assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	1	402144-402245	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|70aa|up_8|NZ_LT009690.1_393703_393913_-,NA|128aa|up_6|NZ_LT009690.1_394737_395121_-,NA|33aa|up_0|NZ_LT009690.1_401368_401467_+,NA|221aa|down_1|NZ_LT009690.1_403335_403998_-,NA|179aa|down_7|NZ_LT009690.1_410089_410626_-	NA|84aa|up_9|NZ_LT009690.1_393413_393665_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_LT009690.1_393703_393913_-	NA	NA|194aa|up_7|NZ_LT009690.1_394090_394672_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_LT009690.1_394737_395121_-	NA	NA|209aa|up_5|NZ_LT009690.1_395390_396017_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_LT009690.1_396460_397984_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_LT009690.1_397999_398569_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_LT009690.1_399060_399816_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_LT009690.1_399895_401284_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_LT009690.1_401368_401467_+	NA	NA|319aa|down_0|NZ_LT009690.1_402261_403218_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_LT009690.1_403335_403998_-	NA	NA|136aa|down_2|NZ_LT009690.1_404140_404548_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_LT009690.1_405060_405639_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_LT009690.1_405638_406907_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_LT009690.1_406944_408411_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_LT009690.1_408435_409977_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_LT009690.1_410089_410626_-	NA	NA|235aa|down_8|NZ_LT009690.1_411017_411722_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_LT009690.1_412120_412393_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	2	764147-764229	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|69aa|up_9|NZ_LT009690.1_750760_750967_+,NA|34aa|down_1|NZ_LT009690.1_765884_765986_+,NA|52aa|down_8|NZ_LT009690.1_773832_773988_+	NA|69aa|up_9|NZ_LT009690.1_750760_750967_+	NA	NA|237aa|up_8|NZ_LT009690.1_751054_751765_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_LT009690.1_751748_752753_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_LT009690.1_753226_755167_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_LT009690.1_755436_757320_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_LT009690.1_757331_759113_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_LT009690.1_759334_760312_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_LT009690.1_760304_761819_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_LT009690.1_762058_763117_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_LT009690.1_763455_763998_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_LT009690.1_764876_765794_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_LT009690.1_765884_765986_+	NA	NA|502aa|down_2|NZ_LT009690.1_766063_767569_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_LT009690.1_767909_768410_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_LT009690.1_768429_769296_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_LT009690.1_770096_770495_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_LT009690.1_770457_772563_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_LT009690.1_772680_773652_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_LT009690.1_773832_773988_+	NA	NA|324aa|down_9|NZ_LT009690.1_774026_774998_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	3	805094-805172	3	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	805118-805148|805118-805148	NZ_LT009690.1_287103-287073|NZ_LT009690.1_287048-287018	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3,RT	NA|35aa|up_7|NZ_LT009690.1_795970_796075_+,NA|36aa|up_5|NZ_LT009690.1_797507_797615_+,NA	NA|191aa|up_9|NZ_LT009690.1_792411_792984_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_LT009690.1_793397_795929_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_LT009690.1_795970_796075_+	NA	NA|370aa|up_6|NZ_LT009690.1_796243_797354_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_LT009690.1_797507_797615_+	NA	NA|280aa|up_4|NZ_LT009690.1_797762_798602_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_LT009690.1_798775_799426_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_LT009690.1_799422_799659_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_LT009690.1_799927_801913_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_LT009690.1_801920_804767_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_LT009690.1_805430_806363_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_LT009690.1_806368_807208_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_LT009690.1_807215_807701_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_LT009690.1_807708_809148_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_LT009690.1_809214_810150_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_LT009690.1_811035_811947_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_LT009690.1_811943_812939_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_LT009690.1_813049_813994_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_LT009690.1_814557_815145_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_LT009690.1_815387_816290_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	