|up_9|NZ_CP054831.1_1793558_1795184_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|588aa|up_8|NZ_CP054831.1_1795170_1796934_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|202aa|up_7|NZ_CP054831.1_1797148_1797754_-	NA	NA|204aa|up_6|NZ_CP054831.1_1798109_1798721_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|447aa|up_5|NZ_CP054831.1_1798972_1800313_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|504aa|up_4|NZ_CP054831.1_1800305_1801817_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|797aa|up_3|NZ_CP054831.1_1801835_1804226_-	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|169aa|up_2|NZ_CP054831.1_1804247_1804754_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|515aa|up_1|NZ_CP054831.1_1804755_1806300_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|398aa|up_0|NZ_CP054831.1_1807854_1809048_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|243aa|down_0|NZ_CP054831.1_1816934_1817663_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|170aa|down_1|NZ_CP054831.1_1818157_1818667_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|195aa|down_2|NZ_CP054831.1_1818663_1819248_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|270aa|down_3|NZ_CP054831.1_1819250_1820060_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|274aa|down_4|NZ_CP054831.1_1820269_1821091_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|588aa|down_5|NZ_CP054831.1_1821093_1822857_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|204aa|down_6|NZ_CP054831.1_1822901_1823513_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|596aa|down_7|NZ_CP054831.1_1823840_1825628_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|105aa|down_8|NZ_CP054831.1_1825833_1826148_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|down_9|NZ_CP054831.1_1826229_1828578_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