4	810549-810818	1	CRT	no	cas3	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	48	810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810585-810606|810643-810665|810643-810665|810643-810665|810643-810665|810643-810665|810643-810665|810643-810665|810643-810665|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810702-810723|810760-810782|810760-810782|810760-810782|810760-810782|810760-810782|810760-810782|810760-810782|810760-810782	NZ_LT009690.1_163767-163746|NZ_LT009690.1_163825-163804|NZ_LT009690.1_163883-163862|NZ_LT009690.1_287019-286998|NZ_LT009690.1_287129-287108|NZ_LT009690.1_638701-638680|NZ_LT009690.1_763188-763209|NZ_LT009690.1_870178-870199|NZ_LT009690.1_1393622-1393601|NZ_LT009690.1_1482153-1482174|NZ_LT009690.1_1663719-1663740|NZ_LT009690.1_1678274-1678253|NZ_LT009690.1_1988805-1988826|NZ_LT009690.1_984529-984550|NZ_LT009690.1_1697980-1698001|NZ_LT009690.1_1698098-1698119|NZ_LT009690.1_163942-163920|NZ_LT009690.1_764160-764138|NZ_LT009690.1_764438-764416|NZ_LT009690.1_1393739-1393717|NZ_LT009690.1_1988863-1988885|NZ_LT009690.1_2339170-2339192|NZ_LT009690.1_1482036-1482058|NZ_LT009690.1_2100455-2100477|NZ_LT009690.1_163767-163746|NZ_LT009690.1_163825-163804|NZ_LT009690.1_163883-163862|NZ_LT009690.1_287019-286998|NZ_LT009690.1_287129-287108|NZ_LT009690.1_638701-638680|NZ_LT009690.1_763188-763209|NZ_LT009690.1_870178-870199|NZ_LT009690.1_1393622-1393601|NZ_LT009690.1_1482153-1482174|NZ_LT009690.1_1663719-1663740|NZ_LT009690.1_1678274-1678253|NZ_LT009690.1_1988805-1988826|NZ_LT009690.1_984529-984550|NZ_LT009690.1_1697980-1698001|NZ_LT009690.1_1698098-1698119|NZ_LT009690.1_163942-163920|NZ_LT009690.1_764160-764138|NZ_LT009690.1_764438-764416|NZ_LT009690.1_1393739-1393717|NZ_LT009690.1_1988863-1988885|NZ_LT009690.1_2339170-2339192|NZ_LT009690.1_1482036-1482058|NZ_LT009690.1_2100455-2100477	NA	4	4	Unclear	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA	NA|280aa|up_9|NZ_LT009690.1_797762_798602_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_LT009690.1_798775_799426_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_LT009690.1_799422_799659_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_LT009690.1_799927_801913_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_LT009690.1_801920_804767_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_LT009690.1_805430_806363_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_LT009690.1_806368_807208_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_LT009690.1_807215_807701_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_LT009690.1_807708_809148_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_LT009690.1_809214_810150_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_LT009690.1_811035_811947_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_LT009690.1_811943_812939_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_LT009690.1_813049_813994_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_LT009690.1_814557_815145_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_LT009690.1_815387_816290_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_LT009690.1_816992_817622_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_LT009690.1_818434_819448_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_LT009690.1_819500_820511_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_LT009690.1_820649_821840_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_LT009690.1_821961_822723_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	5	870105-870186	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	870129-870162	NZ_LT009690.1_1393730-1393697	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA	NA|194aa|up_9|NZ_LT009690.1_863207_863789_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_LT009690.1_863861_864479_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_LT009690.1_864633_865128_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_LT009690.1_865526_865949_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_LT009690.1_866096_866813_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_LT009690.1_866895_867435_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_LT009690.1_867585_867906_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_LT009690.1_868049_868406_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_LT009690.1_868563_868944_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_LT009690.1_869122_870001_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_LT009690.1_870741_871128_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_LT009690.1_871120_871417_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_LT009690.1_871666_872692_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_LT009690.1_872684_873380_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_LT009690.1_873397_874219_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_LT009690.1_874572_874767_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_LT009690.1_875000_875852_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_LT009690.1_876179_876941_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_LT009690.1_877038_878346_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_LT009690.1_878451_879702_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	6	1663643-1663727	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1663669-1663701|1663669-1663701	NZ_LT009690.1_163933-163901|NZ_LT009690.1_1393730-1393698	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA	NA|228aa|up_9|NZ_LT009690.1_1652852_1653536_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_LT009690.1_1653779_1653956_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_LT009690.1_1654248_1655595_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_LT009690.1_1655601_1656354_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_LT009690.1_1656355_1657294_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_LT009690.1_1657297_1658437_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_LT009690.1_1658572_1660405_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_LT009690.1_1660473_1661100_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_LT009690.1_1661131_1662109_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_LT009690.1_1662209_1663334_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_LT009690.1_1663899_1665723_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_LT009690.1_1666068_1666320_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_LT009690.1_1666364_1667339_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_LT009690.1_1667395_1669597_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_LT009690.1_1669601_1670063_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_LT009690.1_1670154_1670841_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_LT009690.1_1670880_1671597_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_LT009690.1_1671599_1671953_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_LT009690.1_1671953_1672538_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_LT009690.1_1672527_1673097_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	7	2100374-2100455	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2100398-2100431|2100398-2100431|2100398-2100431|2100398-2100431|2100398-2100431	NZ_LT009690.1_805093-805126|NZ_LT009690.1_1182046-1182013|NZ_LT009690.1_1783584-1783551|NZ_LT009690.1_1398071-1398104|NZ_LT009690.1_2790454-2790487	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|114aa|up_7|NZ_LT009690.1_2092118_2092460_+,NA|61aa|up_6|NZ_LT009690.1_2092663_2092846_+,NA|81aa|up_4|NZ_LT009690.1_2093939_2094182_+,NA	NA|238aa|up_9|NZ_LT009690.1_2090451_2091165_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_LT009690.1_2091180_2092113_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_LT009690.1_2092118_2092460_+	NA	NA|61aa|up_6|NZ_LT009690.1_2092663_2092846_+	NA	NA|328aa|up_5|NZ_LT009690.1_2092945_2093929_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_LT009690.1_2093939_2094182_+	NA	NA|346aa|up_3|NZ_LT009690.1_2094244_2095282_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_LT009690.1_2096400_2097417_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_LT009690.1_2097438_2098494_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_LT009690.1_2098929_2100153_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_LT009690.1_2100596_2101904_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_LT009690.1_2102443_2104060_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_LT009690.1_2104135_2104420_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_LT009690.1_2104594_2105338_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_LT009690.1_2105362_2106622_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_LT009690.1_2106818_2107445_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_LT009690.1_2107805_2108591_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_LT009690.1_2109190_2109325_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_LT009690.1_2109560_2110124_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_LT009690.1_2110126_2110270_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	8	2229631-2229711	7	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3,RT	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|77aa|up_5|NZ_LT009690.1_2224505_2224736_-,NA|364aa|up_0|NZ_LT009690.1_2228522_2229614_+,NA|35aa|down_0|NZ_LT009690.1_2230046_2230151_-,NA|53aa|down_1|NZ_LT009690.1_2230830_2230989_+	NA|237aa|up_9|NZ_LT009690.1_2220116_2220827_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LT009690.1_2220947_2221391_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LT009690.1_2221590_2222004_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LT009690.1_2222460_2223834_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LT009690.1_2224505_2224736_-	NA	NA|313aa|up_4|NZ_LT009690.1_2224766_2225705_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LT009690.1_2226140_2226806_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LT009690.1_2226957_2227278_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_LT009690.1_2227279_2228257_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LT009690.1_2228522_2229614_+	NA	NA|35aa|down_0|NZ_LT009690.1_2230046_2230151_-	NA	NA|53aa|down_1|NZ_LT009690.1_2230830_2230989_+	NA	NA|286aa|down_2|NZ_LT009690.1_2231646_2232504_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_LT009690.1_2232571_2233354_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_LT009690.1_2233585_2235391_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_LT009690.1_2236071_2237610_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_LT009690.1_2237644_2239777_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_LT009690.1_2239788_2240223_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_LT009690.1_2240222_2241329_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_LT009690.1_2241647_2249093_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	9	2241952-2242037	8	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3,RT	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|364aa|up_9|NZ_LT009690.1_2228522_2229614_+,NA|35aa|up_8|NZ_LT009690.1_2230046_2230151_-,NA|53aa|up_7|NZ_LT009690.1_2230830_2230989_+,NA	NA|364aa|up_9|NZ_LT009690.1_2228522_2229614_+	NA	NA|35aa|up_8|NZ_LT009690.1_2230046_2230151_-	NA	NA|53aa|up_7|NZ_LT009690.1_2230830_2230989_+	NA	NA|286aa|up_6|NZ_LT009690.1_2231646_2232504_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_LT009690.1_2232571_2233354_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_LT009690.1_2233585_2235391_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_LT009690.1_2236071_2237610_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_LT009690.1_2237644_2239777_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_LT009690.1_2239788_2240223_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_LT009690.1_2240222_2241329_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_LT009690.1_2249370_2250726_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_LT009690.1_2250752_2251685_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_LT009690.1_2251686_2252496_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_LT009690.1_2252684_2253593_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_LT009690.1_2259837_2260902_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_LT009690.1_2261049_2262492_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_LT009690.1_2262814_2263288_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_LT009690.1_2263386_2264730_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_LT009690.1_2264906_2265590_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_LT009690.1_2265608_2266796_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_900017775.1_NZAK3	NZ_LT009690	Staphylococcus aureus strain NZAK3 chromosome 1	10	2349975-2350055	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	13	2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030|2350000-2350030	NZ_LT009690.1_817837-817867|NZ_LT009690.1_817893-817923|NZ_LT009690.1_65098-65128|NZ_LT009690.1_363436-363406|NZ_LT009690.1_638765-638735|NZ_LT009690.1_870441-870471|NZ_LT009690.1_1187588-1187558|NZ_LT009690.1_1482089-1482119|NZ_LT009690.1_1482205-1482235|NZ_LT009690.1_1678337-1678307|NZ_LT009690.1_1987457-1987487|NZ_LT009690.1_2339223-2339253|NZ_LT009690.1_2514802-2514832	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|55aa|up_9|NZ_LT009690.1_2340532_2340697_+,NA|106aa|up_8|NZ_LT009690.1_2340941_2341259_+,NA|76aa|up_5|NZ_LT009690.1_2346380_2346608_+,NA|62aa|up_0|NZ_LT009690.1_2349747_2349933_+,NA	NA|55aa|up_9|NZ_LT009690.1_2340532_2340697_+	NA	NA|106aa|up_8|NZ_LT009690.1_2340941_2341259_+	NA	NA|1056aa|up_7|NZ_LT009690.1_2341442_2344610_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_LT009690.1_2344726_2345992_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|76aa|up_5|NZ_LT009690.1_2346380_2346608_+	NA	NA|255aa|up_4|NZ_LT009690.1_2346599_2347364_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_LT009690.1_2347525_2347966_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_LT009690.1_2347958_2349170_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_LT009690.1_2349271_2349622_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_LT009690.1_2349747_2349933_+	NA	NA|341aa|down_0|NZ_LT009690.1_2350198_2351221_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_LT009690.1_2351240_2351840_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_LT009690.1_2351846_2352080_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_LT009690.1_2352085_2352532_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_LT009690.1_2352545_2353031_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_LT009690.1_2353027_2354287_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_LT009690.1_2354349_2354844_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_LT009690.1_2354845_2355352_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_LT009690.1_2355382_2356387_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_LT009690.1_2356556_2357162_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
